RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 FAM90A5PA8MXJ8 464 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 FAM90A23PA8MXZ1 464 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 APOA2P02652 100 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 FAM90A15PP0C7V4 464 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 FAM90A13PP0C7W8 464 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 FAM90A14PP0C7W9 464 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 FAM90A24PP0C7X0 464 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 RAB4BP61018 213 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 FGF12P61328 243 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 IL24Q13007 206 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 C1orf87Q8N0U7 546 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 CPEB3Q8NE35 698 aaKnown RBP12.7□□□□□ -0.38
HDAC6-220ENST00000477528 WNT5BQ9H1J7 359 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 HLA-DRB3P79483 266 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 PLAURQ03405 335 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 MDP1Q86V88 176 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 OR4A4PQ8NGN8 299 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 SLC25A28Q96A46 364 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 OR5AC2Q9NZP5 309 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 ZNF727A8MUV8 499 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 CDIPTO14735 213 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 TMEM267Q0VDI3 215 aaPredicted RBP12.7□□□□□ -0.38
HDAC6-220ENST00000477528 KIAA0141Q14154 515 aaPredicted RBP12.7□□□□□ -0.38
HDAC6-220ENST00000477528 USF2Q15853 346 aaPredicted RBP12.7□□□□□ -0.38
HDAC6-220ENST00000477528 ACOT6Q3I5F7 207 aaPredicted RBP12.7□□□□□ -0.38
HDAC6-220ENST00000477528 CLEC9AQ6UXN8 241 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 FAM219AQ8IW50 185 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 PRDM14Q9GZV8 571 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 OR2W1Q9Y3N9 320 aa12.7□□□□□ -0.38
HDAC6-220ENST00000477528 PTPRZ1P23471 2315 aaPredicted RBP12.7□□□□□ -0.38
HDAC6-220ENST00000477528 MFSD2BA6NFX1 497 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 SPINK2P20155 84 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 OR3A1P47881 315 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 ANKRD55Q3KP44 614 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 KLHDC3Q9BQ90 382 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 SLC35B3Q9H1N7 401 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.69□□□□□ -0.38
HDAC6-220ENST00000477528 ATP23Q9Y6H3 246 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 V9GYS6 101 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 ASXL3Q9C0F0 2248 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 NKX2-6A6NCS4 301 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 KCNAB3O43448 404 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 UMODP07911 640 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 ACP1P24666 158 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 IL3RAP26951 378 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 HTD2P86397 168 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 SEMA5BQ9P283 1151 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 HEXAP06865 529 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 ZNF83P51522 516 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 ALKBH6Q3KRA9 238 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 PLAC9Q5JTB6 97 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 INO80CQ6PI98 192 aaPredicted RBP12.69□□□□□ -0.38
HDAC6-220ENST00000477528 ZNF561Q8N587 486 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 MESP1Q9BRJ9 268 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 SEC11CQ9BY50 192 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 MED9Q9NWA0 146 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 DUXBA0A1W2PPF3 345 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 FAM3AP98173 230 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 PARP11Q9NR21 331 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 FZR1Q9UM11 496 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 CLDN16Q9Y5I7 305 aa12.69□□□□□ -0.38
HDAC6-220ENST00000477528 HELZP42694 1942 aaKnown RBP12.69□□□□□ -0.38
HDAC6-220ENST00000477528 SPRY3O43610 288 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 HOXA6P31267 233 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 WFDC8Q8IUA0 241 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 LRRC29Q8WV35 223 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 TVP23CQ96ET8 276 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 SSX3Q99909 188 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 OR2D2Q9H210 308 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 FBLN5Q9UBX5 448 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 UBE2L5PA0A1B0GUS4 154 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 MDFIC2A0A1B0GVS7 189 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 SOX7Q9BT81 388 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 CRYM-AS1A6NIL9 109 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 SEC11BP0C7V7 166 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 COX5BP10606 129 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 AKR1C3P42330 323 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 NDUFA6P56556 154 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 EWSR1Q01844 656 aaKnown RBP eCLIP12.68□□□□□ -0.38
HDAC6-220ENST00000477528 RTL8BQ17RB0 113 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 RFESDQ8TAC1 157 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 TIMP4Q99727 224 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 NPAS1Q99742 590 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 ENSAO43768 121 aaKnown RBP12.68□□□□□ -0.38
HDAC6-220ENST00000477528 CHST1O43916 411 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 GDF9O60383 454 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 FGF7P21781 194 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 PMELP40967 661 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 SLC25A40Q8TBP6 338 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 ADAMTS17Q8TE56 1095 aa12.68□□□□□ -0.38
HDAC6-220ENST00000477528 TRGV10A0A0A0MS01 117 aa12.67□□□□□ -0.38
HDAC6-220ENST00000477528 RRP8O43159 456 aaKnown RBP12.67□□□□□ -0.38
HDAC6-220ENST00000477528 HAND1O96004 215 aa12.67□□□□□ -0.38
HDAC6-220ENST00000477528 GAPDHP04406 335 aaKnown RBP12.67□□□□□ -0.38
HDAC6-220ENST00000477528 RFPL3SP0C7P2 107 aa12.67□□□□□ -0.38
HDAC6-220ENST00000477528 CDCP2Q5VXM1 449 aa12.67□□□□□ -0.38
HDAC6-220ENST00000477528 CORO2AQ92828 525 aa12.67□□□□□ -0.38
HDAC6-220ENST00000477528 MS4A7Q9GZW8 240 aaPredicted RBP12.67□□□□□ -0.38
HDAC6-220ENST00000477528 SERTAD4Q9NUC0 356 aa12.67□□□□□ -0.38
HDAC6-220ENST00000477528 TINAGQ9UJW2 476 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms