RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 SMIM8Q96KF7 97 aa16.32■□□□□ 0.2
VIM-203ENST00000469543 LINC01387J3KSC0 135 aa16.32■□□□□ 0.2
VIM-203ENST00000469543 TOR1AO14656 332 aa16.32■□□□□ 0.2
VIM-203ENST00000469543 OMGP23515 440 aa16.32■□□□□ 0.2
VIM-203ENST00000469543 NPBWR1P48145 328 aa16.32■□□□□ 0.2
VIM-203ENST00000469543 FGF12P61328 243 aa16.32■□□□□ 0.2
VIM-203ENST00000469543 PJVKQ0ZLH3 352 aa16.32■□□□□ 0.2
VIM-203ENST00000469543 NRN1LQ496H8 165 aa16.32■□□□□ 0.2
VIM-203ENST00000469543 RSRP1Q9BUV0 290 aa16.32■□□□□ 0.2
VIM-203ENST00000469543 Q9N2K0 584 aa16.32■□□□□ 0.2
VIM-203ENST00000469543 MMP26Q9NRE1 261 aa16.32■□□□□ 0.2
VIM-203ENST00000469543 CCL28Q9NRJ3 127 aa16.32■□□□□ 0.2
VIM-203ENST00000469543 KMT2EQ8IZD2 1858 aa16.32■□□□□ 0.2
VIM-203ENST00000469543 AKAP13Q12802 2813 aa16.32■□□□□ 0.2
VIM-203ENST00000469543 TRAPPC2LH3BP13 241 aa16.32■□□□□ 0.2
VIM-203ENST00000469543 NME2P1O60361 137 aa16.32■□□□□ 0.2
VIM-203ENST00000469543 CD80P33681 288 aa16.32■□□□□ 0.2
VIM-203ENST00000469543 MDP1Q86V88 176 aa16.32■□□□□ 0.2
VIM-203ENST00000469543 PRR18Q8N4B5 295 aa16.32■□□□□ 0.2
VIM-203ENST00000469543 MDS2Q8NDY4 140 aa16.32■□□□□ 0.2
VIM-203ENST00000469543 NAPSAO96009 420 aa16.31■□□□□ 0.2
VIM-203ENST00000469543 ALKBH6Q3KRA9 238 aa16.31■□□□□ 0.2
VIM-203ENST00000469543 UQCC3Q6UW78 93 aa16.31■□□□□ 0.2
VIM-203ENST00000469543 ETV3LQ6ZN32 361 aa16.31■□□□□ 0.2
VIM-203ENST00000469543 Q6ZRG5 221 aa16.31■□□□□ 0.2
VIM-203ENST00000469543 HSD17B11Q8NBQ5 300 aa16.31■□□□□ 0.2
VIM-203ENST00000469543 DMBX1Q8NFW5 382 aa16.31■□□□□ 0.2
VIM-203ENST00000469543 ZFHX2Q9C0A1 2572 aaPredicted RBP16.31■□□□□ 0.2
VIM-203ENST00000469543 H7C1Q1 480 aa16.31■□□□□ 0.2
VIM-203ENST00000469543 CLN3Q13286 438 aa16.31■□□□□ 0.2
VIM-203ENST00000469543 CXorf66Q5JRM2 361 aaPredicted RBP16.31■□□□□ 0.2
VIM-203ENST00000469543 SYT3Q9BQG1 590 aa16.31■□□□□ 0.2
VIM-203ENST00000469543 SLC22A20A6NK97 555 aa16.3■□□□□ 0.2
VIM-203ENST00000469543 KLRC4-KLRK1H3BQV0 150 aa16.3■□□□□ 0.2
VIM-203ENST00000469543 POLR2GP62487 172 aaKnown RBP eCLIP16.3■□□□□ 0.2
VIM-203ENST00000469543 ARG2P78540 354 aa16.3■□□□□ 0.2
VIM-203ENST00000469543 PLP2Q04941 152 aa16.3■□□□□ 0.2
VIM-203ENST00000469543 IZUMO4Q1ZYL8 232 aa16.3■□□□□ 0.2
VIM-203ENST00000469543 AKIRIN2Q53H80 203 aa16.3■□□□□ 0.2
VIM-203ENST00000469543 LGI3Q8N145 548 aa16.3■□□□□ 0.2
VIM-203ENST00000469543 SUMF2Q8NBJ7 301 aa16.3■□□□□ 0.2
VIM-203ENST00000469543 IL1F10Q8WWZ1 152 aa16.3■□□□□ 0.2
VIM-203ENST00000469543 OR5P3Q8WZ94 311 aa16.3■□□□□ 0.2
VIM-203ENST00000469543 RCL1Q9Y2P8 373 aaKnown RBP16.3■□□□□ 0.2
VIM-203ENST00000469543 TNRC6AQ8NDV7 1962 aaKnown RBP16.3■□□□□ 0.2
VIM-203ENST00000469543 ZNF724A8MTY0 619 aa16.3■□□□□ 0.2
VIM-203ENST00000469543 MKXQ8IYA7 352 aa16.3■□□□□ 0.2
VIM-203ENST00000469543 Q8NFD4 153 aa16.3■□□□□ 0.2
VIM-203ENST00000469543 HIST1H2AAQ96QV6 131 aa16.3■□□□□ 0.2
VIM-203ENST00000469543 SUCNR1Q9BXA5 334 aa16.3■□□□□ 0.2
VIM-203ENST00000469543 PCDHB16Q9NRJ7 776 aa16.3■□□□□ 0.2
VIM-203ENST00000469543 UBE2J1Q9Y385 318 aaPredicted RBP16.3■□□□□ 0.2
VIM-203ENST00000469543 ICE1Q9Y2F5 2266 aa16.29■□□□□ 0.2
VIM-203ENST00000469543 TRAV24A0A0B4J272 114 aa16.29■□□□□ 0.2
VIM-203ENST00000469543 FAM24AA6NFZ4 105 aa16.29■□□□□ 0.2
VIM-203ENST00000469543 TAAR5O14804 337 aa16.29■□□□□ 0.2
VIM-203ENST00000469543 NKX2-8O15522 239 aa16.29■□□□□ 0.2
VIM-203ENST00000469543 SS18L1O75177 396 aaPredicted RBP16.29■□□□□ 0.2
VIM-203ENST00000469543 WDYHV1Q96HA8 205 aa16.29■□□□□ 0.2
VIM-203ENST00000469543 TECTBQ96PL2 329 aa16.29■□□□□ 0.2
VIM-203ENST00000469543 E5RGE8 158 aa16.29■□□□□ 0.2
VIM-203ENST00000469543 JTBO76095 146 aa16.29■□□□□ 0.2
VIM-203ENST00000469543 TK1P04183 234 aa16.29■□□□□ 0.2
VIM-203ENST00000469543 AKR1C3P42330 323 aa16.29■□□□□ 0.2
VIM-203ENST00000469543 KCNJ3P48549 501 aa16.29■□□□□ 0.2
VIM-203ENST00000469543 SULT1A2P50226 295 aa16.29■□□□□ 0.2
VIM-203ENST00000469543 CAV2P51636 162 aa16.29■□□□□ 0.2
VIM-203ENST00000469543 CLINT1Q14677 625 aa16.29■□□□□ 0.2
VIM-203ENST00000469543 SVBPQ8N300 66 aa16.29■□□□□ 0.2
VIM-203ENST00000469543 ZFP62Q8NB50 900 aaPredicted RBP16.29■□□□□ 0.2
VIM-203ENST00000469543 NSG2Q9Y328 171 aa16.29■□□□□ 0.2
VIM-203ENST00000469543 ADGRG4Q8IZF6 3080 aa16.28■□□□□ 0.2
VIM-203ENST00000469543 RNASEK-C17orf49H0YIS7 233 aa16.28■□□□□ 0.2
VIM-203ENST00000469543 APLNRP35414 380 aa16.28■□□□□ 0.2
VIM-203ENST00000469543 ARR3P36575 388 aa16.28■□□□□ 0.2
VIM-203ENST00000469543 LRTM2Q8N967 370 aa16.28■□□□□ 0.2
VIM-203ENST00000469543 NRIP2Q9BQI9 281 aa16.28■□□□□ 0.2
VIM-203ENST00000469543 TMEM222Q9H0R3 208 aa16.28■□□□□ 0.2
VIM-203ENST00000469543 KLF13Q9Y2Y9 288 aaPredicted RBP16.28■□□□□ 0.2
VIM-203ENST00000469543 CADP27708 2225 aa16.28■□□□□ 0.2
VIM-203ENST00000469543 ST8SIA3O43173 380 aa16.28■□□□□ 0.2
VIM-203ENST00000469543 LYZL6O75951 148 aa16.28■□□□□ 0.2
VIM-203ENST00000469543 ZNF616Q08AN1 781 aa16.28■□□□□ 0.2
VIM-203ENST00000469543 BTNL8Q6UX41 500 aa16.28■□□□□ 0.2
VIM-203ENST00000469543 DPPA2Q7Z7J5 298 aa16.28■□□□□ 0.2
VIM-203ENST00000469543 LILRB1Q8NHL6 650 aaPredicted RBP16.28■□□□□ 0.2
VIM-203ENST00000469543 GLAP06280 429 aa16.27■□□□□ 0.2
VIM-203ENST00000469543 SFTA3P0C7M3 94 aa16.27■□□□□ 0.2
VIM-203ENST00000469543 RNPS1Q15287 305 aaKnown RBP16.27■□□□□ 0.2
VIM-203ENST00000469543 ZNF766Q5HY98 468 aa16.27■□□□□ 0.2
VIM-203ENST00000469543 FBXW9Q5XUX1 488 aa16.27■□□□□ 0.2
VIM-203ENST00000469543 WDR86Q86TI4 376 aa16.27■□□□□ 0.2
VIM-203ENST00000469543 OR5A2Q8NGI9 324 aa16.27■□□□□ 0.2
VIM-203ENST00000469543 OR1K1Q8NGR3 316 aa16.27■□□□□ 0.2
VIM-203ENST00000469543 OR2J1Q9GZK6 312 aa16.27■□□□□ 0.2
VIM-203ENST00000469543 ZNF292O60281 2723 aa16.27■□□□□ 0.19
VIM-203ENST00000469543 TRGV5A0A0B4J1U4 118 aa16.27■□□□□ 0.19
VIM-203ENST00000469543 MEX3AA1L020 520 aaKnown RBP16.27■□□□□ 0.19
VIM-203ENST00000469543 ANKRD30BLA7E2S9 258 aa16.27■□□□□ 0.19
VIM-203ENST00000469543 ADAM20O43506 726 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 116.1 ms