RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 SPOPO43791 374 aa1.51□□□□□ -2.17
USP40-209ENST00000452724 SH2D1AO60880 128 aa1.51□□□□□ -2.17
USP40-209ENST00000452724 POP7O75817 140 aaKnown RBP1.51□□□□□ -2.17
USP40-209ENST00000452724 GUSBP08236 651 aa1.51□□□□□ -2.17
USP40-209ENST00000452724 GIMD1P0DJR0 217 aa1.51□□□□□ -2.17
USP40-209ENST00000452724 SLC2A1P11166 492 aa1.51□□□□□ -2.17
USP40-209ENST00000452724 DNASE1L1P49184 302 aa1.51□□□□□ -2.17
USP40-209ENST00000452724 C2orf80Q0P641 193 aa1.51□□□□□ -2.17
USP40-209ENST00000452724 ELP2Q6IA86 826 aa1.51□□□□□ -2.17
USP40-209ENST00000452724 NOXRED1Q6NXP6 359 aa1.51□□□□□ -2.17
USP40-209ENST00000452724 ZNF322Q6U7Q0 402 aaPredicted RBP1.51□□□□□ -2.17
USP40-209ENST00000452724 C10orf107Q8IVU9 208 aa1.51□□□□□ -2.17
USP40-209ENST00000452724 SPICQ8N5J4 248 aa1.51□□□□□ -2.17
USP40-209ENST00000452724 FER1L6-AS1Q8NA97 138 aa1.51□□□□□ -2.17
USP40-209ENST00000452724 LMX1AQ8TE12 382 aa1.51□□□□□ -2.17
USP40-209ENST00000452724 CASTOR1Q8WTX7 329 aa1.51□□□□□ -2.17
USP40-209ENST00000452724 CIDECQ96AQ7 238 aaPredicted RBP1.51□□□□□ -2.17
USP40-209ENST00000452724 CMBLQ96DG6 245 aa1.51□□□□□ -2.17
USP40-209ENST00000452724 APOL4Q9BPW4 351 aa1.51□□□□□ -2.17
USP40-209ENST00000452724 IGKV5-2P06315 115 aa1.5□□□□□ -2.17
USP40-209ENST00000452724 PSKH1P11801 424 aa1.5□□□□□ -2.17
USP40-209ENST00000452724 GZMHP20718 246 aa1.5□□□□□ -2.17
USP40-209ENST00000452724 PLTPP55058 493 aa1.5□□□□□ -2.17
USP40-209ENST00000452724 KRTAP12-1P59990 96 aa1.5□□□□□ -2.17
USP40-209ENST00000452724 VAMP3Q15836 100 aa1.5□□□□□ -2.17
USP40-209ENST00000452724 ZCWPW2Q504Y3 356 aa1.5□□□□□ -2.17
USP40-209ENST00000452724 CAVIN4Q5BKX8 364 aa1.5□□□□□ -2.17
USP40-209ENST00000452724 LGALS14Q8TCE9 139 aa1.5□□□□□ -2.17
USP40-209ENST00000452724 REEP6Q96HR9 211 aa1.5□□□□□ -2.17
USP40-209ENST00000452724 CPB2Q96IY4 423 aa1.5□□□□□ -2.17
USP40-209ENST00000452724 PITX2Q99697 317 aa1.5□□□□□ -2.17
USP40-209ENST00000452724 SUCNR1Q9BXA5 334 aa1.5□□□□□ -2.17
USP40-209ENST00000452724 RMND1Q9NWS8 449 aa1.5□□□□□ -2.17
USP40-209ENST00000452724 ATRNO75882 1429 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 IGHV2-26A0A0B4J1V2 119 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 A0A1B0GTI1 187 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 OVOL1O14753 267 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 PDCD6O75340 191 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 CA2P00918 260 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 GYPCP04921 128 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 PSG4Q00888 419 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 BAXQ07812 192 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 CEACAM21Q3KPI0 293 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 HBMQ6B0K9 141 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 ZNF567Q8N184 647 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 PDCL2Q8N4E4 241 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 ZIC4Q8N9L1 334 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 OR4K17Q8NGC6 315 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 OR4K13Q8NH42 304 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 OR4A5Q8NH83 315 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 OR2V1Q8NHB1 315 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 ZMYND19Q96E35 227 aaPredicted RBP1.49□□□□□ -2.17
USP40-209ENST00000452724 GLT1D1Q96MS3 346 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 B9D2Q9BPU9 175 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 KRTAP4-1Q9BYQ7 146 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 ARL6Q9H0F7 186 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 MFSD1Q9H3U5 465 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 LRRC19Q9H756 370 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 TUBA4BQ9H853 241 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 SLC23A2Q9UGH3 650 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 OTOGLQ3ZCN5 2332 aa1.49□□□□□ -2.17
USP40-209ENST00000452724 MGAT4DA6NG13 374 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 hCG_2039718K7EN88 272 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 LECT2O14960 151 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 EEF1E1O43324 174 aaKnown RBP1.48□□□□□ -2.17
USP40-209ENST00000452724 CRTAPO75718 401 aaPredicted RBP1.48□□□□□ -2.17
USP40-209ENST00000452724 ZMPSTE24O75844 475 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 OR12D1P0DN82 309 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 IFI30P13284 250 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 CD99P14209 185 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 EVI2BP34910 448 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 COILP38432 576 aaPredicted RBP1.48□□□□□ -2.17
USP40-209ENST00000452724 CARD18P57730 90 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 HBG1P69891 147 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 HBG2P69892 147 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 MMDQ15546 238 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 C10orf91Q5T1B1 145 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 SCXQ7RTU7 201 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 NIT1Q86X76 327 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 SLC25A45Q8N413 288 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 GATD1Q8NB37 220 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 MFSD8Q8NHS3 518 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP1.48□□□□□ -2.17
USP40-209ENST00000452724 HIST1H2BAQ96A08 127 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 TMEM106BQ9NUM4 274 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 RPUSD1Q9UJJ7 312 aaKnown RBP1.48□□□□□ -2.17
USP40-209ENST00000452724 VPREB3Q9UKI3 123 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 POMPQ9Y244 141 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 BTRCQ9Y297 605 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 PHLDA3Q9Y5J5 127 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 URGCP-MRPS24S4R325 110 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 MYO9BQ13459 2157 aa1.48□□□□□ -2.17
USP40-209ENST00000452724 TNIKQ9UKE5 1360 aa1.47□□□□□ -2.17
USP40-209ENST00000452724 TRGV4A0A0C4DH28 118 aa1.47□□□□□ -2.17
USP40-209ENST00000452724 KLRC4-KLRK1H3BQV0 150 aa1.47□□□□□ -2.17
USP40-209ENST00000452724 I3L4J1 428 aa1.47□□□□□ -2.17
USP40-209ENST00000452724 TP53I11O14683 189 aa1.47□□□□□ -2.17
USP40-209ENST00000452724 IGKV1-16P04430 117 aa1.47□□□□□ -2.17
USP40-209ENST00000452724 PRDX1Q06830 199 aaKnown RBP1.47□□□□□ -2.17
USP40-209ENST00000452724 NIPAL1Q6NVV3 410 aa1.47□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms