RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 ATP6V1G2O95670 118 aa12.33□□□□□ -0.44
LIMS3-201ENST00000437679 KCNJ3P48549 501 aa12.33□□□□□ -0.44
LIMS3-201ENST00000437679 RBM11P57052 281 aaKnown RBP12.33□□□□□ -0.44
LIMS3-201ENST00000437679 RELBQ01201 579 aa12.33□□□□□ -0.44
LIMS3-201ENST00000437679 IRF3Q14653 427 aa12.33□□□□□ -0.44
LIMS3-201ENST00000437679 SLC22A6Q4U2R8 563 aa12.33□□□□□ -0.44
LIMS3-201ENST00000437679 NHLRC3Q5JS37 347 aa12.33□□□□□ -0.44
LIMS3-201ENST00000437679 OR52W1Q6IF63 320 aa12.33□□□□□ -0.44
LIMS3-201ENST00000437679 LHFPL4Q7Z7J7 247 aa12.33□□□□□ -0.44
LIMS3-201ENST00000437679 LINC00596Q86U02 117 aa12.33□□□□□ -0.44
LIMS3-201ENST00000437679 NKAIN3Q8N8D7 197 aa12.33□□□□□ -0.44
LIMS3-201ENST00000437679 SGCDQ92629 289 aa12.33□□□□□ -0.44
LIMS3-201ENST00000437679 MUL1Q969V5 352 aa12.33□□□□□ -0.44
LIMS3-201ENST00000437679 MALSU1Q96EH3 234 aa12.33□□□□□ -0.44
LIMS3-201ENST00000437679 CNBD2Q96M20 576 aa12.33□□□□□ -0.44
LIMS3-201ENST00000437679 TMED9Q9BVK6 235 aa12.33□□□□□ -0.44
LIMS3-201ENST00000437679 CLEC7AQ9BXN2 247 aa12.33□□□□□ -0.44
LIMS3-201ENST00000437679 BARHL1Q9BZE3 327 aa12.33□□□□□ -0.44
LIMS3-201ENST00000437679 CCDC90BQ9GZT6 254 aa12.33□□□□□ -0.44
LIMS3-201ENST00000437679 MRPS28Q9Y2Q9 187 aaKnown RBP12.33□□□□□ -0.44
LIMS3-201ENST00000437679 LSM2Q9Y333 95 aaKnown RBP12.33□□□□□ -0.44
LIMS3-201ENST00000437679 IGHV2-26A0A0B4J1V2 119 aa12.32□□□□□ -0.44
LIMS3-201ENST00000437679 CLPSL1A2RUU4 121 aa12.32□□□□□ -0.44
LIMS3-201ENST00000437679 MEGF11A6BM72 1044 aa12.32□□□□□ -0.44
LIMS3-201ENST00000437679 ZNF729A6NN14 1252 aaPredicted RBP12.32□□□□□ -0.44
LIMS3-201ENST00000437679 PIN1P1O15428 100 aa12.32□□□□□ -0.44
LIMS3-201ENST00000437679 OR7C1O76099 320 aaPredicted RBP12.32□□□□□ -0.44
LIMS3-201ENST00000437679 GTF2F2P13984 249 aa12.32□□□□□ -0.44
LIMS3-201ENST00000437679 CDK2P24941 298 aa12.32□□□□□ -0.44
LIMS3-201ENST00000437679 PAX6P26367 422 aa12.32□□□□□ -0.44
LIMS3-201ENST00000437679 GPR50Q13585 617 aa12.32□□□□□ -0.44
LIMS3-201ENST00000437679 LY6EQ16553 131 aa12.32□□□□□ -0.44
LIMS3-201ENST00000437679 ACSM3Q53FZ2 586 aa12.32□□□□□ -0.44
LIMS3-201ENST00000437679 PRAMEF5Q5TYX0 476 aa12.32□□□□□ -0.44
LIMS3-201ENST00000437679 OLFML2AQ68BL7 652 aa12.32□□□□□ -0.44
LIMS3-201ENST00000437679 AWAT2Q6E213 333 aa12.32□□□□□ -0.44
LIMS3-201ENST00000437679 HEPN1Q6WQI6 88 aa12.32□□□□□ -0.44
LIMS3-201ENST00000437679 ZNF565Q8N9K5 539 aa12.32□□□□□ -0.44
LIMS3-201ENST00000437679 OR4D6Q8NGJ1 314 aa12.32□□□□□ -0.44
LIMS3-201ENST00000437679 UFD1Q92890 307 aa12.32□□□□□ -0.44
LIMS3-201ENST00000437679 DPCDQ9BVM2 203 aaPredicted RBP12.32□□□□□ -0.44
LIMS3-201ENST00000437679 SLITRK2Q9H156 845 aa12.32□□□□□ -0.44
LIMS3-201ENST00000437679 PPIL3Q9H2H8 161 aaKnown RBP12.32□□□□□ -0.44
LIMS3-201ENST00000437679 NCOR1P1Q9H4R4 102 aa12.32□□□□□ -0.44
LIMS3-201ENST00000437679 TCF7L1Q9HCS4 588 aa12.32□□□□□ -0.44
LIMS3-201ENST00000437679 RAB26Q9ULW5 256 aa12.32□□□□□ -0.44
LIMS3-201ENST00000437679 MEIKINA0A087WXM9 373 aa12.31□□□□□ -0.44
LIMS3-201ENST00000437679 GEMIN2O14893 280 aaKnown RBP12.31□□□□□ -0.44
LIMS3-201ENST00000437679 MMP23AO75900 390 aa12.31□□□□□ -0.44
LIMS3-201ENST00000437679 CRHBPP24387 322 aa12.31□□□□□ -0.44
LIMS3-201ENST00000437679 VHLP40337 213 aa12.31□□□□□ -0.44
LIMS3-201ENST00000437679 FAM189A2Q15884 450 aa12.31□□□□□ -0.44
LIMS3-201ENST00000437679 SSX2Q16385 188 aa12.31□□□□□ -0.44
LIMS3-201ENST00000437679 MPV17LQ2QL34 196 aa12.31□□□□□ -0.44
LIMS3-201ENST00000437679 MINOS1Q5TGZ0 78 aa12.31□□□□□ -0.44
LIMS3-201ENST00000437679 GLIPR1L1Q6UWM5 242 aa12.31□□□□□ -0.44
LIMS3-201ENST00000437679 UNQ9370/PRO34162Q6UXP9 181 aa12.31□□□□□ -0.44
LIMS3-201ENST00000437679 PRSS48Q7RTY5 328 aa12.31□□□□□ -0.44
LIMS3-201ENST00000437679 RTN4RL2Q86UN3 420 aa12.31□□□□□ -0.44
LIMS3-201ENST00000437679 ABHD12Q8N2K0 398 aa12.31□□□□□ -0.44
LIMS3-201ENST00000437679 SUMF2Q8NBJ7 301 aa12.31□□□□□ -0.44
LIMS3-201ENST00000437679 SGMS2Q8NHU3 365 aa12.31□□□□□ -0.44
LIMS3-201ENST00000437679 NDNFQ8TB73 568 aa12.31□□□□□ -0.44
LIMS3-201ENST00000437679 IFT22Q9H7X7 185 aa12.31□□□□□ -0.44
LIMS3-201ENST00000437679 RAB18Q9NP72 206 aa12.31□□□□□ -0.44
LIMS3-201ENST00000437679 ABCB10Q9NRK6 738 aa12.31□□□□□ -0.44
LIMS3-201ENST00000437679 KIF25Q9UIL4 384 aa12.31□□□□□ -0.44
LIMS3-201ENST00000437679 BLOC1S6Q9UL45 172 aa12.31□□□□□ -0.44
LIMS3-201ENST00000437679 MINOS1-NBL1R4GNA1 71 aa12.31□□□□□ -0.44
LIMS3-201ENST00000437679 A0A1W2PP11 408 aa12.3□□□□□ -0.44
LIMS3-201ENST00000437679 HSMCR30P0CW71 290 aa12.3□□□□□ -0.44
LIMS3-201ENST00000437679 GLP1RP43220 463 aa12.3□□□□□ -0.44
LIMS3-201ENST00000437679 PAX5Q02548 391 aa12.3□□□□□ -0.44
LIMS3-201ENST00000437679 PLA1AQ53H76 456 aa12.3□□□□□ -0.44
LIMS3-201ENST00000437679 RBM48Q5RL73 367 aaKnown RBP12.3□□□□□ -0.44
LIMS3-201ENST00000437679 ATAD3CQ5T2N8 411 aa12.3□□□□□ -0.44
LIMS3-201ENST00000437679 RSBN1Q5VWQ0 802 aaPredicted RBP12.3□□□□□ -0.44
LIMS3-201ENST00000437679 LIPKQ5VXJ0 399 aa12.3□□□□□ -0.44
LIMS3-201ENST00000437679 Q6ZSV7 163 aa12.3□□□□□ -0.44
LIMS3-201ENST00000437679 MRPS24Q96EL2 167 aaKnown RBP12.3□□□□□ -0.44
LIMS3-201ENST00000437679 UQCC2Q9BRT2 126 aa12.3□□□□□ -0.44
LIMS3-201ENST00000437679 RNF114Q9Y508 228 aa12.3□□□□□ -0.44
LIMS3-201ENST00000437679 KBTBD11-OT1A0A1B0GTJ5 212 aa12.29□□□□□ -0.44
LIMS3-201ENST00000437679 VGLL3A8MV65 326 aa12.29□□□□□ -0.44
LIMS3-201ENST00000437679 HTR1DP28221 377 aa12.29□□□□□ -0.44
LIMS3-201ENST00000437679 INSL4Q14641 139 aa12.29□□□□□ -0.44
LIMS3-201ENST00000437679 C17orf58Q2M2W7 97 aa12.29□□□□□ -0.44
LIMS3-201ENST00000437679 HSD17B12Q53GQ0 312 aa12.29□□□□□ -0.44
LIMS3-201ENST00000437679 LDLRAD2Q5SZI1 272 aa12.29□□□□□ -0.44
LIMS3-201ENST00000437679 BAIAP2L2Q6UXY1 529 aa12.29□□□□□ -0.44
LIMS3-201ENST00000437679 LIAT1Q6ZQX7 453 aa12.29□□□□□ -0.44
LIMS3-201ENST00000437679 CEACAM19Q7Z692 300 aa12.29□□□□□ -0.44
LIMS3-201ENST00000437679 DYNAPQ8N1N2 210 aa12.29□□□□□ -0.44
LIMS3-201ENST00000437679 OR13A1Q8NGR1 328 aa12.29□□□□□ -0.44
LIMS3-201ENST00000437679 LINC01006Q8NI28 216 aa12.29□□□□□ -0.44
LIMS3-201ENST00000437679 PLPPR1Q8TBJ4 325 aa12.29□□□□□ -0.44
LIMS3-201ENST00000437679 ZNF596Q8TC21 504 aa12.29□□□□□ -0.44
LIMS3-201ENST00000437679 NEK7Q8TDX7 302 aa12.29□□□□□ -0.44
LIMS3-201ENST00000437679 WFDC12Q8WWY7 111 aa12.29□□□□□ -0.44
LIMS3-201ENST00000437679 PHYHIPQ92561 330 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms