RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 ADGRL4Q9HBW9 690 aa13.26□□□□□ -0.29
VPS29-204ENST00000548259 CALYQ9NYX4 217 aa13.26□□□□□ -0.29
VPS29-204ENST00000548259 IDI2-AS1Q9NZ38 188 aa13.26□□□□□ -0.29
VPS29-204ENST00000548259 LOC107986453A0A1B0GWG9 222 aa13.25□□□□□ -0.29
VPS29-204ENST00000548259 METTL15A6NJ78 407 aa13.25□□□□□ -0.29
VPS29-204ENST00000548259 SULT1C4O75897 302 aa13.25□□□□□ -0.29
VPS29-204ENST00000548259 DCTN3O75935 186 aa13.25□□□□□ -0.29
VPS29-204ENST00000548259 GAPDHP04406 335 aaKnown RBP13.25□□□□□ -0.29
VPS29-204ENST00000548259 ATF1P18846 271 aa13.25□□□□□ -0.29
VPS29-204ENST00000548259 ATXN7L3Q14CW9 347 aaPredicted RBP13.25□□□□□ -0.29
VPS29-204ENST00000548259 NXNL2Q5VZ03 156 aa13.25□□□□□ -0.29
VPS29-204ENST00000548259 TMEM179BQ7Z7N9 219 aa13.25□□□□□ -0.29
VPS29-204ENST00000548259 MOB3BQ86TA1 216 aa13.25□□□□□ -0.29
VPS29-204ENST00000548259 OR11H1Q8NG94 326 aa13.25□□□□□ -0.29
VPS29-204ENST00000548259 OR2T10Q8NGZ9 312 aa13.25□□□□□ -0.29
VPS29-204ENST00000548259 ISOC1Q96CN7 298 aa13.25□□□□□ -0.29
VPS29-204ENST00000548259 RNFT2Q96EX2 444 aa13.25□□□□□ -0.29
VPS29-204ENST00000548259 BARHL1Q9BZE3 327 aa13.25□□□□□ -0.29
VPS29-204ENST00000548259 PSG11Q9UQ72 335 aa13.25□□□□□ -0.29
VPS29-204ENST00000548259 RYR2Q92736 4967 aa13.25□□□□□ -0.29
VPS29-204ENST00000548259 MEIKINA0A087WXM9 373 aa13.24□□□□□ -0.29
VPS29-204ENST00000548259 HSD17B6O14756 317 aa13.24□□□□□ -0.29
VPS29-204ENST00000548259 PRKYO43930 277 aa13.24□□□□□ -0.29
VPS29-204ENST00000548259 KDM4BO94953 1096 aa13.24□□□□□ -0.29
VPS29-204ENST00000548259 IL1AP01583 271 aa13.24□□□□□ -0.29
VPS29-204ENST00000548259 PRKACGP22612 351 aa13.24□□□□□ -0.29
VPS29-204ENST00000548259 FHL3Q13643 280 aa13.24□□□□□ -0.29
VPS29-204ENST00000548259 EBI3Q14213 229 aa13.24□□□□□ -0.29
VPS29-204ENST00000548259 TMEM244Q5VVB8 128 aa13.24□□□□□ -0.29
VPS29-204ENST00000548259 TMEM65Q6PI78 240 aa13.24□□□□□ -0.29
VPS29-204ENST00000548259 FAM220AQ7Z4H9 259 aa13.24□□□□□ -0.29
VPS29-204ENST00000548259 SAXO1Q8IYX7 474 aa13.24□□□□□ -0.29
VPS29-204ENST00000548259 OR10A7Q8NGE5 316 aa13.24□□□□□ -0.29
VPS29-204ENST00000548259 OR8H1Q8NGG4 311 aa13.24□□□□□ -0.29
VPS29-204ENST00000548259 ASB9Q96DX5 294 aa13.24□□□□□ -0.29
VPS29-204ENST00000548259 COQ2Q96H96 371 aa13.24□□□□□ -0.29
VPS29-204ENST00000548259 OPALINQ96PE5 141 aa13.24□□□□□ -0.29
VPS29-204ENST00000548259 NCOR1P1Q9H4R4 102 aa13.24□□□□□ -0.29
VPS29-204ENST00000548259 MED4Q9NPJ6 270 aa13.24□□□□□ -0.29
VPS29-204ENST00000548259 B2RBV5 119 aa13.23□□□□□ -0.29
VPS29-204ENST00000548259 SLC33A1O00400 549 aaPredicted RBP13.23□□□□□ -0.29
VPS29-204ENST00000548259 IGHV3-7P01780 117 aa13.23□□□□□ -0.29
VPS29-204ENST00000548259 IGHG4P01861 327 aa13.23□□□□□ -0.29
VPS29-204ENST00000548259 OR2T7P0C7T2 308 aa13.23□□□□□ -0.29
VPS29-204ENST00000548259 GNG10P50151 68 aa13.23□□□□□ -0.29
VPS29-204ENST00000548259 ZNF816Q0VGE8 651 aaPredicted RBP13.23□□□□□ -0.29
VPS29-204ENST00000548259 PTGES3Q15185 160 aaKnown RBP13.23□□□□□ -0.29
VPS29-204ENST00000548259 ZFAND6Q6FIF0 208 aa13.23□□□□□ -0.29
VPS29-204ENST00000548259 OVCH2Q7RTZ1 564 aa13.23□□□□□ -0.29
VPS29-204ENST00000548259 LEAP2Q969E1 77 aa13.23□□□□□ -0.29
VPS29-204ENST00000548259 EAF1Q96JC9 268 aaPredicted RBP13.23□□□□□ -0.29
VPS29-204ENST00000548259 TBX5Q99593 518 aa13.23□□□□□ -0.29
VPS29-204ENST00000548259 NKX1-2Q9UD57 310 aaPredicted RBP13.23□□□□□ -0.29
VPS29-204ENST00000548259 BIRC6Q9NR09 4857 aa13.23□□□□□ -0.29
VPS29-204ENST00000548259 LINC01548A6NM66 108 aa13.22□□□□□ -0.29
VPS29-204ENST00000548259 FRMD6-AS1P0C7T7 363 aa13.22□□□□□ -0.29
VPS29-204ENST00000548259 DBTP11182 482 aaKnown RBP13.22□□□□□ -0.29
VPS29-204ENST00000548259 IL3RAP26951 378 aa13.22□□□□□ -0.29
VPS29-204ENST00000548259 ATP6V1E1P36543 226 aa13.22□□□□□ -0.29
VPS29-204ENST00000548259 MS4A2Q01362 244 aa13.22□□□□□ -0.29
VPS29-204ENST00000548259 ZNF616Q08AN1 781 aa13.22□□□□□ -0.29
VPS29-204ENST00000548259 LTC4SQ16873 150 aa13.22□□□□□ -0.29
VPS29-204ENST00000548259 AADACL4Q5VUY2 407 aa13.22□□□□□ -0.29
VPS29-204ENST00000548259 IZUMO1Q8IYV9 350 aa13.22□□□□□ -0.29
VPS29-204ENST00000548259 ADGRG5Q8IZF4 528 aa13.22□□□□□ -0.29
VPS29-204ENST00000548259 HS3ST5Q8IZT8 346 aa13.22□□□□□ -0.29
VPS29-204ENST00000548259 TCEANCQ8N8B7 351 aa13.22□□□□□ -0.29
VPS29-204ENST00000548259 OR51T1Q8NGJ9 327 aa13.22□□□□□ -0.29
VPS29-204ENST00000548259 OR1N2Q8NGR9 330 aa13.22□□□□□ -0.29
VPS29-204ENST00000548259 TMEM163Q8TC26 289 aa13.22□□□□□ -0.29
VPS29-204ENST00000548259 RFT1Q96AA3 541 aa13.22□□□□□ -0.29
VPS29-204ENST00000548259 FGGYQ96C11 551 aa13.22□□□□□ -0.29
VPS29-204ENST00000548259 ADAT3Q96EY9 351 aaPredicted RBP13.22□□□□□ -0.29
VPS29-204ENST00000548259 CHCHD6Q9BRQ6 235 aa13.22□□□□□ -0.29
VPS29-204ENST00000548259 OSBPL10Q9BXB5 764 aa13.22□□□□□ -0.29
VPS29-204ENST00000548259 PPIL3Q9H2H8 161 aaKnown RBP13.22□□□□□ -0.29
VPS29-204ENST00000548259 GHITMQ9H3K2 345 aa13.22□□□□□ -0.29
VPS29-204ENST00000548259 LINC00574Q9H8X3 128 aa13.22□□□□□ -0.29
VPS29-204ENST00000548259 GAR1Q9NY12 217 aaKnown RBP13.22□□□□□ -0.29
VPS29-204ENST00000548259 WARS2Q9UGM6 360 aaKnown RBP13.22□□□□□ -0.29
VPS29-204ENST00000548259 ARL2BPQ9Y2Y0 163 aa13.22□□□□□ -0.29
VPS29-204ENST00000548259 IGHV1-3A0A0C4DH29 117 aa13.21□□□□□ -0.29
VPS29-204ENST00000548259 IGKV1-9A0A0C4DH69 117 aa13.21□□□□□ -0.29
VPS29-204ENST00000548259 CGB3P0DN86 165 aa13.21□□□□□ -0.29
VPS29-204ENST00000548259 CGB7P0DN87 165 aa13.21□□□□□ -0.29
VPS29-204ENST00000548259 SOX6P35712 828 aa13.21□□□□□ -0.29
VPS29-204ENST00000548259 DIAPH2-AS1Q14236 149 aa13.21□□□□□ -0.29
VPS29-204ENST00000548259 PAN3Q58A45 887 aaKnown RBP13.21□□□□□ -0.29
VPS29-204ENST00000548259 Q6P435 159 aa13.21□□□□□ -0.29
VPS29-204ENST00000548259 BCDIN3DQ7Z5W3 292 aaKnown RBP13.21□□□□□ -0.29
VPS29-204ENST00000548259 Q8N9W7 124 aa13.21□□□□□ -0.29
VPS29-204ENST00000548259 OR10H4Q8NGA5 316 aa13.21□□□□□ -0.29
VPS29-204ENST00000548259 CCDC124Q96CT7 223 aaKnown RBP13.21□□□□□ -0.29
VPS29-204ENST00000548259 UBE2E2Q96LR5 201 aa13.21□□□□□ -0.29
VPS29-204ENST00000548259 ISYNA1Q9NPH2 558 aa13.21□□□□□ -0.29
VPS29-204ENST00000548259 FAM118AQ9NWS6 357 aa13.21□□□□□ -0.29
VPS29-204ENST00000548259 KIF25Q9UIL4 384 aa13.21□□□□□ -0.29
VPS29-204ENST00000548259 IGKV1-12A0A0C4DH73 117 aa13.2□□□□□ -0.3
VPS29-204ENST00000548259 A0A1W2PQL4 384 aaPredicted RBP13.2□□□□□ -0.3
VPS29-204ENST00000548259 AQP12BA6NM10 295 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms