RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 GCSHP23434 173 aa11.77□□□□□ -0.52
USP40-208ENST00000450966 SLC25A26Q70HW3 274 aa11.77□□□□□ -0.52
USP40-208ENST00000450966 TMEM167BQ9NRX6 74 aa11.77□□□□□ -0.52
USP40-208ENST00000450966 SLC22A13Q9Y226 551 aa11.77□□□□□ -0.52
USP40-208ENST00000450966 TRAV30A0A087WSZ9 112 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 C3orf85A0A1B0GTC6 90 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 LMX1BO60663 402 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 COX5BP10606 129 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 CD1CP29017 333 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 CAMKMTQ7Z624 323 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 C17orf47Q8NEP4 570 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 OR2V2Q96R30 315 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 ELOVL5Q9NYP7 299 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 GABRG2P18507 467 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 LCN2P80188 198 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 LHFPL2Q6ZUX7 228 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 OR51E1Q8TCB6 317 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 TAAR6Q96RI8 345 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 TXNDC17Q9BRA2 123 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 COA3Q9Y2R0 106 aaPredicted RBP11.77□□□□□ -0.53
USP40-208ENST00000450966 LOC107984156A0A0G2JMH3 177 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 A0A1B0GWB2 263 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 ZNF732B4DXR9 585 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 TMPRSS11DO60235 418 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 GJB3O75712 270 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 RAC1P63000 192 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 SLC48A1Q6P1K1 146 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 ARL17AQ8IVW1 177 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 BAHD1Q8TBE0 780 aaPredicted RBP11.77□□□□□ -0.53
USP40-208ENST00000450966 SP7Q8TDD2 431 aaPredicted RBP11.77□□□□□ -0.53
USP40-208ENST00000450966 H1FXQ92522 213 aaKnown RBP11.77□□□□□ -0.53
USP40-208ENST00000450966 TMEM204Q9BSN7 226 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 MRPS18AQ9NVS2 196 aaKnown RBP11.77□□□□□ -0.53
USP40-208ENST00000450966 CISD1Q9NZ45 108 aaKnown RBP11.77□□□□□ -0.53
USP40-208ENST00000450966 CYSLTR1Q9Y271 337 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 ARAP2Q8WZ64 1704 aa11.77□□□□□ -0.53
USP40-208ENST00000450966 HSPB6O14558 160 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 ZFPL1O95159 310 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 TMEM211Q6ICI0 200 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 OR4D9Q8NGE8 314 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 OR52N5Q8NH56 324 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 SLC7A10Q9NS82 523 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 FAM53BQ14153 422 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 TGIF1Q15583 401 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 OR51B2Q9Y5P1 312 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 A0A1B0GW15 77 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 TMEM262E9PQX1 116 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 OR2J3O76001 311 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 AGAP20933 346 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 CD226Q15762 336 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 ABHD17CQ6PCB6 329 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 TMEM116Q8NCL8 245 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 OR10G3Q8NGC4 313 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 TMEM186Q96B77 213 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 C5orf30Q96GV9 206 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 TRAV17A0A0B4J275 112 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 LEPROTL1O95214 131 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 HBZP02008 142 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 GUSBP08236 651 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 APOBEC1P41238 236 aaKnown RBP11.76□□□□□ -0.53
USP40-208ENST00000450966 TDGF1P3P51864 188 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 SERF2P84101 59 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 FUT7Q11130 342 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 GJC3Q8NFK1 279 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 OR13C6PQ8NH95 151 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 SLCO1C1Q9NYB5 712 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 SLC17A4Q9Y2C5 497 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 ADAMTS7Q9UKP4 1686 aa11.76□□□□□ -0.53
USP40-208ENST00000450966 SPINT2O43291 252 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 CD8AP01732 235 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 IGHV2-70P01814 119 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 DANCRP0C864 163 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 ARR3P36575 388 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 C1orf194Q5T5A4 169 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 RARRES2Q99969 163 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 GCM2O75603 506 aaPredicted RBP11.75□□□□□ -0.53
USP40-208ENST00000450966 SPEM2Q0P670 501 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 ZNF774Q6NX45 483 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 FDX2Q6P4F2 183 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 TMEM91Q6ZNR0 172 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 LIAT1Q6ZQX7 453 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 HIST3H2BBQ8N257 126 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 PAGE4O60829 102 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 FAHP16930 419 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 OR4S2Q8NH73 311 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 GUCD1Q96NT3 240 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 SCN4AP35499 1836 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 H2BFSP57053 126 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 HES3Q5TGS1 186 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 OR8A1Q8NGG7 326 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 WNT5BQ9H1J7 359 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 NPTNQ9Y639 398 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 COLCA2A8K830 154 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 RER1O15258 196 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 TSPAN13O95857 204 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 CSN3P07498 182 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 ADH4P08319 380 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 RND3P61587 244 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 ARIH2OSQ8N7S6 290 aa11.75□□□□□ -0.53
USP40-208ENST00000450966 OR8G5Q8NG78 346 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms