RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 MRPL24Q96A35 216 aaKnown RBP3.01□□□□□ -1.93
SYNE1-212ENST00000423061 TMEM45BQ96B21 275 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 MSI2Q96DH6 328 aaKnown RBP3.01□□□□□ -1.93
SYNE1-212ENST00000423061 FLT3LGP49771 235 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 KIAA0040Q15053 153 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 TMEM255BQ8WV15 326 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 RNF208Q9H0X6 261 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 SRD5A3Q9H8P0 318 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 KLHDC2Q9Y2U9 406 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 DMKNQ6E0U4 476 aaPredicted RBP3.01□□□□□ -1.93
SYNE1-212ENST00000423061 C11orf40Q8WZ69 217 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 NEURL3Q96EH8 262 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 WDR54Q9H977 334 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 YAE1D1Q9NRH1 226 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 PLA2G2EQ9NZK7 142 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 INSL6Q9Y581 213 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 FAM87AP0C7U9 286 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 MRPL21Q7Z2W9 205 aaKnown RBP3.01□□□□□ -1.93
SYNE1-212ENST00000423061 RFLNBQ8N5W9 214 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 IGHV2OR16-5A0A0B4J2B6 119 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 C1orf226A1L170 272 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 CTDSPLO15194 276 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 GATA2P23769 480 aaPredicted RBP3.01□□□□□ -1.93
SYNE1-212ENST00000423061 SNU13P55769 128 aaKnown RBP3.01□□□□□ -1.93
SYNE1-212ENST00000423061 SLC25A30Q5SVS4 291 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 ZNF442Q9H7R0 627 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 CACNA1IQ9P0X4 2223 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 A0A087WWC5 75 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 SIRPB1O00241 398 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 DEFB134Q4QY38 66 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 MPV17L2Q567V2 206 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 RNF133Q8WVZ7 376 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 OR51B2Q9Y5P1 312 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 EDN1P05305 212 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 TTC32Q5I0X7 151 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 PLEKHF2Q9H8W4 249 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 COA3Q9Y2R0 106 aaPredicted RBP3.01□□□□□ -1.93
SYNE1-212ENST00000423061 FEZF1A0PJY2 475 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 BHLHA15Q7RTS1 189 aaPredicted RBP3.01□□□□□ -1.93
SYNE1-212ENST00000423061 OR4A5Q8NH83 315 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 PGLYRP3Q96LB9 341 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 OR4N5Q8IXE1 308 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 RNF183Q96D59 192 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 A0A087WV48 116 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 F5H5K5 113 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 H1FOOQ8IZA3 346 aaPredicted RBP3.01□□□□□ -1.93
SYNE1-212ENST00000423061 CABIN1Q9Y6J0 2220 aa3.01□□□□□ -1.93
SYNE1-212ENST00000423061 FAHP16930 419 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 SLC25A34Q6PIV7 304 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 ZNF695Q8IW36 515 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 OPRM1P35372 400 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 GPM6BQ13491 265 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 BPIFA4PQ86YQ2 179 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 C3orf56Q8N813 242 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 LHX4Q969G2 390 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 CHRNA10Q9GZZ6 450 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 CDC42EP3Q9UKI2 254 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 TRAV8-7A0A075B6U6 113 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 TRBV7-9A0A0J9YWB2 115 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 ACSF3Q4G176 576 aaPredicted RBP3□□□□□ -1.93
SYNE1-212ENST00000423061 EDAQ92838 391 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 MYEOVQ96EZ4 313 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 MS4A8Q9BY19 250 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 GCM1Q9NP62 436 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 MAP1LC3B2A6NCE7 125 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 NPIPB15A6NHN6 443 aaPredicted RBP3□□□□□ -1.93
SYNE1-212ENST00000423061 LRRC37AA6NMS7 1700 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 PHF1O43189 567 aaPredicted RBP3□□□□□ -1.93
SYNE1-212ENST00000423061 ZNF93P35789 620 aaPredicted RBP3□□□□□ -1.93
SYNE1-212ENST00000423061 MAP1LC3BQ9GZQ8 125 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 OR52D1Q9H346 318 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 RAB9BQ9NP90 201 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 CLEC18AA5D8T8 446 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 PPIAL4DF5H284 164 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 MZT1Q08AG7 82 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 ZNF77Q15935 545 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 CLEC18CQ8NCF0 446 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 OR5D13Q8NGL4 314 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 TMEM40Q8WWA1 233 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 ZG16BQ96DA0 208 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 P2RX4Q99571 388 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 PLEKHJ1Q9NW61 149 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 RPS4Y1P22090 263 aaKnown RBP3□□□□□ -1.93
SYNE1-212ENST00000423061 PPP1CBP62140 327 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 POU2AF1Q16633 256 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 RPEL1Q2QD12 228 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 PNKDQ8N490 385 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 IL21Q9HBE4 155 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 CDC14CA4D256 554 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 DPRXA6NFQ7 191 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 C11orf98E9PRG8 122 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 HIST1H1DP16402 221 aaKnown RBP3□□□□□ -1.93
SYNE1-212ENST00000423061 GPR183P32249 361 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 RNFT1Q5M7Z0 435 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 IGSF8Q969P0 613 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 NPVFQ9HCQ7 196 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 GAPDHP04406 335 aaKnown RBP3□□□□□ -1.93
SYNE1-212ENST00000423061 FAM78AQ5JUQ0 283 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 OR4D11Q8NGI4 311 aa3□□□□□ -1.93
SYNE1-212ENST00000423061 LSM4Q9Y4Z0 139 aaKnown RBP3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms