RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 NKX6-3A6NJ46 265 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 TMPRSS2O15393 492 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 ECDO95905 644 aaPredicted RBP7.95□□□□□ -1.14
LIMA1-211ENST00000552338 IGHV2-5P01817 119 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 MT-ND4P03905 459 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 GNB3P16520 340 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 PRSS3P35030 304 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 RBMXP38159 391 aaKnown RBP7.95□□□□□ -1.14
LIMA1-211ENST00000552338 MEF2CQ06413 473 aaPredicted RBP7.95□□□□□ -1.14
LIMA1-211ENST00000552338 ZNF846Q147U1 533 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 CLEC12BQ2HXU8 276 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 PAN3Q58A45 887 aaKnown RBP7.95□□□□□ -1.14
LIMA1-211ENST00000552338 ATAD3CQ5T2N8 411 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 LYPD2Q6UXB3 125 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 BATF2Q8N1L9 274 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 ZNRF1Q8ND25 227 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 LY6G5BQ8NDX9 201 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 C19orf18Q8NEA5 215 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 DEFB108BQ8NET1 73 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 OR4M2Q8NGB6 313 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 DACT3Q96B18 629 aaPredicted RBP7.95□□□□□ -1.14
LIMA1-211ENST00000552338 PERPQ96FX8 193 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 COQ2Q96H96 371 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 CCL13Q99616 98 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 TOLLIPQ9H0E2 274 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 LPAR3Q9UBY5 353 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 MTFP1Q9UDX5 166 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 OR14J1Q9UGF5 321 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 AK3Q9UIJ7 227 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 MGAT4AQ9UM21 535 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 UTP20O75691 2785 aaKnown RBP7.95□□□□□ -1.14
LIMA1-211ENST00000552338 CR1P17927 2039 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 TRBV23-1A0A0A0MS06 115 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 PPIAL4CA0A0B4J2A2 164 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 SIRPB1O00241 398 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 DVL1O14640 695 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 ADAM20O43506 726 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 NDUFB3O43676 98 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 SSX5O60225 188 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 ZNF205O95201 554 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 LPLP06858 475 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 GZMHP20718 246 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 GABRA2P47869 451 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 CEBPDP49716 269 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-211ENST00000552338 LOXL1Q08397 574 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-211ENST00000552338 IL18Q14116 193 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 PDCD1Q15116 288 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 LRRC10Q5BKY1 277 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 WDR25Q64LD2 544 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-211ENST00000552338 OLFML2AQ68BL7 652 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 FAM131AQ6UXB0 335 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 Q6ZPA2 131 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 MOB1BQ7L9L4 216 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 HOGA1Q86XE5 327 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 BOLLQ8N9W6 283 aaKnown RBP7.94□□□□□ -1.14
LIMA1-211ENST00000552338 OR8B3Q8NGG8 313 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 PLPPR1Q8TBJ4 325 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 MRPL30Q8TCC3 161 aaKnown RBP7.94□□□□□ -1.14
LIMA1-211ENST00000552338 OR8B2Q96RD0 313 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 TSC22D3Q99576 134 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 CMSS1Q9BQ75 279 aaKnown RBP7.94□□□□□ -1.14
LIMA1-211ENST00000552338 Q9N2K0 584 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 ETAA1Q9NY74 926 aa7.94□□□□□ -1.14
LIMA1-211ENST00000552338 SLC25A10Q9UBX3 287 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-211ENST00000552338 IGHV4-30-2A0A087WSY4 118 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 A0A1B0GW55 424 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 MEIOCA2RUB1 952 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 TMEM235A6NFC5 223 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 NPIPB11E5RHQ5 1161 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 ORC5O43913 435 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 FCGR3AP08637 254 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 CD3GP09693 182 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 DUX4L2P0CJ85 424 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 DUX4L3P0CJ86 424 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 DUX4L4P0CJ87 422 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 DUX4L5P0CJ88 424 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 DUX4L6P0CJ89 424 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 DUX4L7P0CJ90 424 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 P2RX3P56373 397 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 GMFBP60983 142 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 PAX2Q02962 417 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 SCN1BQ07699 218 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 GRK1Q15835 563 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 TRAT1Q6PIZ9 186 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 DUX4L9Q6RFH8 374 aaPredicted RBP7.93□□□□□ -1.14
LIMA1-211ENST00000552338 C1orf122Q6ZSJ8 110 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 NLRC3Q7RTR2 1065 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 RTN4RL2Q86UN3 420 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 BPIFB2Q8N4F0 458 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 FAM216BQ8N7L0 139 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 OR10A7Q8NGE5 316 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 CLDND2Q8NHS1 167 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 FCAMRQ8WWV6 532 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 TRIM63Q969Q1 353 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 RAB39BQ96DA2 213 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 DCTN5Q9BTE1 182 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 PPA2Q9H2U2 334 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 ZMAT3Q9HA38 289 aaKnown RBP7.93□□□□□ -1.14
LIMA1-211ENST00000552338 PALMDQ9NP74 551 aa7.93□□□□□ -1.14
LIMA1-211ENST00000552338 C12orf4Q9NQ89 552 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms