RNA–Protein interactions for RNA: ENST00000488186.5

C9orf3-219, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,211 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-219ENST00000488186 IFT22Q9H7X7 185 aa12.98□□□□□ -0.33
C9orf3-219ENST00000488186 LIN7BQ9HAP6 207 aa12.98□□□□□ -0.33
C9orf3-219ENST00000488186 RAB22AQ9UL26 194 aa12.98□□□□□ -0.33
C9orf3-219ENST00000488186 PEX16Q9Y5Y5 336 aa12.98□□□□□ -0.33
C9orf3-219ENST00000488186 KPTNQ9Y664 436 aa12.98□□□□□ -0.33
C9orf3-219ENST00000488186 SVEP1Q4LDE5 3571 aa12.97□□□□□ -0.33
C9orf3-219ENST00000488186 MXRA5Q9NR99 2828 aa12.97□□□□□ -0.33
C9orf3-219ENST00000488186 TRGV10A0A0A0MS01 117 aa12.97□□□□□ -0.33
C9orf3-219ENST00000488186 TMEM14DPA8MWL7 114 aa12.97□□□□□ -0.33
C9orf3-219ENST00000488186 NOL3O60936 208 aaKnown RBP12.97□□□□□ -0.33
C9orf3-219ENST00000488186 AVPP01185 164 aa12.97□□□□□ -0.33
C9orf3-219ENST00000488186 SLC2A2P11168 524 aaPredicted RBP12.97□□□□□ -0.33
C9orf3-219ENST00000488186 SERPINB10P48595 397 aa12.97□□□□□ -0.33
C9orf3-219ENST00000488186 P2RX3P56373 397 aa12.97□□□□□ -0.33
C9orf3-219ENST00000488186 SCGB2A2Q13296 93 aa12.97□□□□□ -0.33
C9orf3-219ENST00000488186 NKAPLQ5M9Q1 402 aa12.97□□□□□ -0.33
C9orf3-219ENST00000488186 IDNKQ5T6J7 187 aa12.97□□□□□ -0.33
C9orf3-219ENST00000488186 RAB12Q6IQ22 244 aa12.97□□□□□ -0.33
C9orf3-219ENST00000488186 SFXN4Q6P4A7 337 aa12.97□□□□□ -0.33
C9orf3-219ENST00000488186 BRICD5Q6PL45 260 aa12.97□□□□□ -0.33
C9orf3-219ENST00000488186 ANKRD13BQ86YJ7 626 aa12.97□□□□□ -0.33
C9orf3-219ENST00000488186 CROCCP3Q8IVE0 287 aa12.97□□□□□ -0.33
C9orf3-219ENST00000488186 KIR3DL3Q8N743 410 aa12.97□□□□□ -0.33
C9orf3-219ENST00000488186 DACT3Q96B18 629 aaPredicted RBP12.97□□□□□ -0.33
C9orf3-219ENST00000488186 OPN4Q9UHM6 478 aa12.97□□□□□ -0.33
C9orf3-219ENST00000488186 MEIKINA0A087WXM9 373 aa12.96□□□□□ -0.33
C9orf3-219ENST00000488186 TMEM272A0A1B0GTI8 110 aa12.96□□□□□ -0.33
C9orf3-219ENST00000488186 M0R1W7 72 aa12.96□□□□□ -0.33
C9orf3-219ENST00000488186 CSN2P05814 226 aa12.96□□□□□ -0.33
C9orf3-219ENST00000488186 BLVRBP30043 206 aaPredicted RBP12.96□□□□□ -0.33
C9orf3-219ENST00000488186 TGFBR1P36897 503 aa12.96□□□□□ -0.33
C9orf3-219ENST00000488186 GLIPR1P48060 266 aa12.96□□□□□ -0.33
C9orf3-219ENST00000488186 VBP1P61758 197 aa12.96□□□□□ -0.33
C9orf3-219ENST00000488186 UNC119Q13432 240 aa12.96□□□□□ -0.33
C9orf3-219ENST00000488186 NR2C2APQ86WQ0 139 aa12.96□□□□□ -0.33
C9orf3-219ENST00000488186 CLVS1Q8IUQ0 354 aaPredicted RBP12.96□□□□□ -0.33
C9orf3-219ENST00000488186 ZNF565Q8N9K5 539 aa12.96□□□□□ -0.33
C9orf3-219ENST00000488186 LINC00312Q9Y6C7 94 aa12.96□□□□□ -0.33
C9orf3-219ENST00000488186 A0A0B4J203 849 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 ODAMA1E959 279 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 MEX3AA1L020 520 aaKnown RBP12.95□□□□□ -0.34
C9orf3-219ENST00000488186 METTL21EPA6NDL7 271 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 PDCD6O75340 191 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 IL1AP01583 271 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 GLAP06280 429 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 CFPP27918 469 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 VEGFCP49767 419 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 NCS1P62166 190 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 QRFPP83859 136 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 GPR157Q5UAW9 335 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 C1orf122Q6ZSJ8 110 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 VMO1Q7Z5L0 202 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 OR56B1Q8NGI3 324 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 LHX4Q969G2 390 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 UPRTQ96BW1 309 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 ZNF714Q96N38 554 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 TM2D1Q9BX74 207 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 LPAR5Q9H1C0 372 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 GAL3ST2Q9H3Q3 398 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 METTL8Q9H825 291 aaKnown RBP12.95□□□□□ -0.34
C9orf3-219ENST00000488186 PLEKHJ1Q9NW61 149 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 ETAA1Q9NY74 926 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 OR6C3Q9NZP0 311 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 ZNF581Q9P0T4 197 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 FBLN5Q9UBX5 448 aa12.95□□□□□ -0.34
C9orf3-219ENST00000488186 UBE2J1Q9Y385 318 aaPredicted RBP12.95□□□□□ -0.34
C9orf3-219ENST00000488186 IGHV3OR16-10A0A075B7F0 116 aa12.94□□□□□ -0.34
C9orf3-219ENST00000488186 TMEM30CPA0ZSE6 113 aa12.94□□□□□ -0.34
C9orf3-219ENST00000488186 UBE2QL1A1L167 161 aa12.94□□□□□ -0.34
C9orf3-219ENST00000488186 FAM157CP0CG43 387 aa12.94□□□□□ -0.34
C9orf3-219ENST00000488186 ZNF728P0DKX0 622 aa12.94□□□□□ -0.34
C9orf3-219ENST00000488186 CCL3L1P16619 93 aa12.94□□□□□ -0.34
C9orf3-219ENST00000488186 RPS19P39019 145 aaKnown RBP12.94□□□□□ -0.34
C9orf3-219ENST00000488186 ZNF273Q14593 569 aa12.94□□□□□ -0.34
C9orf3-219ENST00000488186 SLC35E4Q6ICL7 350 aa12.94□□□□□ -0.34
C9orf3-219ENST00000488186 C1orf229Q6ZS94 237 aaPredicted RBP12.94□□□□□ -0.34
C9orf3-219ENST00000488186 PHF21AQ96BD5 680 aa12.94□□□□□ -0.34
C9orf3-219ENST00000488186 NICN1Q9BSH3 213 aa12.94□□□□□ -0.34
C9orf3-219ENST00000488186 MS4A7Q9GZW8 240 aaPredicted RBP12.94□□□□□ -0.34
C9orf3-219ENST00000488186 NAA50Q9GZZ1 169 aaKnown RBP12.94□□□□□ -0.34
C9orf3-219ENST00000488186 SIRPDQ9H106 197 aa12.94□□□□□ -0.34
C9orf3-219ENST00000488186 ATG5Q9H1Y0 275 aa12.94□□□□□ -0.34
C9orf3-219ENST00000488186 SIRT7Q9NRC8 400 aa12.94□□□□□ -0.34
C9orf3-219ENST00000488186 KIF25Q9UIL4 384 aa12.94□□□□□ -0.34
C9orf3-219ENST00000488186 NUP50Q9UKX7 468 aa12.94□□□□□ -0.34
C9orf3-219ENST00000488186 TRAV40A0A0B4J280 105 aa12.93□□□□□ -0.34
C9orf3-219ENST00000488186 TMEM127O75204 238 aa12.93□□□□□ -0.34
C9orf3-219ENST00000488186 GABARAPO95166 117 aa12.93□□□□□ -0.34
C9orf3-219ENST00000488186 SNRPBP14678 240 aaKnown RBP12.93□□□□□ -0.34
C9orf3-219ENST00000488186 MMP9P14780 707 aa12.93□□□□□ -0.34
C9orf3-219ENST00000488186 RAB6AP20340 208 aa12.93□□□□□ -0.34
C9orf3-219ENST00000488186 FPR2P25090 351 aa12.93□□□□□ -0.34
C9orf3-219ENST00000488186 GLP1RP43220 463 aa12.93□□□□□ -0.34
C9orf3-219ENST00000488186 ERVFRD-1P60508 538 aa12.93□□□□□ -0.34
C9orf3-219ENST00000488186 NCR3LG1Q68D85 454 aa12.93□□□□□ -0.34
C9orf3-219ENST00000488186 Q6ZTK2 550 aa12.93□□□□□ -0.34
C9orf3-219ENST00000488186 USP43Q70EL4 1123 aa12.93□□□□□ -0.34
C9orf3-219ENST00000488186 PDZD9Q8IXQ8 264 aa12.93□□□□□ -0.34
C9orf3-219ENST00000488186 PLPPR1Q8TBJ4 325 aa12.93□□□□□ -0.34
C9orf3-219ENST00000488186 PTX4Q96A99 478 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms