RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 DBTP11182 482 aaKnown RBP9.73□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 ZNF44P15621 663 aa9.73□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 PTGFRP43088 359 aa9.73□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 MTNR1BP49286 362 aa9.73□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 PRRX1P54821 245 aa9.73□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 CENPVQ7Z7K6 275 aaPredicted RBP9.73□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 LHFPL3Q86UP9 236 aa9.73□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 SERPINA12Q8IW75 414 aa9.73□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 OR4D6Q8NGJ1 314 aa9.73□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 OR5D14Q8NGL3 314 aa9.73□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 SGCDQ92629 289 aa9.73□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 RDH12Q96NR8 316 aa9.73□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 INPP5EQ9NRR6 644 aa9.73□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 ERVK13-1Q9NX77 482 aa9.73□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 OR6C3Q9NZP0 311 aa9.73□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 NBEAL2Q6ZNJ1 2754 aa9.72□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 A0A1W2PRX2 142 aa9.72□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 TCRBV4S1A1TA0A5B7 111 aa9.72□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 TMEM212A6NML5 194 aa9.72□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 J3QR06 171 aa9.72□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 K7EIL1 84 aa9.72□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 M0QZK8 103 aa9.72□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 CD33P20138 364 aa9.72□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 CEACAM3P40198 252 aa9.72□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 SCN1BQ07699 218 aa9.72□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 MRPL28Q13084 256 aaKnown RBP9.72□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 ZIK1Q3SY52 487 aaPredicted RBP9.72□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 ZNF691Q5VV52 312 aa9.72□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 CCDC144NLQ6NUI1 221 aa9.72□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 OR13A1Q8NGR1 328 aa9.72□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 OR9G1Q8NH87 305 aa9.72□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 CNIH3Q8TBE1 160 aa9.72□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 PDCD1LG2Q9BQ51 273 aa9.72□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 ALG8Q9BVK2 526 aa9.72□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 PCDHGB5Q9Y5G0 923 aa9.72□□□□□ -0.85
MSH5-SAPCD1-205ENST00000476085 A0A1W2PPI3 338 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 SH2D7A6NKC9 451 aaPredicted RBP9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 H0YJX3 145 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 TOR1AO14656 332 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 MPZL2O60487 215 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 TMEM225BP0DP42 221 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 ARHGDIBP52566 201 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 KRTAP10-11P60412 298 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 EGFEM1PQ0D2K5 195 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 RAB40BQ12829 278 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 EBI3Q14213 229 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 IL13RA2Q14627 380 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 ATXN7L3Q14CW9 347 aaPredicted RBP9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 ARSJQ5FYB0 599 aaPredicted RBP9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 RSBN1Q5VWQ0 802 aaPredicted RBP9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 ETV3LQ6ZN32 361 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 SLC16A12Q6ZSM3 486 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 OSR2Q8N2R0 312 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 ZNF565Q8N9K5 539 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 OR10A7Q8NGE5 316 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 OR51A2Q8NGJ7 313 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 RGP1Q92546 391 aaPredicted RBP9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 RCC1LQ96I51 464 aaKnown RBP9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 MYCBPQ99417 103 aaPredicted RBP9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 SLC29A1Q99808 456 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 JAM3Q9BX67 310 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 IFT22Q9H7X7 185 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 NEK6Q9HC98 313 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 CALYQ9NYX4 217 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 KIF25Q9UIL4 384 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 PSG11Q9UQ72 335 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 GMPPBQ9Y5P6 360 aa9.71□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 GABRPO00591 440 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 FADS2O95864 444 aaKnown RBP9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 IL1AP01583 271 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 OCM2P0CE71 109 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 OCMP0CE72 109 aaPredicted RBP9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 FAM106CPP0CH98 169 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 LIMS3P0CW19 117 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 LIMS4P0CW20 117 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 MNDAP41218 407 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 OR3A4PP47883 348 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 KCNJ3P48549 501 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 DIAPH2-AS1Q14236 149 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 NHLRC3Q5JS37 347 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 PACRGLQ8N7B6 248 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 LINC00482Q8N8I6 264 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 ZNF555Q8NEP9 628 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 OR4X2Q8NGF9 303 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 OR52I1Q8NGK6 324 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 OR5AK2Q8NH90 309 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 PLPPR1Q8TBJ4 325 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 APH1BQ8WW43 257 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 MRPL48Q96GC5 212 aaKnown RBP9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 Q96MT0 163 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 AMBNQ9NP70 447 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 PCDHB16Q9NRJ7 776 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 IDI2-AS1Q9NZ38 188 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 ZNF581Q9P0T4 197 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 MOB4Q9Y3A3 225 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 HSPE1-MOB4S4R3N1 261 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 TENM3Q9P273 2699 aa9.7□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 LOC100130705A0A1B0GUX0 176 aa9.69□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 FGF16O43320 207 aa9.69□□□□□ -0.86
MSH5-SAPCD1-205ENST00000476085 DUS4LO95620 317 aaKnown RBP9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms