RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 SEMA6DQ8NFY4 1073 aa4.29□□□□□ -1.72
CLIP1-217ENST00000543205 OR2G2Q8NGZ5 317 aa4.29□□□□□ -1.72
CLIP1-217ENST00000543205 OR52N1Q8NH53 320 aa4.29□□□□□ -1.72
CLIP1-217ENST00000543205 TRMT10AQ8TBZ6 339 aaKnown RBP4.29□□□□□ -1.72
CLIP1-217ENST00000543205 GPX8Q8TED1 209 aa4.29□□□□□ -1.72
CLIP1-217ENST00000543205 CACNG8Q8WXS5 425 aa4.29□□□□□ -1.72
CLIP1-217ENST00000543205 RAB1CQ92928 201 aa4.29□□□□□ -1.72
CLIP1-217ENST00000543205 SNAPC3Q92966 411 aa4.29□□□□□ -1.72
CLIP1-217ENST00000543205 SLC30A2Q9BRI3 323 aa4.29□□□□□ -1.72
CLIP1-217ENST00000543205 ZNF649Q9BS31 505 aa4.29□□□□□ -1.72
CLIP1-217ENST00000543205 PAPOLGQ9BWT3 736 aaKnown RBP4.29□□□□□ -1.72
CLIP1-217ENST00000543205 CCDC90BQ9GZT6 254 aa4.29□□□□□ -1.72
CLIP1-217ENST00000543205 SEBOXQ9HB31 216 aaPredicted RBP4.29□□□□□ -1.72
CLIP1-217ENST00000543205 MYOZ1Q9NP98 299 aaPredicted RBP4.29□□□□□ -1.72
CLIP1-217ENST00000543205 BABAM2Q9NXR7 383 aa4.29□□□□□ -1.72
CLIP1-217ENST00000543205 CLEC2DQ9UHP7 191 aa4.29□□□□□ -1.72
CLIP1-217ENST00000543205 RTTNQ86VV8 2226 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 ZNF816-ZNF321PA0A0X1KG74 233 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 LOC390937A0A1W2PQ73 354 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 H0YL77 283 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 J3QR06 171 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 SYT7O43581 403 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 DSCAMO60469 2012 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 GMDSO60547 372 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 DHRS3O75911 302 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 LY6HO94772 140 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 HLA-DPB1P04440 258 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 RPSAP08865 295 aaKnown RBP4.28□□□□□ -1.72
CLIP1-217ENST00000543205 CSF3P09919 207 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 UBCP0CG48 685 aaKnown RBP4.28□□□□□ -1.72
CLIP1-217ENST00000543205 DAOP14920 347 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 ZNF12P17014 697 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 KIR3DL2P43630 455 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 TGM4P49221 684 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 SRP9P49458 86 aaKnown RBP4.28□□□□□ -1.72
CLIP1-217ENST00000543205 PDLIM4P50479 330 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 DSCR9P59020 149 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 NANOS3P60323 173 aaKnown RBP4.28□□□□□ -1.72
CLIP1-217ENST00000543205 SNRPEP62304 92 aaKnown RBP4.28□□□□□ -1.72
CLIP1-217ENST00000543205 RAB11AP62491 216 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 RIPPLY1Q0D2K3 151 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 PJVKQ0ZLH3 352 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 OR8B8Q15620 311 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 RAB11BQ15907 218 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 CLEC12BQ2HXU8 276 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 CCDC58Q4VC31 144 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 TMEM244Q5VVB8 128 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 RNLSQ5VYX0 342 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 RPL22L1Q6P5R6 122 aaKnown RBP4.28□□□□□ -1.72
CLIP1-217ENST00000543205 PRSS57Q6UWY2 283 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 CROCCP3Q8IVE0 287 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 SELENOHQ8IZQ5 122 aaKnown RBP4.28□□□□□ -1.72
CLIP1-217ENST00000543205 RDH10Q8IZV5 341 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 ZNF676Q8N7Q3 588 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 NANOGP1Q8N7R0 232 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 CCDC54Q8NEL0 328 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 OR10AD1Q8NGE0 317 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 OR8S1Q8NH09 359 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 OR5AK2Q8NH90 309 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 GLYATL2Q8WU03 294 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 PIGCQ92535 297 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 MRPL53Q96EL3 112 aaKnown RBP4.28□□□□□ -1.72
CLIP1-217ENST00000543205 C20orf173Q96LM9 149 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 TMEM246Q9BRR3 403 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 ADAT1Q9BUB4 502 aaKnown RBP4.28□□□□□ -1.72
CLIP1-217ENST00000543205 MND1Q9BWT6 205 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 CDCA4Q9BXL8 241 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 YTHDF1Q9BYJ9 559 aaKnown RBP4.28□□□□□ -1.72
CLIP1-217ENST00000543205 COMMD4Q9H0A8 199 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 DUSP21Q9H596 190 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 PLEKHA1Q9HB21 404 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 GPR173Q9NS66 373 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 PIGLQ9Y2B2 252 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 NIPBLQ6KC79 2804 aaeCLIP4.28□□□□□ -1.72
CLIP1-217ENST00000543205 DCHS2Q6V1P9 2916 aa4.28□□□□□ -1.72
CLIP1-217ENST00000543205 IGHV1-69-2A0A0G2JMI3 117 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 A0A1B0GTI1 187 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 LOC107986453A0A1B0GWG9 222 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 A0A1W2PPV4 95 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 TMEM212A6NML5 194 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 ZNF850A8MQ14 1090 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 PPIAL4DF5H284 164 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 F5H5P2 479 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 H3BSH0 61 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 CLN5O75503 358 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 CRTAPO75718 401 aaPredicted RBP4.28□□□□□ -1.73
CLIP1-217ENST00000543205 CST4P01036 141 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 IGLV3-1P01715 115 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 APOA1P02647 267 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 MT-ND2P03891 347 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 ISG15P05161 165 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 CD55P08174 381 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 ACKR3P25106 362 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 COMPP49747 757 aaPredicted RBP4.28□□□□□ -1.73
CLIP1-217ENST00000543205 GTF2A1P52655 376 aaPredicted RBP4.28□□□□□ -1.73
CLIP1-217ENST00000543205 WNT4P56705 351 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 TAS2R43P59537 309 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 GABARAPL2P60520 117 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 SSTP61278 116 aa4.28□□□□□ -1.73
CLIP1-217ENST00000543205 B2MP61769 119 aa4.28□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms