RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 DEGS1O15121 323 aa11.3□□□□□ -0.6
SMC1A-204ENST00000463684 GAPDHP04406 335 aaKnown RBP11.3□□□□□ -0.6
SMC1A-204ENST00000463684 OR8U8P0C7N1 319 aa11.3□□□□□ -0.6
SMC1A-204ENST00000463684 PRKACGP22612 351 aa11.3□□□□□ -0.6
SMC1A-204ENST00000463684 GLP1RP43220 463 aa11.3□□□□□ -0.6
SMC1A-204ENST00000463684 GNG10P50151 68 aa11.3□□□□□ -0.6
SMC1A-204ENST00000463684 EBI3Q14213 229 aa11.3□□□□□ -0.6
SMC1A-204ENST00000463684 TRIM25Q14258 630 aaKnown RBP11.3□□□□□ -0.6
SMC1A-204ENST00000463684 ATXN7L3Q14CW9 347 aaPredicted RBP11.3□□□□□ -0.6
SMC1A-204ENST00000463684 ADAMTSL5Q6ZMM2 481 aa11.3□□□□□ -0.6
SMC1A-204ENST00000463684 ISOC1Q96CN7 298 aa11.3□□□□□ -0.6
SMC1A-204ENST00000463684 EAF1Q96JC9 268 aaPredicted RBP11.3□□□□□ -0.6
SMC1A-204ENST00000463684 RASL11BQ9BPW5 248 aa11.3□□□□□ -0.6
SMC1A-204ENST00000463684 FAM107BQ9H098 131 aa11.3□□□□□ -0.6
SMC1A-204ENST00000463684 COMMD4Q9H0A8 199 aa11.3□□□□□ -0.6
SMC1A-204ENST00000463684 PPIL3Q9H2H8 161 aaKnown RBP11.3□□□□□ -0.6
SMC1A-204ENST00000463684 RHOFQ9HBH0 211 aa11.3□□□□□ -0.6
SMC1A-204ENST00000463684 ADGRL4Q9HBW9 690 aa11.3□□□□□ -0.6
SMC1A-204ENST00000463684 CALYQ9NYX4 217 aa11.3□□□□□ -0.6
SMC1A-204ENST00000463684 MEIKINA0A087WXM9 373 aa11.29□□□□□ -0.6
SMC1A-204ENST00000463684 IGKV1-9A0A0C4DH69 117 aa11.29□□□□□ -0.6
SMC1A-204ENST00000463684 SLC33A1O00400 549 aaPredicted RBP11.29□□□□□ -0.6
SMC1A-204ENST00000463684 PRKYO43930 277 aa11.29□□□□□ -0.6
SMC1A-204ENST00000463684 IGHG4P01861 327 aa11.29□□□□□ -0.6
SMC1A-204ENST00000463684 CGB3P0DN86 165 aa11.29□□□□□ -0.6
SMC1A-204ENST00000463684 CGB7P0DN87 165 aa11.29□□□□□ -0.6
SMC1A-204ENST00000463684 ATF1P18846 271 aa11.29□□□□□ -0.6
SMC1A-204ENST00000463684 CRISP1P54107 249 aa11.29□□□□□ -0.6
SMC1A-204ENST00000463684 LTC4SQ16873 150 aa11.29□□□□□ -0.6
SMC1A-204ENST00000463684 SLC16A12Q6ZSM3 486 aa11.29□□□□□ -0.6
SMC1A-204ENST00000463684 BCDIN3DQ7Z5W3 292 aaKnown RBP11.29□□□□□ -0.6
SMC1A-204ENST00000463684 HS3ST5Q8IZT8 346 aa11.29□□□□□ -0.6
SMC1A-204ENST00000463684 ARHGAP24Q8N264 748 aa11.29□□□□□ -0.6
SMC1A-204ENST00000463684 Q8N9W7 124 aa11.29□□□□□ -0.6
SMC1A-204ENST00000463684 OR1N2Q8NGR9 330 aa11.29□□□□□ -0.6
SMC1A-204ENST00000463684 OR2T10Q8NGZ9 312 aa11.29□□□□□ -0.6
SMC1A-204ENST00000463684 RFT1Q96AA3 541 aa11.29□□□□□ -0.6
SMC1A-204ENST00000463684 TBX5Q99593 518 aa11.29□□□□□ -0.6
SMC1A-204ENST00000463684 PRRG3Q9BZD7 231 aa11.29□□□□□ -0.6
SMC1A-204ENST00000463684 CHCHD3Q9NX63 227 aaKnown RBP11.29□□□□□ -0.6
SMC1A-204ENST00000463684 LYSTQ99698 3801 aa11.29□□□□□ -0.6
SMC1A-204ENST00000463684 IGHV3-72A0A0B4J1Y9 119 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 IGHV1-3A0A0C4DH29 117 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 IGKV1-12A0A0C4DH73 117 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 LOC107986453A0A1B0GWG9 222 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 METTL15A6NJ78 407 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 HSD17B6O14756 317 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 KDM4BO94953 1096 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 IL1AP01583 271 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 IGKV1D-12P01611 117 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 HCKP08631 526 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 UBCP0CG48 685 aaKnown RBP11.28□□□□□ -0.6
SMC1A-204ENST00000463684 ZNF20P17024 532 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 MS4A2Q01362 244 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 ZNF616Q08AN1 781 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 ZNF816Q0VGE8 651 aaPredicted RBP11.28□□□□□ -0.6
SMC1A-204ENST00000463684 HSP90B2PQ58FF3 399 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 NXNL2Q5VZ03 156 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 Q6P435 159 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 TMEM65Q6PI78 240 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 UTS2BQ765I0 119 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 RFESDQ8TAC1 157 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 SPSB1Q96BD6 273 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 FGGYQ96C11 551 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 ADAT3Q96EY9 351 aaPredicted RBP11.28□□□□□ -0.6
SMC1A-204ENST00000463684 OSBPL10Q9BXB5 764 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 BARHL1Q9BZE3 327 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 NEK6Q9HC98 313 aa11.28□□□□□ -0.6
SMC1A-204ENST00000463684 HSPB6O14558 160 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 LDLRAD4O15165 306 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 SNX3O60493 162 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 SAP30O75446 220 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 OR5H8P0DN80 308 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 GP9P14770 177 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 SPNP16150 400 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 PSMB8P28062 276 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 REG1BP48304 166 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 CFHR3Q02985 330 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 PTGES3Q15185 160 aaKnown RBP11.27□□□□□ -0.61
SMC1A-204ENST00000463684 SSX6Q7RTT6 188 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 IZUMO1Q8IYV9 350 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 SAXO1Q8IYX7 474 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 RDH10Q8IZV5 341 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 OR10A7Q8NGE5 316 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 OR51T1Q8NGJ9 327 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 OR13A1Q8NGR1 328 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 DNAJC9Q8WXX5 260 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 UBE2E2Q96LR5 201 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 OPALINQ96PE5 141 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 S1PR3Q99500 378 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 GHITMQ9H3K2 345 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 NCOR1P1Q9H4R4 102 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 LINC00574Q9H8X3 128 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 ISYNA1Q9NPH2 558 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 KIF25Q9UIL4 384 aa11.27□□□□□ -0.61
SMC1A-204ENST00000463684 A0A1W2PPE3 182 aa11.26□□□□□ -0.61
SMC1A-204ENST00000463684 B2RBV5 119 aa11.26□□□□□ -0.61
SMC1A-204ENST00000463684 OVOL1O14753 267 aa11.26□□□□□ -0.61
SMC1A-204ENST00000463684 SULT1C4O75897 302 aa11.26□□□□□ -0.61
SMC1A-204ENST00000463684 JTBO76095 146 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms