RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 SPAM1P38567 509 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 DYNLL1P63167 89 aaKnown RBP2.1□□□□□ -2.07
VPS29-205ENST00000548539 ZNF235Q14590 738 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 ZBTB6Q15916 424 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 GOLGA7BQ2TAP0 167 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 DEFB134Q4QY38 66 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 LAMTOR1Q6IAA8 161 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 FAM183BPQ6ZVS7 135 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 MRPL52Q86TS9 123 aaKnown RBP2.1□□□□□ -2.07
VPS29-205ENST00000548539 FAM45AQ8TCE6 357 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 PDCD6IPQ8WUM4 868 aaKnown RBP2.1□□□□□ -2.07
VPS29-205ENST00000548539 ATP6V1G3Q96LB4 118 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 FAAP24Q9BTP7 215 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 TSSK6Q9BXA6 273 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 METTL17Q9H7H0 456 aaPredicted RBP2.1□□□□□ -2.07
VPS29-205ENST00000548539 NRBP2Q9NSY0 501 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 TAS2R1Q9NYW7 299 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 POMPQ9Y244 141 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 TRAPPC1Q9Y5R8 145 aa2.1□□□□□ -2.07
VPS29-205ENST00000548539 GPR179Q6PRD1 2367 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 TRIP11Q15643 1979 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 IGHV2-26A0A0B4J1V2 119 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 TRAV8-2A0A0B4J237 113 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 IGKV2-24A0A0C4DH68 120 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 A6NED7 52 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 TRPC5OSA6NMA1 111 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 A8MWP4 228 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 LEUTXA8MZ59 168 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 SMLR1H3BR10 107 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 POLR3GO15318 223 aaPredicted RBP2.09□□□□□ -2.07
VPS29-205ENST00000548539 PSIP1O75475 530 aaKnown RBP2.09□□□□□ -2.07
VPS29-205ENST00000548539 CGB3P0DN86 165 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 CGB7P0DN87 165 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 GABRA1P14867 456 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 ELK4P28324 431 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 CD34P28906 385 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 PYCR1P32322 319 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 CBX5P45973 191 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 LGALSLQ3ZCW2 172 aaPredicted RBP2.09□□□□□ -2.07
VPS29-205ENST00000548539 TMEM215Q68D42 235 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 OLIG3Q7RTU3 272 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 C17orf78Q8N4C9 275 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 ZIC4Q8N9L1 334 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 RNASEH2CQ8TDP1 164 aaKnown RBP2.09□□□□□ -2.07
VPS29-205ENST00000548539 CASTOR1Q8WTX7 329 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 ZBED3Q96IU2 234 aaPredicted RBP2.09□□□□□ -2.07
VPS29-205ENST00000548539 MED10Q9BTT4 135 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 DUSP21Q9H596 190 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 METTL8Q9H825 291 aaKnown RBP2.09□□□□□ -2.07
VPS29-205ENST00000548539 ASF1BQ9NVP2 202 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 TBL2Q9Y4P3 447 aaKnown RBP2.09□□□□□ -2.07
VPS29-205ENST00000548539 URGCP-MRPS24S4R325 110 aa2.09□□□□□ -2.07
VPS29-205ENST00000548539 NOS1P29475 1434 aa2.08□□□□□ -2.08
VPS29-205ENST00000548539 IGHV1-45A0A0A0MS14 117 aa2.08□□□□□ -2.08
VPS29-205ENST00000548539 FAM183AA6NL82 134 aa2.08□□□□□ -2.08
VPS29-205ENST00000548539 IQCF5A8MTL0 148 aa2.08□□□□□ -2.08
VPS29-205ENST00000548539 C4orf51C9J302 202 aa2.08□□□□□ -2.08
VPS29-205ENST00000548539 CRXO43186 299 aaPredicted RBP2.08□□□□□ -2.08
VPS29-205ENST00000548539 TCF21O43680 179 aa2.08□□□□□ -2.08
VPS29-205ENST00000548539 RHOAP61586 193 aa2.08□□□□□ -2.08
VPS29-205ENST00000548539 PMS2P3Q13401 168 aa2.08□□□□□ -2.08
VPS29-205ENST00000548539 SYCP1Q15431 976 aa2.08□□□□□ -2.08
VPS29-205ENST00000548539 ZNF141Q15928 474 aa2.08□□□□□ -2.08
VPS29-205ENST00000548539 KRTAP25-1Q3LHN0 102 aa2.08□□□□□ -2.08
VPS29-205ENST00000548539 PYDC2Q56P42 97 aa2.08□□□□□ -2.08
VPS29-205ENST00000548539 ZFAND6Q6FIF0 208 aa2.08□□□□□ -2.08
VPS29-205ENST00000548539 CLEC20AQ6ZU45 233 aa2.08□□□□□ -2.08
VPS29-205ENST00000548539 FAM19A3Q7Z5A8 133 aa2.08□□□□□ -2.08
VPS29-205ENST00000548539 BOD1L2Q8IYS8 172 aa2.08□□□□□ -2.08
VPS29-205ENST00000548539 DDIT4LQ96D03 193 aa2.08□□□□□ -2.08
VPS29-205ENST00000548539 ZNF230Q9UIE0 474 aaPredicted RBP2.08□□□□□ -2.08
VPS29-205ENST00000548539 ZNF391Q9UJN7 358 aa2.08□□□□□ -2.08
VPS29-205ENST00000548539 FBXL3Q9UKT7 428 aa2.08□□□□□ -2.08
VPS29-205ENST00000548539 C8orf87E5RJ46 101 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 C15orf65H3BRN8 121 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 IGLV6-57P01721 117 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 IGKV4-1P06312 121 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 LIMS3P0CW19 117 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 LIMS4P0CW20 117 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 CNTFRP26992 372 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 CRABP2P29373 138 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 PSMD7P51665 324 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 IHHQ14623 411 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 SPIN3Q5JUX0 258 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 AMMECR1LQ6DCA0 310 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 BRD3OSQ6XYD6 125 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 ZNF738Q8NE65 137 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 OR4A5Q8NH83 315 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 RORBQ92753 470 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 REEP6Q96HR9 211 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 IGF2BP2-AS1Q96M15 143 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 NDEL1Q9GZM8 345 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 OR51E2Q9H255 320 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 OR52A5Q9H2C5 316 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 RHOFQ9HBH0 211 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 SPACA1Q9HBV2 294 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 FADS3Q9Y5Q0 445 aa2.07□□□□□ -2.08
VPS29-205ENST00000548539 IGKV3D-11A0A0A0MRZ8 115 aa2.06□□□□□ -2.08
VPS29-205ENST00000548539 EFCAB9A8MZ26 197 aa2.06□□□□□ -2.08
VPS29-205ENST00000548539 H3BMM0 161 aa2.06□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms