RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 ZNF610Q8N9Z0 462 aa12.36□□□□□ -0.43
CHD3-211ENST00000481999 SARAFQ96BY9 339 aa12.36□□□□□ -0.43
CHD3-211ENST00000481999 SAT2Q96F10 170 aaPredicted RBP12.36□□□□□ -0.43
CHD3-211ENST00000481999 LIME1Q9H400 295 aa12.36□□□□□ -0.43
CHD3-211ENST00000481999 ZNF71Q9NQZ8 489 aaPredicted RBP12.36□□□□□ -0.43
CHD3-211ENST00000481999 MTCH1Q9NZJ7 389 aa12.36□□□□□ -0.43
CHD3-211ENST00000481999 PURGQ9UJV8 347 aaKnown RBP12.36□□□□□ -0.43
CHD3-211ENST00000481999 ZNF705EA8MWA4 302 aaPredicted RBP12.35□□□□□ -0.43
CHD3-211ENST00000481999 TNFSF13O75888 250 aa12.35□□□□□ -0.43
CHD3-211ENST00000481999 DTYMKP23919 212 aa12.35□□□□□ -0.43
CHD3-211ENST00000481999 GABRA6Q16445 453 aa12.35□□□□□ -0.43
CHD3-211ENST00000481999 Q6ZT83 130 aa12.35□□□□□ -0.43
CHD3-211ENST00000481999 MARS2Q96GW9 593 aaKnown RBP12.35□□□□□ -0.43
CHD3-211ENST00000481999 CNTNAP3BQ96NU0 1288 aa12.35□□□□□ -0.43
CHD3-211ENST00000481999 CNTNAP3Q9BZ76 1288 aa12.35□□□□□ -0.43
CHD3-211ENST00000481999 OR2S2Q9NQN1 319 aa12.35□□□□□ -0.43
CHD3-211ENST00000481999 PCDHB16Q9NRJ7 776 aa12.35□□□□□ -0.43
CHD3-211ENST00000481999 ATPIF1Q9UII2 106 aa12.35□□□□□ -0.43
CHD3-211ENST00000481999 MSRB2Q9Y3D2 182 aa12.35□□□□□ -0.43
CHD3-211ENST00000481999 COL12A1Q99715 3063 aa12.35□□□□□ -0.43
CHD3-211ENST00000481999 PQLC2LA1A4F0 135 aa12.35□□□□□ -0.43
CHD3-211ENST00000481999 CRYM-AS1A6NIL9 109 aa12.35□□□□□ -0.43
CHD3-211ENST00000481999 RHBDL1O75783 438 aa12.35□□□□□ -0.43
CHD3-211ENST00000481999 IFNA21P01568 189 aa12.35□□□□□ -0.43
CHD3-211ENST00000481999 OR5H8P0DN80 308 aa12.35□□□□□ -0.43
CHD3-211ENST00000481999 AKR1C2P52895 323 aa12.35□□□□□ -0.43
CHD3-211ENST00000481999 UBE2NP61088 152 aaKnown RBP12.35□□□□□ -0.43
CHD3-211ENST00000481999 AKR1C1Q04828 323 aa12.35□□□□□ -0.43
CHD3-211ENST00000481999 HAGHLQ6PII5 290 aaPredicted RBP12.35□□□□□ -0.43
CHD3-211ENST00000481999 ZDHHC23Q8IYP9 409 aa12.35□□□□□ -0.43
CHD3-211ENST00000481999 ABHD17AQ96GS6 310 aa12.35□□□□□ -0.43
CHD3-211ENST00000481999 PLCE1Q9P212 2302 aa12.34□□□□□ -0.43
CHD3-211ENST00000481999 GPR31O00270 319 aa12.34□□□□□ -0.43
CHD3-211ENST00000481999 COX5BP10606 129 aa12.34□□□□□ -0.43
CHD3-211ENST00000481999 CHATP28329 748 aa12.34□□□□□ -0.43
CHD3-211ENST00000481999 PJVKQ0ZLH3 352 aa12.34□□□□□ -0.43
CHD3-211ENST00000481999 SMCO1Q147U7 214 aa12.34□□□□□ -0.43
CHD3-211ENST00000481999 C10orf91Q5T1B1 145 aa12.34□□□□□ -0.43
CHD3-211ENST00000481999 ASCL4Q6XD76 172 aa12.34□□□□□ -0.43
CHD3-211ENST00000481999 Q6ZS92 163 aa12.34□□□□□ -0.43
CHD3-211ENST00000481999 PUSL1Q8N0Z8 303 aaKnown RBP12.34□□□□□ -0.43
CHD3-211ENST00000481999 EXTL1Q92935 676 aa12.34□□□□□ -0.43
CHD3-211ENST00000481999 GP6Q9HCN6 339 aa12.34□□□□□ -0.43
CHD3-211ENST00000481999 NECAP2Q9NVZ3 263 aa12.34□□□□□ -0.43
CHD3-211ENST00000481999 CARHSP1Q9Y2V2 147 aaKnown RBP12.34□□□□□ -0.43
CHD3-211ENST00000481999 HKR1P10072 659 aa12.34□□□□□ -0.43
CHD3-211ENST00000481999 ADCYAP1P18509 176 aa12.34□□□□□ -0.43
CHD3-211ENST00000481999 CXorf67Q86X51 503 aaPredicted RBP12.34□□□□□ -0.43
CHD3-211ENST00000481999 OR4A4PQ8NGN8 299 aa12.34□□□□□ -0.43
CHD3-211ENST00000481999 SMIM8Q96KF7 97 aa12.34□□□□□ -0.43
CHD3-211ENST00000481999 CMSS1Q9BQ75 279 aaKnown RBP12.34□□□□□ -0.43
CHD3-211ENST00000481999 TAF9BQ9HBM6 251 aa12.34□□□□□ -0.43
CHD3-211ENST00000481999 TUBD1Q9UJT1 453 aa12.34□□□□□ -0.43
CHD3-211ENST00000481999 FAM215AQ9Y5M1 114 aa12.34□□□□□ -0.43
CHD3-211ENST00000481999 KIAA2026Q5HYC2 2103 aa12.33□□□□□ -0.43
CHD3-211ENST00000481999 F8W036 122 aa12.33□□□□□ -0.44
CHD3-211ENST00000481999 K7EPK0 472 aa12.33□□□□□ -0.44
CHD3-211ENST00000481999 SMPD2O60906 423 aa12.33□□□□□ -0.44
CHD3-211ENST00000481999 RBM11P57052 281 aaKnown RBP12.33□□□□□ -0.44
CHD3-211ENST00000481999 BLOC1S1P78537 153 aa12.33□□□□□ -0.44
CHD3-211ENST00000481999 MST1LQ2TV78 715 aa12.33□□□□□ -0.44
CHD3-211ENST00000481999 CEACAM21Q3KPI0 293 aa12.33□□□□□ -0.44
CHD3-211ENST00000481999 TMEM200AQ86VY9 491 aa12.33□□□□□ -0.44
CHD3-211ENST00000481999 FOXRED2Q8IWF2 684 aa12.33□□□□□ -0.44
CHD3-211ENST00000481999 FAM71E2Q8N5Q1 922 aa12.33□□□□□ -0.44
CHD3-211ENST00000481999 STARD4Q96DR4 205 aa12.33□□□□□ -0.44
CHD3-211ENST00000481999 CST4P01036 141 aa12.33□□□□□ -0.44
CHD3-211ENST00000481999 RPL12P30050 165 aaKnown RBP12.33□□□□□ -0.44
CHD3-211ENST00000481999 GUCA2BQ16661 112 aa12.33□□□□□ -0.44
CHD3-211ENST00000481999 RPL7L1Q6DKI1 246 aaKnown RBP12.33□□□□□ -0.44
CHD3-211ENST00000481999 DHRS11Q6UWP2 260 aa12.33□□□□□ -0.44
CHD3-211ENST00000481999 IGFL3Q6UXB1 125 aa12.33□□□□□ -0.44
CHD3-211ENST00000481999 TREM1Q9NP99 234 aa12.33□□□□□ -0.44
CHD3-211ENST00000481999 TP53TG5Q9Y2B4 290 aa12.33□□□□□ -0.44
CHD3-211ENST00000481999 KCNIP3Q9Y2W7 256 aa12.33□□□□□ -0.44
CHD3-211ENST00000481999 LRBAP50851 2863 aa12.32□□□□□ -0.44
CHD3-211ENST00000481999 H0YL77 283 aa12.32□□□□□ -0.44
CHD3-211ENST00000481999 DEDDO75618 318 aa12.32□□□□□ -0.44
CHD3-211ENST00000481999 FCGR3AP08637 254 aa12.32□□□□□ -0.44
CHD3-211ENST00000481999 MPV17P39210 176 aa12.32□□□□□ -0.44
CHD3-211ENST00000481999 TGFBR3Q03167 851 aa12.32□□□□□ -0.44
CHD3-211ENST00000481999 TBC1D28Q2M2D7 210 aa12.32□□□□□ -0.44
CHD3-211ENST00000481999 GGNBP1Q5YKI7 109 aa12.32□□□□□ -0.44
CHD3-211ENST00000481999 WDR86Q86TI4 376 aa12.32□□□□□ -0.44
CHD3-211ENST00000481999 SPACA3Q8IXA5 215 aa12.32□□□□□ -0.44
CHD3-211ENST00000481999 SPAG16Q8N0X2 631 aa12.32□□□□□ -0.44
CHD3-211ENST00000481999 WDR31Q8NA23 367 aa12.32□□□□□ -0.44
CHD3-211ENST00000481999 SLC25A40Q8TBP6 338 aa12.32□□□□□ -0.44
CHD3-211ENST00000481999 NANOS1Q8WY41 292 aaKnown RBP12.32□□□□□ -0.44
CHD3-211ENST00000481999 WDR1O75083 606 aa12.32□□□□□ -0.44
CHD3-211ENST00000481999 GAPDHP04406 335 aaKnown RBP12.32□□□□□ -0.44
CHD3-211ENST00000481999 ZNF728P0DKX0 622 aa12.32□□□□□ -0.44
CHD3-211ENST00000481999 PIGPP57054 158 aa12.32□□□□□ -0.44
CHD3-211ENST00000481999 SRSF3P84103 164 aaKnown RBP12.32□□□□□ -0.44
CHD3-211ENST00000481999 WNT2BQ93097 391 aa12.32□□□□□ -0.44
CHD3-211ENST00000481999 SEC11CQ9BY50 192 aa12.32□□□□□ -0.44
CHD3-211ENST00000481999 HRH4Q9H3N8 390 aa12.32□□□□□ -0.44
CHD3-211ENST00000481999 UQCC1Q9NVA1 299 aa12.32□□□□□ -0.44
CHD3-211ENST00000481999 SH3BGRL2Q9UJC5 107 aa12.32□□□□□ -0.44
CHD3-211ENST00000481999 JTBO76095 146 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms