RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 TIMP3P35625 211 aa8.33□□□□□ -1.08
USP39-214ENST00000474572 FXYD4P59646 89 aa8.33□□□□□ -1.08
USP39-214ENST00000474572 HERV-K104P61576 105 aa8.33□□□□□ -1.08
USP39-214ENST00000474572 ATXN7L3Q14CW9 347 aaPredicted RBP8.33□□□□□ -1.08
USP39-214ENST00000474572 ABCA11PQ4W5N1 156 aa8.33□□□□□ -1.08
USP39-214ENST00000474572 C1orf185Q5T7R7 199 aa8.33□□□□□ -1.08
USP39-214ENST00000474572 GGNBP1Q5YKI7 109 aa8.33□□□□□ -1.08
USP39-214ENST00000474572 ZNF324BQ6AW86 544 aaPredicted RBP8.33□□□□□ -1.08
USP39-214ENST00000474572 MOB1BQ7L9L4 216 aa8.33□□□□□ -1.08
USP39-214ENST00000474572 BHLHA15Q7RTS1 189 aaPredicted RBP8.33□□□□□ -1.08
USP39-214ENST00000474572 LGI3Q8N145 548 aa8.33□□□□□ -1.08
USP39-214ENST00000474572 EIF4E3Q8N5X7 224 aaKnown RBP8.33□□□□□ -1.08
USP39-214ENST00000474572 INO80EQ8NBZ0 244 aaPredicted RBP8.33□□□□□ -1.08
USP39-214ENST00000474572 OR4A4PQ8NGN8 299 aa8.33□□□□□ -1.08
USP39-214ENST00000474572 SNIP1Q8TAD8 396 aaKnown RBP8.33□□□□□ -1.08
USP39-214ENST00000474572 GLYATL2Q8WU03 294 aa8.33□□□□□ -1.08
USP39-214ENST00000474572 DCUN1D4Q92564 292 aa8.33□□□□□ -1.08
USP39-214ENST00000474572 MRPL24Q96A35 216 aaKnown RBP8.33□□□□□ -1.08
USP39-214ENST00000474572 CCDC120Q96HB5 630 aa8.33□□□□□ -1.08
USP39-214ENST00000474572 CXorf58Q96LI9 332 aa8.33□□□□□ -1.08
USP39-214ENST00000474572 DMRTA2Q96SC8 542 aa8.33□□□□□ -1.08
USP39-214ENST00000474572 OPN3Q9H1Y3 402 aaPredicted RBP8.33□□□□□ -1.08
USP39-214ENST00000474572 CYTL1Q9NRR1 136 aa8.33□□□□□ -1.08
USP39-214ENST00000474572 PCDHB10Q9UN67 800 aa8.33□□□□□ -1.08
USP39-214ENST00000474572 WASF3Q9UPY6 502 aa8.33□□□□□ -1.08
USP39-214ENST00000474572 IGHV2OR16-5A0A0B4J2B6 119 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 DUXBA0A1W2PPF3 345 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 MFSD2BA6NFX1 497 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 MSGN1A6NI15 193 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 K7EM74 188 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 DEGS1O15121 323 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 SHOXO15266 292 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 AGFG2O95081 481 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 ZNF205O95201 554 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 IFNA21P01568 189 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 HOXD4P09016 255 aaPredicted RBP8.32□□□□□ -1.08
USP39-214ENST00000474572 LMO1P25800 156 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 DUSP1P28562 367 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 GNRHRP30968 328 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 CEACAM8P31997 349 aaPredicted RBP8.32□□□□□ -1.08
USP39-214ENST00000474572 LUMP51884 338 aaPredicted RBP8.32□□□□□ -1.08
USP39-214ENST00000474572 SRPXP78539 464 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 OR8G1Q15617 311 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 IGFBP7Q16270 282 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 IAH1Q2TAA2 248 aaPredicted RBP8.32□□□□□ -1.08
USP39-214ENST00000474572 KRTCAP3Q53RY4 240 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 SPIN3Q5JUX0 258 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 C20orf204Q6ZNR8 217 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 HSD17B13Q7Z5P4 300 aaPredicted RBP8.32□□□□□ -1.08
USP39-214ENST00000474572 C11orf53Q8IXP5 236 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 PDZD9Q8IXQ8 264 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 SPERTQ8NA61 448 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 OR11L1Q8NGX0 322 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 LHFPL5Q8TAF8 219 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 PCNPQ8WW12 178 aaKnown RBP8.32□□□□□ -1.08
USP39-214ENST00000474572 ZNF471Q9BX82 626 aaPredicted RBP8.32□□□□□ -1.08
USP39-214ENST00000474572 SLC5A7Q9GZV3 580 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 SHARPINQ9H0F6 387 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 CXXC4Q9H2H0 198 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 BARX1Q9HBU1 254 aaPredicted RBP8.32□□□□□ -1.08
USP39-214ENST00000474572 MBNL3Q9NUK0 354 aaKnown RBP8.32□□□□□ -1.08
USP39-214ENST00000474572 WIPI2Q9Y4P8 454 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 TTC28Q96AY4 2481 aa8.32□□□□□ -1.08
USP39-214ENST00000474572 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.31□□□□□ -1.08
USP39-214ENST00000474572 C3orf85A0A1B0GTC6 90 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 H0YL77 283 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.31□□□□□ -1.08
USP39-214ENST00000474572 GPR31O00270 319 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 SLC33A1O00400 549 aaPredicted RBP8.31□□□□□ -1.08
USP39-214ENST00000474572 MPPED1O15442 326 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 DEDDO75618 318 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 PTBP3O95758 552 aaKnown RBP8.31□□□□□ -1.08
USP39-214ENST00000474572 OR2H2O95918 312 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 TK1P04183 234 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 FGF2P09038 288 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 TPT1P13693 172 aaKnown RBP8.31□□□□□ -1.08
USP39-214ENST00000474572 SNTB1Q13884 538 aaKnown RBP8.31□□□□□ -1.08
USP39-214ENST00000474572 HMGN3Q15651 99 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 ZNF718Q3SXZ3 478 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 PHLDA2Q53GA4 152 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 BEX5Q5H9J7 111 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 TIMM23BQ5SRD1 257 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 THOC7Q6I9Y2 204 aaKnown RBP8.31□□□□□ -1.08
USP39-214ENST00000474572 ZNF474Q6S9Z5 364 aaPredicted RBP8.31□□□□□ -1.08
USP39-214ENST00000474572 ZNF497Q6ZNH5 498 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 Q6ZR03 302 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 H1FOOQ8IZA3 346 aaPredicted RBP8.31□□□□□ -1.08
USP39-214ENST00000474572 PRR7Q8TB68 274 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 PLPPR1Q8TBJ4 325 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 FAM57AQ8TBR7 257 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 NEK7Q8TDX7 302 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 RBPMSQ93062 196 aaKnown RBP8.31□□□□□ -1.08
USP39-214ENST00000474572 TMEM56Q96MV1 263 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 TP53RKQ96S44 253 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 SFXN3Q9BWM7 321 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 DNTTIP1Q9H147 329 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 SEBOXQ9HB31 216 aaPredicted RBP8.31□□□□□ -1.08
USP39-214ENST00000474572 ZFP57Q9NU63 452 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 TMEM100Q9NV29 134 aa8.31□□□□□ -1.08
USP39-214ENST00000474572 SDHAF2Q9NX18 166 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms