RNA–Protein interactions for RNA: ENST00000527720.5

USH1C-207, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,278 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-207ENST00000527720 IL36RNQ9UBH0 155 aa13.11□□□□□ -0.31
USH1C-207ENST00000527720 J3QT63 122 aa13.11□□□□□ -0.31
USH1C-207ENST00000527720 TSPAN4O14817 238 aa13.11□□□□□ -0.31
USH1C-207ENST00000527720 IGHG3P01860 377 aa13.11□□□□□ -0.31
USH1C-207ENST00000527720 SCTP09683 121 aa13.11□□□□□ -0.31
USH1C-207ENST00000527720 TGFBR3Q03167 851 aa13.11□□□□□ -0.31
USH1C-207ENST00000527720 P4HA3Q7Z4N8 544 aa13.11□□□□□ -0.31
USH1C-207ENST00000527720 SLC35G3Q8N808 338 aa13.11□□□□□ -0.31
USH1C-207ENST00000527720 BOLLQ8N9W6 283 aaKnown RBP13.11□□□□□ -0.31
USH1C-207ENST00000527720 OR4D5Q8NGN0 318 aa13.11□□□□□ -0.31
USH1C-207ENST00000527720 SPIN2AQ99865 258 aa13.11□□□□□ -0.31
USH1C-207ENST00000527720 SPIN2BQ9BPZ2 258 aa13.11□□□□□ -0.31
USH1C-207ENST00000527720 NKX6-2Q9C056 277 aaPredicted RBP13.11□□□□□ -0.31
USH1C-207ENST00000527720 PARP11Q9NR21 331 aa13.11□□□□□ -0.31
USH1C-207ENST00000527720 POMT1Q9Y6A1 747 aa13.11□□□□□ -0.31
USH1C-207ENST00000527720 ZNF14P17017 642 aaPredicted RBP13.1□□□□□ -0.31
USH1C-207ENST00000527720 HERPUD1Q15011 391 aa13.1□□□□□ -0.31
USH1C-207ENST00000527720 ZNF880Q6PDB4 577 aa13.1□□□□□ -0.31
USH1C-207ENST00000527720 ATRAIDQ6UW56 229 aa13.1□□□□□ -0.31
USH1C-207ENST00000527720 TBC1D26Q86UD7 250 aa13.1□□□□□ -0.31
USH1C-207ENST00000527720 SVBPQ8N300 66 aa13.1□□□□□ -0.31
USH1C-207ENST00000527720 MRPL30Q8TCC3 161 aaKnown RBP13.1□□□□□ -0.31
USH1C-207ENST00000527720 ABHD14BQ96IU4 210 aa13.1□□□□□ -0.31
USH1C-207ENST00000527720 RTL8AQ9BWD3 113 aa13.1□□□□□ -0.31
USH1C-207ENST00000527720 ARID1AO14497 2285 aa13.1□□□□□ -0.31
USH1C-207ENST00000527720 BORCS7-ASMTA0A0B4J1R7 106 aa13.1□□□□□ -0.31
USH1C-207ENST00000527720 PIGBOS1A0A0B4J2F0 54 aa13.1□□□□□ -0.31
USH1C-207ENST00000527720 ABCD4O14678 606 aa13.1□□□□□ -0.31
USH1C-207ENST00000527720 LILRA1O75019 489 aa13.1□□□□□ -0.31
USH1C-207ENST00000527720 RCC1P18754 421 aaPredicted RBP13.1□□□□□ -0.31
USH1C-207ENST00000527720 IL32P24001 234 aa13.1□□□□□ -0.31
USH1C-207ENST00000527720 OR2T2Q6IF00 324 aa13.1□□□□□ -0.31
USH1C-207ENST00000527720 Q8IYB0 196 aa13.1□□□□□ -0.31
USH1C-207ENST00000527720 SPAG16Q8N0X2 631 aa13.1□□□□□ -0.31
USH1C-207ENST00000527720 OR52M1Q8NGK5 317 aa13.1□□□□□ -0.31
USH1C-207ENST00000527720 OR4A4PQ8NGN8 299 aa13.1□□□□□ -0.31
USH1C-207ENST00000527720 SECTM1Q8WVN6 248 aa13.1□□□□□ -0.31
USH1C-207ENST00000527720 CLCF1Q9UBD9 225 aa13.1□□□□□ -0.31
USH1C-207ENST00000527720 CARHSP1Q9Y2V2 147 aaKnown RBP13.1□□□□□ -0.31
USH1C-207ENST00000527720 UBE2J1Q9Y385 318 aaPredicted RBP13.1□□□□□ -0.31
USH1C-207ENST00000527720 MED6O75586 246 aa13.09□□□□□ -0.31
USH1C-207ENST00000527720 CA6P23280 308 aa13.09□□□□□ -0.31
USH1C-207ENST00000527720 MDH2P40926 338 aaKnown RBP13.09□□□□□ -0.31
USH1C-207ENST00000527720 CAV2P51636 162 aa13.09□□□□□ -0.31
USH1C-207ENST00000527720 GNMTQ14749 295 aa13.09□□□□□ -0.31
USH1C-207ENST00000527720 TSC22D1Q15714 1073 aa13.09□□□□□ -0.31
USH1C-207ENST00000527720 FAM76BQ5HYJ3 339 aa13.09□□□□□ -0.31
USH1C-207ENST00000527720 MEX3BQ6ZN04 569 aaKnown RBP13.09□□□□□ -0.31
USH1C-207ENST00000527720 ZNF818PQ6ZRF7 136 aa13.09□□□□□ -0.31
USH1C-207ENST00000527720 TSNAXQ99598 290 aaKnown RBP13.09□□□□□ -0.31
USH1C-207ENST00000527720 TREM2Q9NZC2 230 aa13.09□□□□□ -0.31
USH1C-207ENST00000527720 TRAV24A0A0B4J272 114 aa13.09□□□□□ -0.31
USH1C-207ENST00000527720 LRP5LA4QPB2 252 aa13.09□□□□□ -0.31
USH1C-207ENST00000527720 DNASE2O00115 360 aaPredicted RBP13.09□□□□□ -0.31
USH1C-207ENST00000527720 GALR2O43603 387 aaPredicted RBP13.09□□□□□ -0.31
USH1C-207ENST00000527720 CNOT4O95628 575 aaKnown RBP13.09□□□□□ -0.31
USH1C-207ENST00000527720 SEC11BP0C7V7 166 aa13.09□□□□□ -0.31
USH1C-207ENST00000527720 HOXB1P14653 301 aaPredicted RBP13.09□□□□□ -0.31
USH1C-207ENST00000527720 UBE2NP61088 152 aaKnown RBP13.09□□□□□ -0.31
USH1C-207ENST00000527720 SPIN3Q5JUX0 258 aa13.09□□□□□ -0.31
USH1C-207ENST00000527720 TMPRSS7Q7RTY8 843 aa13.09□□□□□ -0.31
USH1C-207ENST00000527720 ZNF695Q8IW36 515 aa13.09□□□□□ -0.31
USH1C-207ENST00000527720 CMTM1Q8IZ96 169 aa13.09□□□□□ -0.31
USH1C-207ENST00000527720 GAPTQ8N292 157 aa13.09□□□□□ -0.31
USH1C-207ENST00000527720 SUMF1Q8NBK3 374 aa13.09□□□□□ -0.31
USH1C-207ENST00000527720 IL22RA2Q969J5 263 aa13.09□□□□□ -0.31
USH1C-207ENST00000527720 ERGIC1Q969X5 290 aa13.09□□□□□ -0.31
USH1C-207ENST00000527720 IGKV1-6A0A0C4DH72 117 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 CLEC18AA5D8T8 446 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 SMPD2O60906 423 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 GLI4P10075 376 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 UCP1P25874 307 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 F2RL1P55085 397 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 IGFL2Q6UWQ7 119 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 BTNL8Q6UX41 500 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 CLEC18CQ8NCF0 446 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 USB1Q9BQ65 265 aaKnown RBP13.08□□□□□ -0.32
USH1C-207ENST00000527720 CABLES2Q9BTV7 478 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 SEC11CQ9BY50 192 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 HRH4Q9H3N8 390 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 CDH20Q9HBT6 801 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 FAM212BQ9NTI7 297 aaPredicted RBP13.08□□□□□ -0.32
USH1C-207ENST00000527720 DLL3Q9NYJ7 618 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 POLDIP2Q9Y2S7 368 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 HSPB6O14558 160 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 IGHV1-2P23083 117 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 S100GP29377 79 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 LPAR6P43657 344 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 PPP1CBP62140 327 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 HLA-DRB3P79483 266 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 SHEQ5VZ18 495 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 INO80CQ6PI98 192 aaPredicted RBP13.08□□□□□ -0.32
USH1C-207ENST00000527720 PCSK4Q6UW60 755 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 MOB1BQ7L9L4 216 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 SELENOHQ8IZQ5 122 aaKnown RBP13.08□□□□□ -0.32
USH1C-207ENST00000527720 DMBX1Q8NFW5 382 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 LYPD6BQ8NI32 183 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 ZNF488Q96MN9 340 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 GINS3Q9BRX5 216 aa13.08□□□□□ -0.32
USH1C-207ENST00000527720 SMIM3Q9BZL3 60 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms