RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 RBFOX1Q9NWB1 397 aaKnown RBP6.18□□□□□ -1.42
CD44-228ENST00000528455 TREM2Q9NZC2 230 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 NLKQ9UBE8 527 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 KAAG1Q9UBP8 84 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 WIPI2Q9Y4P8 454 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 ZNF469Q96JG9 3925 aaPredicted RBP6.18□□□□□ -1.42
CD44-228ENST00000528455 C2CD3Q4AC94 2353 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 FLNAP21333 2647 aaKnown RBP6.17□□□□□ -1.42
CD44-228ENST00000528455 OOEPA6NGQ2 149 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 RFPL4AA6NLU0 287 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 CLDN25C9JDP6 229 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 MCRIP1C9JLW8 97 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 RFPL4AL1F8VTS6 287 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 SULT1C2O00338 296 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 WNT9BO14905 357 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 CTDSPLO15194 276 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 SOCS1O15524 211 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 CYB5R3P00387 301 aaPredicted RBP6.17□□□□□ -1.42
CD44-228ENST00000528455 HLA-DQB1P01920 261 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 EIF4EP06730 217 aaKnown RBP6.17□□□□□ -1.42
CD44-228ENST00000528455 CDK2P24941 298 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 MRPS10P82664 201 aaKnown RBP6.17□□□□□ -1.42
CD44-228ENST00000528455 PLA2G7Q13093 441 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 PNLIPRP3Q17RR3 467 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 ZNF260Q3ZCT1 412 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 TMEM155Q4W5P6 130 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 SHEQ5VZ18 495 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 SFRP4Q6FHJ7 346 aaPredicted RBP6.17□□□□□ -1.42
CD44-228ENST00000528455 SIGIRRQ6IA17 410 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 PYHIN1Q6K0P9 492 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 CNIH2Q6PI25 160 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 PRSS57Q6UWY2 283 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 BIVMQ86UB2 503 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 LAX1Q8IWV1 398 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 MUC20Q8N307 709 aaPredicted RBP6.17□□□□□ -1.42
CD44-228ENST00000528455 ZNF561Q8N587 486 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 ANGPTL6Q8NI99 470 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 PPP1R35Q8TAP8 253 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 SLC25A38Q96DW6 304 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 RAB3CQ96E17 227 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 SDSLQ96GA7 329 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 SNX22Q96L94 193 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 KRTAP4-12Q9BQ66 201 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 KRTAP9-2Q9BYQ4 174 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 FAM234AQ9H0X4 552 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 RIMS4Q9H426 269 aaPredicted RBP6.17□□□□□ -1.42
CD44-228ENST00000528455 NCOR1P1Q9H4R4 102 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 ZNF665Q9H7R5 613 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 RCC2Q9P258 522 aaKnown RBP6.17□□□□□ -1.42
CD44-228ENST00000528455 DNAJB11Q9UBS4 358 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 CACNG2Q9Y698 323 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 NF1P21359 2839 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 ACANP16112 2415 aa6.17□□□□□ -1.42
CD44-228ENST00000528455 ARID1AO14497 2285 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 USF3Q68DE3 2245 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 IGKV1D-17A0A075B6S4 117 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 TRAV18A0A075B6X5 111 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 A0A0A6YYD4 124 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 SERPINE3A8MV23 424 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 LYNX1G3V0Z9 82 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 H7C1Q1 480 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 K7N7A8 449 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 SSX4O60224 188 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 NDUFS7O75251 213 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 PDCD6O75340 191 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 OR7C1O76099 320 aaPredicted RBP6.16□□□□□ -1.42
CD44-228ENST00000528455 OR2H2O95918 312 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 HAND1O96004 215 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 CSN2P05814 226 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 INHBBP09529 407 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 CSF3P09919 207 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 LYNX1P0DP58 116 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 HIST1H1DP16402 221 aaKnown RBP6.16□□□□□ -1.42
CD44-228ENST00000528455 EGR1P18146 543 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 GABRR1P24046 479 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 CHATP28329 748 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 DUSP1P28562 367 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 CD40LGP29965 261 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 PRSS3P35030 304 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 MDH2P40926 338 aaKnown RBP6.16□□□□□ -1.42
CD44-228ENST00000528455 KCNJ3P48549 501 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 PTH2RP49190 550 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 PDLIM4P50479 330 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 PPP5CP53041 499 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 ATP5J2P56134 94 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 BTG1P62324 171 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 PAX5Q02548 391 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 SCN1BQ07699 218 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 SRSF7Q16629 238 aaKnown RBP eCLIP6.16□□□□□ -1.42
CD44-228ENST00000528455 PIGYQ3MUY2 71 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 PLAC9Q5JTB6 97 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 TMEM69Q5SWH9 247 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 HACD4Q5VWC8 232 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 STUMQ69YW2 141 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 ZNF788Q6ZQV5 615 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 DCDC5Q6ZRR9 648 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 DNM1P46Q6ZS02 220 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 SLC36A1Q7Z2H8 476 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 CD177Q8N6Q3 437 aa6.16□□□□□ -1.42
CD44-228ENST00000528455 STPG3Q8N7X2 389 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms