RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 DCXRQ7Z4W1 244 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 CALHM1Q8IU99 346 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 OFCC1Q8IZS5 231 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 STPG2Q8N412 459 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 ZNF676Q8N7Q3 588 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 OR4K13Q8NH42 304 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 PIGCQ92535 297 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 SLAMF9Q96A28 289 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 BSCL2Q96G97 398 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-204ENST00000549064 GPX7Q96SL4 187 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-204ENST00000549064 CGREF1Q99674 301 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 CLEC7AQ9BXN2 247 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 KRTAP4-5Q9BYR2 181 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 CENPMQ9NSP4 180 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 HHLA2Q9UM44 414 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 MOB4Q9Y3A3 225 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 HSPE1-MOB4S4R3N1 261 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 FAM172BPA6NC97 362 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 SLC1A7O00341 560 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 CCRL2O00421 344 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 FFAR1O14842 300 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 DEDDO75618 318 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 MMP23AO75900 390 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 TXNDC12O95881 172 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 RLN1P04808 185 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 ARSBP15848 533 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 HIST1H1CP16403 213 aaKnown RBP5.01□□□□□ -1.61
LIMA1-204ENST00000549064 MPZP25189 248 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 CALRP27797 417 aaKnown RBP5.01□□□□□ -1.61
LIMA1-204ENST00000549064 HTR1DP28221 377 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 BRS3P32247 399 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 CX3CR1P49238 355 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 POU3F4P49335 361 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 MRPL19P49406 292 aaKnown RBP5.01□□□□□ -1.61
LIMA1-204ENST00000549064 INSL3P51460 131 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 EDDM3BP56851 147 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 ZP1P60852 638 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 SLC35B1P78383 322 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 CBX3Q13185 183 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 IL18R1Q13478 541 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 EIF2B1Q14232 305 aaKnown RBP5.01□□□□□ -1.61
LIMA1-204ENST00000549064 TRAM2Q15035 370 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 TAF13Q15543 124 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 HAGHQ16775 308 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 LRRC23Q53EV4 343 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-204ENST00000549064 WDR73Q6P4I2 378 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 TIGD4Q8IY51 512 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 ZNF561Q8N587 486 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 COMMD1Q8N668 190 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 OR11H1Q8NG94 326 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 ZNRF4Q8WWF5 429 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 LZICQ8WZA0 190 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 SLAMF6Q96DU3 332 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 TPD52L3Q96J77 140 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 ERMAPQ96PL5 475 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-204ENST00000549064 OR8B4Q96RC9 309 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 NDEL1Q9GZM8 345 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 KRCC1Q9NPI7 259 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-204ENST00000549064 DNAJC27Q9NZQ0 273 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 RCC2Q9P258 522 aaKnown RBP5.01□□□□□ -1.61
LIMA1-204ENST00000549064 MPC1Q9Y5U8 109 aa5.01□□□□□ -1.61
LIMA1-204ENST00000549064 ABCA13Q86UQ4 5058 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 ZNF732B4DXR9 585 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 M0QZK8 103 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 SLC33A1O00400 549 aaPredicted RBP5□□□□□ -1.61
LIMA1-204ENST00000549064 SELENOFO60613 162 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 SAP30O75446 220 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 RENP00797 406 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 RBP4P02753 201 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 IFNA6P05013 189 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 OR2T7P0C7T2 308 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 CNTFRP26992 372 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 CDX1P47902 265 aaPredicted RBP5□□□□□ -1.61
LIMA1-204ENST00000549064 RASSF2P50749 326 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 PLA2G7Q13093 441 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 CYBRD1Q53TN4 286 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 FAM53AQ6NSI3 398 aaPredicted RBP5□□□□□ -1.61
LIMA1-204ENST00000549064 NANOGP8Q6NSW7 305 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 HAGHLQ6PII5 290 aaPredicted RBP5□□□□□ -1.61
LIMA1-204ENST00000549064 DPY19L2P2Q6ZN68 376 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 KCTD9Q7L273 389 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 SLC35E3Q7Z769 313 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 VTCN1Q7Z7D3 282 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 ZNF429Q86V71 674 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 RNF113BQ8IZP6 322 aaKnown RBP5□□□□□ -1.61
LIMA1-204ENST00000549064 Q8N1X5 172 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 DRAM1Q8N682 238 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 TPRX1Q8N7U7 411 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 C5orf56Q8N8D9 126 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 ASCC1Q8N9N2 400 aaKnown RBP5□□□□□ -1.61
LIMA1-204ENST00000549064 OR51L1Q8NGJ5 315 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 AQP3Q92482 292 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 DCUN1D4Q92564 292 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 ZNF714Q96N38 554 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 FEVQ99581 238 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 EBF4Q9BQW3 602 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 TMEM133Q9H2Q1 129 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 OR51I2Q9H344 312 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 SLA2Q9H6Q3 261 aa5□□□□□ -1.61
LIMA1-204ENST00000549064 DPM3Q9P2X0 92 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms