RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 IFITM5A6NNB3 132 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 PRRG2O14669 202 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 MRPL33O75394 65 aaKnown RBP8.59□□□□□ -1.03
USP54-205ENST00000424265 C1QCP02747 245 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 ZNF17P17021 662 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 MAS1LP35410 378 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 FABP6P51161 128 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 LCN6P62502 163 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 SRYQ05066 204 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 MPV17LQ2QL34 196 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 FHL5Q5TD97 284 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 C9orf40Q8IXQ3 194 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 ABHD5Q8WTS1 349 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 ZNF107Q9UII5 783 aaPredicted RBP8.59□□□□□ -1.03
USP54-205ENST00000424265 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 IGHV2-70DA0A0C4DH43 119 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 C4orf51C9J302 202 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 DNASE1L1P49184 302 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 CNN1P51911 297 aaKnown RBP8.59□□□□□ -1.03
USP54-205ENST00000424265 HMGA2P52926 109 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 RPS18P62269 152 aaKnown RBP8.59□□□□□ -1.03
USP54-205ENST00000424265 RPL24P83731 157 aaKnown RBP8.59□□□□□ -1.03
USP54-205ENST00000424265 PMPCAQ10713 525 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 RPL22L1Q6P5R6 122 aaKnown RBP8.59□□□□□ -1.03
USP54-205ENST00000424265 MEX3DQ86XN8 651 aaKnown RBP8.59□□□□□ -1.03
USP54-205ENST00000424265 FAM58AQ8N1B3 248 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 OR4D5Q8NGN0 318 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 TSEN15Q8WW01 171 aaKnown RBP8.59□□□□□ -1.03
USP54-205ENST00000424265 NMES1Q9C002 83 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 CTDSP1Q9GZU7 261 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 TDRD6O60522 2096 aaKnown RBP8.59□□□□□ -1.03
USP54-205ENST00000424265 HSD17B6O14756 317 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 IFNA1P01562 189 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 IGHA1P01876 353 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 FAM157CP0CG43 387 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 COX6A1P12074 109 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 PTPRZ1P23471 2315 aaPredicted RBP8.59□□□□□ -1.03
USP54-205ENST00000424265 PNRC1Q12796 327 aaPredicted RBP8.59□□□□□ -1.03
USP54-205ENST00000424265 PCOLCEQ15113 449 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 ERASQ7Z444 233 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 ASB5Q8WWX0 329 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 PPIAL4AQ9Y536 164 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 KCNE3Q9Y6H6 103 aa8.59□□□□□ -1.03
USP54-205ENST00000424265 LOC102725191A0A1B0GVB3 256 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 GAGE10A6NGK3 116 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 SOCS6O14544 535 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 CDIPTO14735 213 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 MAS1P04201 325 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 GRPRP30550 384 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 ERVS71-1P61550 626 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 P2RY6Q15077 328 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 SLC25A30Q5SVS4 291 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 MDGA2Q7Z553 956 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 H1FOOQ8IZA3 346 aaPredicted RBP8.58□□□□□ -1.04
USP54-205ENST00000424265 OR4K13Q8NH42 304 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 NOX4Q9NPH5 578 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 TRAV26-1A0A087WT03 109 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 A0A087WUU8 490 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 H0YL77 283 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 IGKV3-11P04433 115 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 KLK2P20151 261 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 SOX2P48431 317 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 ZNF880Q6PDB4 577 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 RPTNQ6XPR3 784 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 MEPCEQ7L2J0 689 aaKnown RBP8.58□□□□□ -1.04
USP54-205ENST00000424265 PIP4P1Q86T03 277 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 VASH2Q86V25 355 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 BHLHE23Q8NDY6 225 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 OR2M7Q8NG81 312 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 OR10G3Q8NGC4 313 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 OR4N2Q8NGD1 307 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 OR1N2Q8NGR9 330 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 TMEM255BQ8WV15 326 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 ZDHHC11Q9H8X9 412 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 NGBQ9NPG2 151 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 AK3Q9UIJ7 227 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 NTNG1Q9Y2I2 539 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 CACNA1IQ9P0X4 2223 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 UNC13CQ8NB66 2214 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 PROB1E7EW31 1015 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 M0R1X1 148 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 GDF9O60383 454 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 HBE1P02100 147 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 H2BFMP0C1H6 154 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 ESDP10768 282 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 FAM3BP58499 235 aaPredicted RBP8.58□□□□□ -1.04
USP54-205ENST00000424265 POU3F1Q03052 451 aaPredicted RBP8.58□□□□□ -1.04
USP54-205ENST00000424265 ZNF117Q03924 483 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 LY6G6FQ5SQ64 297 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 AAED1Q7RTV5 226 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 NR2C2APQ86WQ0 139 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 ZNF676Q8N7Q3 588 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 BMPERQ8N8U9 685 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 NKD1Q969G9 470 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 SFRP2Q96HF1 295 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 OXGR1Q96P68 337 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 SRD5A3Q9H8P0 318 aa8.58□□□□□ -1.04
USP54-205ENST00000424265 MRPS18AQ9NVS2 196 aaKnown RBP8.58□□□□□ -1.04
USP54-205ENST00000424265 RBMXP38159 391 aaKnown RBP8.58□□□□□ -1.04
USP54-205ENST00000424265 GALR1P47211 349 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms