RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 GBX2P52951 348 aaPredicted RBP13.63□□□□□ -0.23
TRIM39-209ENST00000428728 PRRX1P54821 245 aa13.63□□□□□ -0.23
TRIM39-209ENST00000428728 CD83Q01151 205 aa13.63□□□□□ -0.23
TRIM39-209ENST00000428728 LTC4SQ16873 150 aa13.63□□□□□ -0.23
TRIM39-209ENST00000428728 SATL1Q86VE3 508 aa13.63□□□□□ -0.23
TRIM39-209ENST00000428728 OR51T1Q8NGJ9 327 aa13.63□□□□□ -0.23
TRIM39-209ENST00000428728 OR13A1Q8NGR1 328 aa13.63□□□□□ -0.23
TRIM39-209ENST00000428728 OR10K1Q8NGX5 313 aa13.63□□□□□ -0.23
TRIM39-209ENST00000428728 TNFAIP8L1Q8WVP5 186 aa13.63□□□□□ -0.23
TRIM39-209ENST00000428728 LEAP2Q969E1 77 aa13.63□□□□□ -0.23
TRIM39-209ENST00000428728 TOMM40LQ969M1 308 aa13.63□□□□□ -0.23
TRIM39-209ENST00000428728 CREB3L1Q96BA8 519 aa13.63□□□□□ -0.23
TRIM39-209ENST00000428728 KIRREL1Q96J84 757 aa13.63□□□□□ -0.23
TRIM39-209ENST00000428728 Q96MT0 163 aa13.63□□□□□ -0.23
TRIM39-209ENST00000428728 RBM14Q96PK6 669 aaKnown RBP13.63□□□□□ -0.23
TRIM39-209ENST00000428728 ZNF649Q9BS31 505 aa13.63□□□□□ -0.23
TRIM39-209ENST00000428728 C9orf16Q9BUW7 83 aa13.63□□□□□ -0.23
TRIM39-209ENST00000428728 INPP5EQ9NRR6 644 aa13.63□□□□□ -0.23
TRIM39-209ENST00000428728 AURKAIP1Q9NWT8 199 aaPredicted RBP13.63□□□□□ -0.23
TRIM39-209ENST00000428728 MEIKINA0A087WXM9 373 aa13.62□□□□□ -0.23
TRIM39-209ENST00000428728 TCRBV4S1A1TA0A5B7 111 aa13.62□□□□□ -0.23
TRIM39-209ENST00000428728 MPZL2O60487 215 aa13.62□□□□□ -0.23
TRIM39-209ENST00000428728 ALX3O95076 343 aa13.62□□□□□ -0.23
TRIM39-209ENST00000428728 PF4P02776 101 aa13.62□□□□□ -0.23
TRIM39-209ENST00000428728 RAB3AP20336 220 aa13.62□□□□□ -0.23
TRIM39-209ENST00000428728 MNDAP41218 407 aa13.62□□□□□ -0.23
TRIM39-209ENST00000428728 GTF2A1P52655 376 aaPredicted RBP13.62□□□□□ -0.23
TRIM39-209ENST00000428728 RAB40BQ12829 278 aa13.62□□□□□ -0.23
TRIM39-209ENST00000428728 MRPL28Q13084 256 aaKnown RBP13.62□□□□□ -0.23
TRIM39-209ENST00000428728 PIGYQ3MUY2 71 aa13.62□□□□□ -0.23
TRIM39-209ENST00000428728 TCTEX1D4Q5JR98 221 aa13.62□□□□□ -0.23
TRIM39-209ENST00000428728 CCDC144NLQ6NUI1 221 aa13.62□□□□□ -0.23
TRIM39-209ENST00000428728 C10orf99Q6UWK7 81 aa13.62□□□□□ -0.23
TRIM39-209ENST00000428728 OR4X2Q8NGF9 303 aa13.62□□□□□ -0.23
TRIM39-209ENST00000428728 RHOXF1Q8NHV9 184 aa13.62□□□□□ -0.23
TRIM39-209ENST00000428728 RGP1Q92546 391 aaPredicted RBP13.62□□□□□ -0.23
TRIM39-209ENST00000428728 RPEQ96AT9 228 aa13.62□□□□□ -0.23
TRIM39-209ENST00000428728 CPNE2Q96FN4 548 aaPredicted RBP13.62□□□□□ -0.23
TRIM39-209ENST00000428728 SLC29A1Q99808 456 aa13.62□□□□□ -0.23
TRIM39-209ENST00000428728 NECAP2Q9NVZ3 263 aa13.62□□□□□ -0.23
TRIM39-209ENST00000428728 TAS2R4Q9NYW5 299 aa13.62□□□□□ -0.23
TRIM39-209ENST00000428728 CALYQ9NYX4 217 aa13.62□□□□□ -0.23
TRIM39-209ENST00000428728 A0A087X0M5 115 aa13.61□□□□□ -0.23
TRIM39-209ENST00000428728 TRAV24A0A0B4J272 114 aa13.61□□□□□ -0.23
TRIM39-209ENST00000428728 KBTBD11-OT1A0A1B0GTJ5 212 aa13.61□□□□□ -0.23
TRIM39-209ENST00000428728 LOC100130705A0A1B0GUX0 176 aa13.61□□□□□ -0.23
TRIM39-209ENST00000428728 A0A1B0GX30 115 aa13.61□□□□□ -0.23
TRIM39-209ENST00000428728 LY6LH3BQJ8 138 aa13.61□□□□□ -0.23
TRIM39-209ENST00000428728 MAGEB3O15480 346 aa13.61□□□□□ -0.23
TRIM39-209ENST00000428728 AMY1AP04745 511 aa13.61□□□□□ -0.23
TRIM39-209ENST00000428728 AMY2AP04746 511 aa13.61□□□□□ -0.23
TRIM39-209ENST00000428728 RPSAP08865 295 aaKnown RBP13.61□□□□□ -0.23
TRIM39-209ENST00000428728 IGLL1P15814 213 aa13.61□□□□□ -0.23
TRIM39-209ENST00000428728 GNG10P50151 68 aa13.61□□□□□ -0.23
TRIM39-209ENST00000428728 RSU1Q15404 277 aa13.61□□□□□ -0.23
TRIM39-209ENST00000428728 ELP2Q6IA86 826 aa13.61□□□□□ -0.23
TRIM39-209ENST00000428728 PXT1Q8NFP0 134 aa13.61□□□□□ -0.23
TRIM39-209ENST00000428728 OR9G1Q8NH87 305 aa13.61□□□□□ -0.23
TRIM39-209ENST00000428728 CNIH3Q8TBE1 160 aa13.61□□□□□ -0.23
TRIM39-209ENST00000428728 MRGPRDQ8TDS7 321 aa13.61□□□□□ -0.23
TRIM39-209ENST00000428728 APH1BQ8WW43 257 aa13.61□□□□□ -0.23
TRIM39-209ENST00000428728 MYDGFQ969H8 173 aa13.61□□□□□ -0.23
TRIM39-209ENST00000428728 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.61□□□□□ -0.23
TRIM39-209ENST00000428728 AMMECR1Q9Y4X0 333 aaPredicted RBP13.61□□□□□ -0.23
TRIM39-209ENST00000428728 TSSC4Q9Y5U2 329 aaPredicted RBP13.61□□□□□ -0.23
TRIM39-209ENST00000428728 HTR3BO95264 441 aa13.6□□□□□ -0.23
TRIM39-209ENST00000428728 IL1AP01583 271 aa13.6□□□□□ -0.23
TRIM39-209ENST00000428728 IL13RA2Q14627 380 aa13.6□□□□□ -0.23
TRIM39-209ENST00000428728 FOXB2Q5VYV0 432 aa13.6□□□□□ -0.23
TRIM39-209ENST00000428728 XAF1Q6GPH4 301 aa13.6□□□□□ -0.23
TRIM39-209ENST00000428728 OR56B4Q8NH76 319 aa13.6□□□□□ -0.23
TRIM39-209ENST00000428728 PLPPR1Q8TBJ4 325 aa13.6□□□□□ -0.23
TRIM39-209ENST00000428728 JAM3Q9BX67 310 aa13.6□□□□□ -0.23
TRIM39-209ENST00000428728 FAM118AQ9NWS6 357 aa13.6□□□□□ -0.23
TRIM39-209ENST00000428728 IDI2-AS1Q9NZ38 188 aa13.6□□□□□ -0.23
TRIM39-209ENST00000428728 ZNF581Q9P0T4 197 aa13.6□□□□□ -0.23
TRIM39-209ENST00000428728 MOB4Q9Y3A3 225 aa13.6□□□□□ -0.23
TRIM39-209ENST00000428728 RPL36Q9Y3U8 105 aaKnown RBP13.6□□□□□ -0.23
TRIM39-209ENST00000428728 HSPE1-MOB4S4R3N1 261 aa13.6□□□□□ -0.23
TRIM39-209ENST00000428728 TRAV39A0A0B4J263 110 aa13.59□□□□□ -0.23
TRIM39-209ENST00000428728 OOSP1A8MZH6 123 aa13.59□□□□□ -0.23
TRIM39-209ENST00000428728 J3QR06 171 aa13.59□□□□□ -0.23
TRIM39-209ENST00000428728 CD2P06729 351 aa13.59□□□□□ -0.23
TRIM39-209ENST00000428728 SNRNP70P08621 437 aaKnown RBP13.59□□□□□ -0.23
TRIM39-209ENST00000428728 LIMS3P0CW19 117 aa13.59□□□□□ -0.23
TRIM39-209ENST00000428728 LIMS4P0CW20 117 aa13.59□□□□□ -0.23
TRIM39-209ENST00000428728 CGB3P0DN86 165 aa13.59□□□□□ -0.23
TRIM39-209ENST00000428728 CGB7P0DN87 165 aa13.59□□□□□ -0.23
TRIM39-209ENST00000428728 SSTR5P35346 364 aa13.59□□□□□ -0.23
TRIM39-209ENST00000428728 LOXL3P58215 753 aa13.59□□□□□ -0.23
TRIM39-209ENST00000428728 HES1Q14469 280 aa13.59□□□□□ -0.23
TRIM39-209ENST00000428728 SMN1Q16637 294 aaKnown RBP13.59□□□□□ -0.23
TRIM39-209ENST00000428728 RSBN1Q5VWQ0 802 aaPredicted RBP13.59□□□□□ -0.23
TRIM39-209ENST00000428728 ZNF529Q6P280 563 aa13.59□□□□□ -0.23
TRIM39-209ENST00000428728 PQLC1Q8N2U9 271 aa13.59□□□□□ -0.23
TRIM39-209ENST00000428728 ZNF565Q8N9K5 539 aa13.59□□□□□ -0.23
TRIM39-209ENST00000428728 RFESDQ8TAC1 157 aa13.59□□□□□ -0.23
TRIM39-209ENST00000428728 BARHL1Q9BZE3 327 aa13.59□□□□□ -0.23
TRIM39-209ENST00000428728 PCDHB16Q9NRJ7 776 aa13.59□□□□□ -0.23
TRIM39-209ENST00000428728 A0A1W2PPI3 338 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms