RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 SIGLEC12Q96PQ1 595 aa7.55□□□□□ -1.2
TDP1-204ENST00000545686 TMEM242Q9NWH2 141 aa7.55□□□□□ -1.2
TDP1-204ENST00000545686 LAMA1P25391 3075 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 LOC102723971A0A1B0GUV8 181 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 H0YL77 283 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 ADAM20O43506 726 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 ZIC3O60481 467 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 CXCL1P09341 107 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 ASCL1P50553 236 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 NDUFA6P56556 154 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 CLDN15P56746 228 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 TAS2R30P59541 319 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 PCBD1P61457 104 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 COL19A1Q14993 1142 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 HAGHQ16775 308 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 TRIM61Q5EBN2 209 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 PLCXD3Q63HM9 321 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 OR5D13Q8NGL4 314 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 CPNE4Q96A23 557 aaPredicted RBP7.54□□□□□ -1.2
TDP1-204ENST00000545686 ABHD14AQ9BUJ0 271 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 RYDENQ9NUL5 291 aaKnown RBP7.54□□□□□ -1.2
TDP1-204ENST00000545686 NCKAP5O14513 1909 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 CACNA1EQ15878 2313 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 A0A0J9YW62 118 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 H0Y980 276 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 BCAT2O15382 392 aaPredicted RBP7.54□□□□□ -1.2
TDP1-204ENST00000545686 HIST1H2BKO60814 126 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 TUSC2O75896 110 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 HIST1H2BJP06899 126 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 CTXN2P0C2S0 81 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 SLC25A6P12236 298 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 ZNF32P17041 273 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 HIST1H2BOP23527 126 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 HIST1H2BBP33778 126 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 HIST1H2BDP58876 126 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 ERVFRD-1P60508 538 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 RAC3P60763 192 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 HIST1H2BCP62807 126 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 HLA-DRB3P79483 266 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 DAZAP2Q15038 168 aaPredicted RBP7.54□□□□□ -1.2
TDP1-204ENST00000545686 RNPS1Q15287 305 aaKnown RBP7.54□□□□□ -1.2
TDP1-204ENST00000545686 HIST2H2BEQ16778 126 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 ACSF3Q4G176 576 aaPredicted RBP7.54□□□□□ -1.2
TDP1-204ENST00000545686 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.54□□□□□ -1.2
TDP1-204ENST00000545686 BRICD5Q6PL45 260 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 ZNF600Q6ZNG1 722 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 ODF3L1Q8IXM7 274 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 SAXO1Q8IYX7 474 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 CMTM1Q8IZ96 169 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 SUMF1Q8NBK3 374 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 EXTL1Q92935 676 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 HIST1H2BHQ93079 126 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 SPSB4Q96A44 273 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 ZNF837Q96EG3 531 aaPredicted RBP7.54□□□□□ -1.2
TDP1-204ENST00000545686 PFDN5Q99471 154 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 HIST1H2BNQ99877 126 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 HIST1H2BMQ99879 126 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 Q9N2K0 584 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 SH2D2AQ9NP31 389 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 SLC7A10Q9NS82 523 aa7.54□□□□□ -1.2
TDP1-204ENST00000545686 TRBV23-1A0A0A0MS06 115 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 KIR2DS1A0A191URI9 304 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 ZNF727A8MUV8 499 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 TNFSF11O14788 317 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 PPP1R2P9O14990 202 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 OR7C1O76099 320 aaPredicted RBP7.53□□□□□ -1.2
TDP1-204ENST00000545686 NAPSAO96009 420 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 OMGP23515 440 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 KIR2DS4P43632 304 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 RND2P52198 227 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 RPL23AP62750 156 aaKnown RBP7.53□□□□□ -1.2
TDP1-204ENST00000545686 NKX6-1P78426 367 aaPredicted RBP7.53□□□□□ -1.2
TDP1-204ENST00000545686 KIR2DS1Q14954 304 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 RSPO4Q2I0M5 234 aaPredicted RBP7.53□□□□□ -1.2
TDP1-204ENST00000545686 CXorf66Q5JRM2 361 aaPredicted RBP7.53□□□□□ -1.2
TDP1-204ENST00000545686 RIPPLY2Q5TAB7 128 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 STX12Q86Y82 276 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 H1FOOQ8IZA3 346 aaPredicted RBP7.53□□□□□ -1.2
TDP1-204ENST00000545686 C1orf87Q8N0U7 546 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 ZNF611Q8N823 705 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 PLPPR1Q8TBJ4 325 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 SRXN1Q9BYN0 137 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 OR2H1Q9GZK4 316 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 PROK2Q9HC23 129 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 CRLF2Q9HC73 371 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 RNF150Q9ULK6 438 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 PI4KAP42356 2102 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 CCDC85CA6NKD9 419 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 PTBP3O95758 552 aaKnown RBP7.53□□□□□ -1.2
TDP1-204ENST00000545686 WNT2P09544 360 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 CCL3P10147 92 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 HIST1H1BP16401 226 aaKnown RBP7.53□□□□□ -1.2
TDP1-204ENST00000545686 NPBWR2P48146 333 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 PSG4Q00888 419 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 DEFA6Q01524 100 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 ZNF92Q03936 586 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 SPIN3Q5JUX0 258 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 ZNF343Q6P1L6 599 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 ZNF818PQ6ZRF7 136 aa7.53□□□□□ -1.2
TDP1-204ENST00000545686 HIST3H2BBQ8N257 126 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms