RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 DGCR2P98153 550 aa10.71□□□□□ -0.69
SS18-204ENST00000539244 PAX5Q02548 391 aa10.71□□□□□ -0.69
SS18-204ENST00000539244 ATXN7L3Q14CW9 347 aaPredicted RBP10.71□□□□□ -0.69
SS18-204ENST00000539244 RNF144BQ7Z419 303 aa10.71□□□□□ -0.69
SS18-204ENST00000539244 ZDHHC13Q8IUH4 622 aa10.71□□□□□ -0.69
SS18-204ENST00000539244 OR8H3Q8N146 312 aa10.71□□□□□ -0.69
SS18-204ENST00000539244 RFKQ969G6 155 aa10.71□□□□□ -0.69
SS18-204ENST00000539244 RFT1Q96AA3 541 aa10.71□□□□□ -0.69
SS18-204ENST00000539244 EME1Q96AY2 570 aa10.71□□□□□ -0.69
SS18-204ENST00000539244 NOL4LQ96MY1 436 aaPredicted RBP10.71□□□□□ -0.69
SS18-204ENST00000539244 CIB1Q99828 191 aa10.71□□□□□ -0.69
SS18-204ENST00000539244 GABARAPL3Q9BY60 117 aa10.71□□□□□ -0.69
SS18-204ENST00000539244 NPIPB11E5RHQ5 1161 aa10.7□□□□□ -0.7
SS18-204ENST00000539244 DEGS1O15121 323 aa10.7□□□□□ -0.7
SS18-204ENST00000539244 TMEM11P17152 192 aa10.7□□□□□ -0.7
SS18-204ENST00000539244 NFYBP25208 207 aa10.7□□□□□ -0.7
SS18-204ENST00000539244 RAB7AP51149 207 aa10.7□□□□□ -0.7
SS18-204ENST00000539244 ZP1P60852 638 aa10.7□□□□□ -0.7
SS18-204ENST00000539244 SLC35B1P78383 322 aa10.7□□□□□ -0.7
SS18-204ENST00000539244 MADCAM1Q13477 382 aa10.7□□□□□ -0.7
SS18-204ENST00000539244 ZNF695Q8IW36 515 aa10.7□□□□□ -0.7
SS18-204ENST00000539244 STPG2Q8N412 459 aa10.7□□□□□ -0.7
SS18-204ENST00000539244 DRAM1Q8N682 238 aa10.7□□□□□ -0.7
SS18-204ENST00000539244 ZNF565Q8N9K5 539 aa10.7□□□□□ -0.7
SS18-204ENST00000539244 KLHL30-AS1Q8NEE0 82 aa10.7□□□□□ -0.7
SS18-204ENST00000539244 OR51A4Q8NGJ6 313 aa10.7□□□□□ -0.7
SS18-204ENST00000539244 OR5D18Q8NGL1 313 aa10.7□□□□□ -0.7
SS18-204ENST00000539244 SLC7A6OSQ96CW6 309 aaPredicted RBP10.7□□□□□ -0.7
SS18-204ENST00000539244 SPACA5Q96QH8 159 aa10.7□□□□□ -0.7
SS18-204ENST00000539244 LSM4Q9Y4Z0 139 aaKnown RBP10.7□□□□□ -0.7
SS18-204ENST00000539244 SERPINE3A8MV23 424 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 NUDT19A8MXV4 375 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 J3QRE1 110 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 IL1AP01583 271 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 OCM2P0CE71 109 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 OCMP0CE72 109 aaPredicted RBP10.69□□□□□ -0.7
SS18-204ENST00000539244 DBTP11182 482 aaKnown RBP10.69□□□□□ -0.7
SS18-204ENST00000539244 POLR2IP36954 125 aaKnown RBP10.69□□□□□ -0.7
SS18-204ENST00000539244 GLP1RP43220 463 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 MTNR1BP49286 362 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 SCN1BQ07699 218 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 BNIP1Q12981 228 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 EBI3Q14213 229 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 DIAPH2-AS1Q14236 149 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 ELP2Q6IA86 826 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 SLC16A12Q6ZSM3 486 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 SLC35E3Q7Z769 313 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 FOXRED2Q8IWF2 684 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 OR10A7Q8NGE5 316 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 OR13A1Q8NGR1 328 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 OR13C9Q8NGT0 318 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 OR10AC1Q8NH08 325 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 HAVCR2Q8TDQ0 301 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 HRASLS5Q96KN8 279 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 OSBPL10Q9BXB5 764 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 NEK6Q9HC98 313 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 ING3Q9NXR8 418 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 CALYQ9NYX4 217 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 IDI2-AS1Q9NZ38 188 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 PSG11Q9UQ72 335 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 MYRFQ9Y2G1 1151 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 U3KQK5 164 aa10.69□□□□□ -0.7
SS18-204ENST00000539244 OR4C45A6NMZ5 311 aa10.68□□□□□ -0.7
SS18-204ENST00000539244 H0YJX3 145 aa10.68□□□□□ -0.7
SS18-204ENST00000539244 CCL24O00175 119 aa10.68□□□□□ -0.7
SS18-204ENST00000539244 SLC16A6O15403 523 aa10.68□□□□□ -0.7
SS18-204ENST00000539244 ZFPL1O95159 310 aa10.68□□□□□ -0.7
SS18-204ENST00000539244 IGKV1D-33P01593 117 aa10.68□□□□□ -0.7
SS18-204ENST00000539244 IGKV1-33P01594 117 aa10.68□□□□□ -0.7
SS18-204ENST00000539244 HTR1AP08908 422 aa10.68□□□□□ -0.7
SS18-204ENST00000539244 FASP25445 335 aa10.68□□□□□ -0.7
SS18-204ENST00000539244 C21orf33P30042 268 aaPredicted RBP10.68□□□□□ -0.7
SS18-204ENST00000539244 ZNF816Q0VGE8 651 aaPredicted RBP10.68□□□□□ -0.7
SS18-204ENST00000539244 HES1Q14469 280 aa10.68□□□□□ -0.7
SS18-204ENST00000539244 KISS1Q15726 138 aa10.68□□□□□ -0.7
SS18-204ENST00000539244 TEX38Q6PEX7 206 aa10.68□□□□□ -0.7
SS18-204ENST00000539244 RNF152Q8N8N0 203 aa10.68□□□□□ -0.7
SS18-204ENST00000539244 OR13C3Q8NGS6 347 aa10.68□□□□□ -0.7
SS18-204ENST00000539244 RAX2Q96IS3 184 aa10.68□□□□□ -0.7
SS18-204ENST00000539244 ZCCHC4Q9H5U6 513 aa10.68□□□□□ -0.7
SS18-204ENST00000539244 KIF25Q9UIL4 384 aa10.68□□□□□ -0.7
SS18-204ENST00000539244 LINC00527Q9UJ94 153 aa10.68□□□□□ -0.7
SS18-204ENST00000539244 HUWE1Q7Z6Z7 4374 aaKnown RBP10.67□□□□□ -0.7
SS18-204ENST00000539244 MEIKINA0A087WXM9 373 aa10.67□□□□□ -0.7
SS18-204ENST00000539244 TRAV24A0A0B4J272 114 aa10.67□□□□□ -0.7
SS18-204ENST00000539244 AP4M1O00189 453 aa10.67□□□□□ -0.7
SS18-204ENST00000539244 KCNJ3P48549 501 aa10.67□□□□□ -0.7
SS18-204ENST00000539244 IL13RA2Q14627 380 aa10.67□□□□□ -0.7
SS18-204ENST00000539244 NKAPLQ5M9Q1 402 aa10.67□□□□□ -0.7
SS18-204ENST00000539244 SLC25A30Q5SVS4 291 aa10.67□□□□□ -0.7
SS18-204ENST00000539244 RSBN1Q5VWQ0 802 aaPredicted RBP10.67□□□□□ -0.7
SS18-204ENST00000539244 TGIF2LXQ8IUE1 241 aa10.67□□□□□ -0.7
SS18-204ENST00000539244 IZUMO1Q8IYV9 350 aa10.67□□□□□ -0.7
SS18-204ENST00000539244 PARP16Q8N5Y8 322 aa10.67□□□□□ -0.7
SS18-204ENST00000539244 Q8N6K4 173 aa10.67□□□□□ -0.7
SS18-204ENST00000539244 Q8NFD4 153 aa10.67□□□□□ -0.7
SS18-204ENST00000539244 PXT1Q8NFP0 134 aa10.67□□□□□ -0.7
SS18-204ENST00000539244 CNIH3Q8TBE1 160 aa10.67□□□□□ -0.7
SS18-204ENST00000539244 TRUB1Q8WWH5 349 aaKnown RBP10.67□□□□□ -0.7
SS18-204ENST00000539244 TFAP2CQ92754 450 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms