RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 EDDM3BP56851 147 aa14.26□□□□□ -0.13
LIME1-208ENST00000493265 FAM189A2Q15884 450 aa14.26□□□□□ -0.13
LIME1-208ENST00000493265 WDR25Q64LD2 544 aaPredicted RBP14.26□□□□□ -0.13
LIME1-208ENST00000493265 FAM89BQ8N5H3 189 aa14.26□□□□□ -0.13
LIME1-208ENST00000493265 TPRX1Q8N7U7 411 aa14.26□□□□□ -0.13
LIME1-208ENST00000493265 OR10R2Q8NGX6 335 aa14.26□□□□□ -0.13
LIME1-208ENST00000493265 PPP1R35Q8TAP8 253 aa14.26□□□□□ -0.13
LIME1-208ENST00000493265 RAB3CQ96E17 227 aa14.26□□□□□ -0.13
LIME1-208ENST00000493265 ARHGAP5-AS1Q96IT6 56 aa14.26□□□□□ -0.13
LIME1-208ENST00000493265 FAAP24Q9BTP7 215 aa14.26□□□□□ -0.13
LIME1-208ENST00000493265 SHARPINQ9H0F6 387 aa14.26□□□□□ -0.13
LIME1-208ENST00000493265 ZMAT3Q9HA38 289 aaKnown RBP14.26□□□□□ -0.13
LIME1-208ENST00000493265 SEBOXQ9HB31 216 aaPredicted RBP14.26□□□□□ -0.13
LIME1-208ENST00000493265 SPACA1Q9HBV2 294 aa14.26□□□□□ -0.13
LIME1-208ENST00000493265 GNB3P16520 340 aa14.25□□□□□ -0.13
LIME1-208ENST00000493265 ZFP36P26651 326 aaKnown RBP14.25□□□□□ -0.13
LIME1-208ENST00000493265 AESQ08117 197 aa14.25□□□□□ -0.13
LIME1-208ENST00000493265 DYNC1I2Q13409 638 aaKnown RBP14.25□□□□□ -0.13
LIME1-208ENST00000493265 Q6ZTK2 550 aa14.25□□□□□ -0.13
LIME1-208ENST00000493265 BTN2A1Q7KYR7 527 aa14.25□□□□□ -0.13
LIME1-208ENST00000493265 LAX1Q8IWV1 398 aa14.25□□□□□ -0.13
LIME1-208ENST00000493265 OR8H2Q8N162 312 aa14.25□□□□□ -0.13
LIME1-208ENST00000493265 OR5D13Q8NGL4 314 aa14.25□□□□□ -0.13
LIME1-208ENST00000493265 S100A16Q96FQ6 103 aaKnown RBP14.25□□□□□ -0.13
LIME1-208ENST00000493265 SULT4A1Q9BR01 284 aa14.25□□□□□ -0.13
LIME1-208ENST00000493265 PECRQ9BY49 303 aa14.25□□□□□ -0.13
LIME1-208ENST00000493265 IFT22Q9H7X7 185 aa14.25□□□□□ -0.13
LIME1-208ENST00000493265 DIABLOQ9NR28 239 aa14.25□□□□□ -0.13
LIME1-208ENST00000493265 COL6A5A8TX70 2615 aa14.24□□□□□ -0.13
LIME1-208ENST00000493265 TRAV18A0A075B6X5 111 aa14.24□□□□□ -0.13
LIME1-208ENST00000493265 RAB27BO00194 218 aa14.24□□□□□ -0.13
LIME1-208ENST00000493265 MGST3O14880 152 aa14.24□□□□□ -0.13
LIME1-208ENST00000493265 CDK2P24941 298 aa14.24□□□□□ -0.13
LIME1-208ENST00000493265 TMEM50BP56557 158 aa14.24□□□□□ -0.13
LIME1-208ENST00000493265 RBM39Q14498 530 aaKnown RBP14.24□□□□□ -0.13
LIME1-208ENST00000493265 PLAC9Q5JTB6 97 aa14.24□□□□□ -0.13
LIME1-208ENST00000493265 OLFML2AQ68BL7 652 aa14.24□□□□□ -0.13
LIME1-208ENST00000493265 FAM185AQ8N0U4 392 aa14.24□□□□□ -0.13
LIME1-208ENST00000493265 PLPPR1Q8TBJ4 325 aa14.24□□□□□ -0.13
LIME1-208ENST00000493265 RAB40AQ8WXH6 277 aa14.24□□□□□ -0.13
LIME1-208ENST00000493265 FAM234AQ9H0X4 552 aa14.24□□□□□ -0.13
LIME1-208ENST00000493265 ABCG5Q9H222 651 aa14.24□□□□□ -0.13
LIME1-208ENST00000493265 MIXL1Q9H2W2 232 aa14.24□□□□□ -0.13
LIME1-208ENST00000493265 ETAA1Q9NY74 926 aa14.24□□□□□ -0.13
LIME1-208ENST00000493265 RCC2Q9P258 522 aaKnown RBP14.24□□□□□ -0.13
LIME1-208ENST00000493265 LOC105371242A0A075B767 164 aa14.23□□□□□ -0.13
LIME1-208ENST00000493265 FOXI3A8MTJ6 420 aaPredicted RBP14.23□□□□□ -0.13
LIME1-208ENST00000493265 H3BUI4 141 aa14.23□□□□□ -0.13
LIME1-208ENST00000493265 APOA1P02647 267 aa14.23□□□□□ -0.13
LIME1-208ENST00000493265 GLIPR1P48060 266 aa14.23□□□□□ -0.13
LIME1-208ENST00000493265 NPY4RP50391 375 aa14.23□□□□□ -0.13
LIME1-208ENST00000493265 TMEM249Q2WGJ8 235 aa14.23□□□□□ -0.13
LIME1-208ENST00000493265 CDNFQ49AH0 187 aa14.23□□□□□ -0.13
LIME1-208ENST00000493265 KRBOX4Q5JUW0 171 aa14.23□□□□□ -0.13
LIME1-208ENST00000493265 NXF2Q9GZY0 626 aaKnown RBP14.23□□□□□ -0.13
LIME1-208ENST00000493265 MRPS7Q9Y2R9 242 aaKnown RBP14.23□□□□□ -0.13
LIME1-208ENST00000493265 TRAV39A0A0B4J263 110 aa14.22□□□□□ -0.13
LIME1-208ENST00000493265 A0A1W2PQ09 198 aa14.22□□□□□ -0.13
LIME1-208ENST00000493265 C22orf46C9J442 243 aa14.22□□□□□ -0.13
LIME1-208ENST00000493265 FOXH1O75593 365 aa14.22□□□□□ -0.13
LIME1-208ENST00000493265 SCGNO76038 276 aa14.22□□□□□ -0.13
LIME1-208ENST00000493265 IGHV4-31P0DP07 118 aa14.22□□□□□ -0.13
LIME1-208ENST00000493265 HIST1H1DP16402 221 aaKnown RBP14.22□□□□□ -0.13
LIME1-208ENST00000493265 TMEM69Q5SWH9 247 aa14.22□□□□□ -0.13
LIME1-208ENST00000493265 CCDC107Q8WV48 283 aa14.22□□□□□ -0.13
LIME1-208ENST00000493265 COQ2Q96H96 371 aa14.22□□□□□ -0.13
LIME1-208ENST00000493265 DCTN5Q9BTE1 182 aa14.22□□□□□ -0.13
LIME1-208ENST00000493265 MMP27Q9H306 513 aa14.22□□□□□ -0.13
LIME1-208ENST00000493265 CHMP1AQ9HD42 196 aaPredicted RBP14.22□□□□□ -0.13
LIME1-208ENST00000493265 C19orf12Q9NSK7 152 aa14.22□□□□□ -0.13
LIME1-208ENST00000493265 EXTL2Q9UBQ6 330 aa14.22□□□□□ -0.13
LIME1-208ENST00000493265 AK3Q9UIJ7 227 aa14.22□□□□□ -0.13
LIME1-208ENST00000493265 KIF25Q9UIL4 384 aa14.22□□□□□ -0.13
LIME1-208ENST00000493265 ADAM30Q9UKF2 790 aa14.22□□□□□ -0.13
LIME1-208ENST00000493265 ELF5Q9UKW6 265 aaPredicted RBP14.22□□□□□ -0.13
LIME1-208ENST00000493265 ANK3Q12955 4377 aaKnown RBP14.22□□□□□ -0.13
LIME1-208ENST00000493265 FBN1P35555 2871 aaKnown RBP14.22□□□□□ -0.13
LIME1-208ENST00000493265 ATRQ13535 2644 aa14.22□□□□□ -0.13
LIME1-208ENST00000493265 CR1P17927 2039 aa14.21□□□□□ -0.13
LIME1-208ENST00000493265 MEIKINA0A087WXM9 373 aa14.21□□□□□ -0.13
LIME1-208ENST00000493265 PTHLHP12272 177 aa14.21□□□□□ -0.13
LIME1-208ENST00000493265 S100A5P33763 92 aa14.21□□□□□ -0.13
LIME1-208ENST00000493265 P2RX3P56373 397 aa14.21□□□□□ -0.13
LIME1-208ENST00000493265 RPL31P62899 125 aaKnown RBP14.21□□□□□ -0.13
LIME1-208ENST00000493265 ARFRP1Q13795 201 aa14.21□□□□□ -0.13
LIME1-208ENST00000493265 CD276Q5ZPR3 534 aa14.21□□□□□ -0.13
LIME1-208ENST00000493265 CNIH2Q6PI25 160 aa14.21□□□□□ -0.13
LIME1-208ENST00000493265 TRAPPC6BQ86SZ2 158 aa14.21□□□□□ -0.13
LIME1-208ENST00000493265 LINC01356Q8N9X3 169 aa14.21□□□□□ -0.13
LIME1-208ENST00000493265 OR4K15Q8NH41 348 aa14.21□□□□□ -0.13
LIME1-208ENST00000493265 SETD6Q8TBK2 473 aa14.21□□□□□ -0.13
LIME1-208ENST00000493265 MSI2Q96DH6 328 aaKnown RBP14.21□□□□□ -0.13
LIME1-208ENST00000493265 DIRAS2Q96HU8 199 aa14.21□□□□□ -0.13
LIME1-208ENST00000493265 CMTM3Q96MX0 182 aa14.21□□□□□ -0.13
LIME1-208ENST00000493265 HDHD3Q9BSH5 251 aaPredicted RBP14.21□□□□□ -0.13
LIME1-208ENST00000493265 HSF4Q9ULV5 492 aa14.21□□□□□ -0.13
LIME1-208ENST00000493265 SONP18583 2426 aaKnown RBP14.2□□□□□ -0.14
LIME1-208ENST00000493265 TMEM30CPA0ZSE6 113 aa14.2□□□□□ -0.14
LIME1-208ENST00000493265 FUOMA2VDF0 154 aa14.2□□□□□ -0.14
LIME1-208ENST00000493265 TMEM235A6NFC5 223 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms