RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 TBL2Q9Y4P3 447 aaKnown RBP5.85□□□□□ -1.47
USP54-208ENST00000461520 KMT2CQ8NEZ4 4911 aaKnown RBP5.85□□□□□ -1.47
USP54-208ENST00000461520 FAM230AA0A1W2PPH8 454 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 A0A1W2PQL4 384 aaPredicted RBP5.84□□□□□ -1.47
USP54-208ENST00000461520 FAM90A10PA6NDY2 464 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 A6NIN4 97 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 METTL15A6NJ78 407 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 VGLL3A8MV65 326 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 SYT7O43581 403 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 ZNF737O75373 536 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 GATBO75879 557 aaKnown RBP5.84□□□□□ -1.47
USP54-208ENST00000461520 SULT1C4O75897 302 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 RPP14O95059 124 aaKnown RBP5.84□□□□□ -1.47
USP54-208ENST00000461520 SERPINA3P01011 423 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 FCGR1AP12314 374 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 COX7A1P24310 79 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 HTR1FP30939 366 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 RASSF2P50749 326 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 BMXP51813 675 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 FUT6P51993 359 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 DLX6P56179 175 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 MEF2CQ06413 473 aaPredicted RBP5.84□□□□□ -1.47
USP54-208ENST00000461520 TMED1Q13445 227 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 UBE2V2Q15819 145 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 SSX6Q7RTT6 188 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 CATSPERDQ86XM0 798 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 ASCC1Q8N9N2 400 aaKnown RBP5.84□□□□□ -1.47
USP54-208ENST00000461520 OR11H6Q8NGC7 330 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 OR13D1Q8NGV5 346 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 PIFOQ8TCI5 191 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 MALSU1Q96EH3 234 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 CEP19Q96LK0 163 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 CHST5Q9GZS9 411 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 SLC25A32Q9H2D1 315 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 SEBOXQ9HB31 216 aaPredicted RBP5.84□□□□□ -1.47
USP54-208ENST00000461520 SIGLEC9Q9Y336 463 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 AP4S1Q9Y587 144 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 NBEAL2Q6ZNJ1 2754 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 RYR3Q15413 4870 aa5.84□□□□□ -1.47
USP54-208ENST00000461520 ODF3BA8MYP8 253 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 CHST1O43916 411 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 OPN1MWP04001 364 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 ARG1P05089 322 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 ALPLP05186 524 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 UBCP0CG48 685 aaKnown RBP5.83□□□□□ -1.48
USP54-208ENST00000461520 ZNF728P0DKX0 622 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 OPN1MW2P0DN77 364 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 OPN1MW3P0DN78 364 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 IGHV1-8P0DP01 117 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 PIPP12273 146 aaPredicted RBP5.83□□□□□ -1.48
USP54-208ENST00000461520 PAX6P26367 422 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 ATP6V1E1P36543 226 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 DYNLT3P51808 116 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 EDDM3BP56851 147 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 BNIP1Q12981 228 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 ODF4Q2M2E3 257 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 KLHL22Q53GT1 634 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 GDPD3Q7L5L3 318 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 LHFPL4Q7Z7J7 247 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 EGFL6Q8IUX8 553 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 Q8IYB0 196 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 ENTHD1Q8IYW4 607 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 OR8H2Q8N162 312 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 BATF2Q8N1L9 274 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 KLHDC1Q8N7A1 406 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 OR8J1Q8NGP2 316 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 TRMT10AQ8TBZ6 339 aaKnown RBP5.83□□□□□ -1.48
USP54-208ENST00000461520 RPS4Y2Q8TD47 263 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 PP6455Q8WZ26 134 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 BORCS8Q96FH0 119 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 ZNF714Q96N38 554 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 TBX5Q99593 518 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 CIB1Q99828 191 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 OSBPL10Q9BXB5 764 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 GABARAPL3Q9BY60 117 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 ABCB10Q9NRK6 738 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 MTCH1Q9NZJ7 389 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 PITPNC1Q9UKF7 332 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 FOXJ3Q9UPW0 622 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 TCF19Q9Y242 345 aa5.83□□□□□ -1.48
USP54-208ENST00000461520 SIRT4Q9Y6E7 314 aaPredicted RBP5.83□□□□□ -1.48
USP54-208ENST00000461520 IGKV1-27A0A075B6S5 117 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 IGKV2D-30A0A075B6S6 120 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 hADV38S2A0JD32 116 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 A6NDX4 124 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 F8VVB4 439 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 F8VWA3 439 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 ATP5HO75947 161 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 CYB5AP00167 134 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 POLR2IP36954 125 aaKnown RBP5.82□□□□□ -1.48
USP54-208ENST00000461520 RBP2P50120 134 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 ATP1B3P54709 279 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 ISL1P61371 349 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 FAM189A2Q15884 450 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 MINOS1Q5TGZ0 78 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 TMEM244Q5VVB8 128 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 C1orf146Q5VVC0 180 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 CCBE1Q6UXH8 406 aaPredicted RBP5.82□□□□□ -1.48
USP54-208ENST00000461520 ZBTB49Q6ZSB9 765 aa5.82□□□□□ -1.48
USP54-208ENST00000461520 SLC25A26Q70HW3 274 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms