RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 WDYHV1Q96HA8 205 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 YLPM1P49750 1951 aaKnown RBP11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 NKX2-6A6NCS4 301 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 ADAM20O43506 726 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 PPYP01298 95 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 CD80P33681 288 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 CAMLGP49069 296 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 CYCSP99999 105 aaKnown RBP11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 PNLIPRP3Q17RR3 467 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 ACTBL2Q562R1 376 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 SUMF2Q8NBJ7 301 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 OR6K3Q8NGY3 331 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 FAM213BQ8TBF2 198 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 LEAP2Q969E1 77 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 WBP1Q96G27 269 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 TAF9BQ9HBM6 251 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 SH2D2AQ9NP31 389 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 NCKAP5O14513 1909 aa11.78□□□□□ -0.52
CCDC88A-211ENST00000471947 FIGNL2A6NMB9 653 aa11.77□□□□□ -0.52
CCDC88A-211ENST00000471947 MMP7P09237 267 aaPredicted RBP11.77□□□□□ -0.52
CCDC88A-211ENST00000471947 KCNMB1Q16558 191 aa11.77□□□□□ -0.52
CCDC88A-211ENST00000471947 OR8G2PQ6IF36 304 aa11.77□□□□□ -0.52
CCDC88A-211ENST00000471947 BSCL2Q96G97 398 aaPredicted RBP11.77□□□□□ -0.52
CCDC88A-211ENST00000471947 C2orf50Q96LR7 162 aa11.77□□□□□ -0.52
CCDC88A-211ENST00000471947 COL4A2P08572 1712 aa11.77□□□□□ -0.52
CCDC88A-211ENST00000471947 ETV2O00321 342 aaPredicted RBP11.77□□□□□ -0.53
CCDC88A-211ENST00000471947 TOR1AO14656 332 aa11.77□□□□□ -0.53
CCDC88A-211ENST00000471947 TERTO14746 1132 aaKnown RBP11.77□□□□□ -0.53
CCDC88A-211ENST00000471947 IGHV1-2P23083 117 aa11.77□□□□□ -0.53
CCDC88A-211ENST00000471947 S100GP29377 79 aa11.77□□□□□ -0.53
CCDC88A-211ENST00000471947 OR3A1P47881 315 aa11.77□□□□□ -0.53
CCDC88A-211ENST00000471947 BAP18Q8IXM2 172 aa11.77□□□□□ -0.53
CCDC88A-211ENST00000471947 SARAFQ96BY9 339 aa11.77□□□□□ -0.53
CCDC88A-211ENST00000471947 GNG12Q9UBI6 72 aa11.77□□□□□ -0.53
CCDC88A-211ENST00000471947 FBXL17Q9UF56 701 aa11.77□□□□□ -0.53
CCDC88A-211ENST00000471947 PROCRQ9UNN8 238 aa11.77□□□□□ -0.53
CCDC88A-211ENST00000471947 CENPEQ02224 2701 aa11.77□□□□□ -0.53
CCDC88A-211ENST00000471947 ATXN7O15265 892 aaPredicted RBP11.77□□□□□ -0.53
CCDC88A-211ENST00000471947 MELTFP08582 738 aa11.77□□□□□ -0.53
CCDC88A-211ENST00000471947 SUPT4H1P63272 117 aaKnown RBP11.77□□□□□ -0.53
CCDC88A-211ENST00000471947 CLLU1Q5K131 121 aa11.77□□□□□ -0.53
CCDC88A-211ENST00000471947 TMEM182Q6ZP80 229 aaPredicted RBP11.77□□□□□ -0.53
CCDC88A-211ENST00000471947 TBC1D26Q86UD7 250 aa11.77□□□□□ -0.53
CCDC88A-211ENST00000471947 SLC35G3Q8N808 338 aa11.77□□□□□ -0.53
CCDC88A-211ENST00000471947 IL2RAP01589 272 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 ARL6IP1Q15041 203 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 CXorf66Q5JRM2 361 aaPredicted RBP11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 PLA2G2CQ5R387 149 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 OR5T1Q8NG75 326 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 SLC25A32Q9H2D1 315 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 NUP50Q9UKX7 468 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 FBXO7Q9Y3I1 522 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 RELNP78509 3460 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 IGKV1D-13A0A0B4J2D9 117 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 BCL2L11O43521 198 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 IGKV1-13P0DP09 117 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 NAT2P11245 290 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 TMEM33P57088 247 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 PLEKHN1Q494U1 663 aaPredicted RBP11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 ZNF573Q86YE8 665 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 SLC38A6Q8IZM9 456 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 GTF3AQ92664 365 aaKnown RBP11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 TP53RKQ96S44 253 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 GHRLQ9UBU3 117 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 MYO18BQ8IUG5 2567 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 RPS10-NUDT3A0A1W2PQS6 291 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 RNF222A6NCQ9 220 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 ZNF883P0CG24 379 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 CEACAM6P40199 344 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 SSBP1Q04837 148 aaKnown RBP11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 FAM27E3Q08E93 113 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 CLPPQ16740 277 aaPredicted RBP11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 FAM214BQ7L5A3 538 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 MUCL1Q96DR8 90 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 KIF25Q9UIL4 384 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 ZNF391Q9UJN7 358 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 TNFSF18Q9UNG2 199 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 LHX6Q9UPM6 363 aa11.76□□□□□ -0.53
CCDC88A-211ENST00000471947 SMCO3A2RU48 225 aa11.75□□□□□ -0.53
CCDC88A-211ENST00000471947 GPR31O00270 319 aa11.75□□□□□ -0.53
CCDC88A-211ENST00000471947 GALR2O43603 387 aaPredicted RBP11.75□□□□□ -0.53
CCDC88A-211ENST00000471947 TMEM267Q0VDI3 215 aaPredicted RBP11.75□□□□□ -0.53
CCDC88A-211ENST00000471947 RIPPLY2Q5TAB7 128 aa11.75□□□□□ -0.53
CCDC88A-211ENST00000471947 IP6K3Q96PC2 410 aa11.75□□□□□ -0.53
CCDC88A-211ENST00000471947 RTL8AQ9BWD3 113 aa11.75□□□□□ -0.53
CCDC88A-211ENST00000471947 CDRT15L2A8MXV6 281 aa11.75□□□□□ -0.53
CCDC88A-211ENST00000471947 OPN1MWP04001 364 aa11.75□□□□□ -0.53
CCDC88A-211ENST00000471947 OPN1MW2P0DN77 364 aa11.75□□□□□ -0.53
CCDC88A-211ENST00000471947 OPN1MW3P0DN78 364 aa11.75□□□□□ -0.53
CCDC88A-211ENST00000471947 UBA52P62987 128 aaKnown RBP11.75□□□□□ -0.53
CCDC88A-211ENST00000471947 FAM76BQ5HYJ3 339 aa11.75□□□□□ -0.53
CCDC88A-211ENST00000471947 PEAR1Q5VY43 1037 aaPredicted RBP11.75□□□□□ -0.53
CCDC88A-211ENST00000471947 PTX4Q96A99 478 aa11.75□□□□□ -0.53
CCDC88A-211ENST00000471947 POM121L2Q96KW2 1035 aa11.75□□□□□ -0.53
CCDC88A-211ENST00000471947 C20orf204Q6ZNR8 217 aa11.75□□□□□ -0.53
CCDC88A-211ENST00000471947 Q6ZRG5 221 aa11.75□□□□□ -0.53
CCDC88A-211ENST00000471947 CCDC71LQ8N9Z2 235 aa11.75□□□□□ -0.53
CCDC88A-211ENST00000471947 BPIFCQ8NFQ6 507 aa11.75□□□□□ -0.53
CCDC88A-211ENST00000471947 GLYATL2Q8WU03 294 aa11.75□□□□□ -0.53
CCDC88A-211ENST00000471947 LRRC46Q96FV0 321 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms