RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 MINOS1Q5TGZ0 78 aa9.09□□□□□ -0.95
RFFL-204ENST00000414419 PRAMEF5Q5TYX0 476 aa9.09□□□□□ -0.95
RFFL-204ENST00000414419 RNLSQ5VYX0 342 aa9.09□□□□□ -0.95
RFFL-204ENST00000414419 HEPN1Q6WQI6 88 aa9.09□□□□□ -0.95
RFFL-204ENST00000414419 Q6ZSV7 163 aa9.09□□□□□ -0.95
RFFL-204ENST00000414419 DTX3Q8N9I9 347 aa9.09□□□□□ -0.95
RFFL-204ENST00000414419 LINC01006Q8NI28 216 aa9.09□□□□□ -0.95
RFFL-204ENST00000414419 AJUBAQ96IF1 538 aa9.09□□□□□ -0.95
RFFL-204ENST00000414419 NKX3-1Q99801 234 aaPredicted RBP9.09□□□□□ -0.95
RFFL-204ENST00000414419 IL36GQ9NZH8 169 aa9.09□□□□□ -0.95
RFFL-204ENST00000414419 ST3GAL6Q9Y274 331 aa9.09□□□□□ -0.95
RFFL-204ENST00000414419 MINOS1-NBL1R4GNA1 71 aa9.09□□□□□ -0.95
RFFL-204ENST00000414419 TRAV8-7A0A075B6U6 113 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 MEIKINA0A087WXM9 373 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 TRBV5-7A0A0A0MS05 114 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 ZNF729A6NN14 1252 aaPredicted RBP9.08□□□□□ -0.96
RFFL-204ENST00000414419 TOR1AO14656 332 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 GTF2F2P13984 249 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 FSTP19883 344 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 HTR1DP28221 377 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 GLP1RP43220 463 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 KCNJ3P48549 501 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 HSPA13P48723 471 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 ARHGDIBP52566 201 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 RBM11P57052 281 aaKnown RBP9.08□□□□□ -0.96
RFFL-204ENST00000414419 DOC2BQ14184 412 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 SPHARQ15513 63 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 SLC22A6Q4U2R8 563 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 ATAD3CQ5T2N8 411 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 BRICD5Q6PL45 260 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 LIAT1Q6ZQX7 453 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 LINC00596Q86U02 117 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 RTN4RL2Q86UN3 420 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 ABHD12Q8N2K0 398 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 MS4A15Q8N5U1 240 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 Q8NFD4 153 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 ZNF596Q8TC21 504 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 WFDC12Q8WWY7 111 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 COQ2Q96H96 371 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 DERL3Q96Q80 235 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 DPCDQ9BVM2 203 aaPredicted RBP9.08□□□□□ -0.96
RFFL-204ENST00000414419 CDCA4Q9BXL8 241 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 CCDC90BQ9GZT6 254 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 C16orf95Q9H693 158 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 PITPNC1Q9UKF7 332 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 MRPS28Q9Y2Q9 187 aaKnown RBP9.08□□□□□ -0.96
RFFL-204ENST00000414419 HILPDAQ9Y5L2 63 aa9.08□□□□□ -0.96
RFFL-204ENST00000414419 NBEAL1Q6ZS30 2694 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 TRAV24A0A0B4J272 114 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 MEGF11A6BM72 1044 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 VGLL3A8MV65 326 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 MMP23AO75900 390 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 TSPAN9O75954 239 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 MYF6P23409 242 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 NFYBP25208 207 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 GABRA5P31644 462 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 RAB13P51153 203 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 PRRX1P54821 245 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 MPV17LQ2QL34 196 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 NHLRC3Q5JS37 347 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 AWAT2Q6E213 333 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 SLC35E4Q6ICL7 350 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 GLIPR1L1Q6UWM5 242 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 IZUMO2Q6UXV1 221 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 CDH26Q8IXH8 852 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 DYNAPQ8N1N2 210 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 NKAIN3Q8N8D7 197 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 SUMF2Q8NBJ7 301 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 OR4C13Q8NGP0 309 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 NEK7Q8TDX7 302 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 MUL1Q969V5 352 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 CREB3L1Q96BA8 519 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 TMED9Q9BVK6 235 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 ANKRD60Q9BZ19 345 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 NPFFR1Q9GZQ6 430 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 PPIL3Q9H2H8 161 aaKnown RBP9.07□□□□□ -0.96
RFFL-204ENST00000414419 NCOR1P1Q9H4R4 102 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 ZNF696Q9H7X3 374 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 TCF7L1Q9HCS4 588 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 KIF25Q9UIL4 384 aa9.07□□□□□ -0.96
RFFL-204ENST00000414419 KBTBD11-OT1A0A1B0GTJ5 212 aa9.06□□□□□ -0.96
RFFL-204ENST00000414419 FAM172BPA6NC97 362 aa9.06□□□□□ -0.96
RFFL-204ENST00000414419 MAGEA13PA6NCF6 341 aa9.06□□□□□ -0.96
RFFL-204ENST00000414419 LEUTXA8MZ59 168 aa9.06□□□□□ -0.96
RFFL-204ENST00000414419 F2RL2O00254 374 aa9.06□□□□□ -0.96
RFFL-204ENST00000414419 GEMIN2O14893 280 aaKnown RBP9.06□□□□□ -0.96
RFFL-204ENST00000414419 RGS10O43665 173 aa9.06□□□□□ -0.96
RFFL-204ENST00000414419 CEACAM3P40198 252 aa9.06□□□□□ -0.96
RFFL-204ENST00000414419 SLC35A2P78381 396 aa9.06□□□□□ -0.96
RFFL-204ENST00000414419 ACSM3Q53FZ2 586 aa9.06□□□□□ -0.96
RFFL-204ENST00000414419 OR2T6Q8NHC8 308 aa9.06□□□□□ -0.96
RFFL-204ENST00000414419 UFD1Q92890 307 aa9.06□□□□□ -0.96
RFFL-204ENST00000414419 MRPS24Q96EL2 167 aaKnown RBP9.06□□□□□ -0.96
RFFL-204ENST00000414419 OR5M11Q96RB7 305 aa9.06□□□□□ -0.96
RFFL-204ENST00000414419 IFT22Q9H7X7 185 aa9.06□□□□□ -0.96
RFFL-204ENST00000414419 SPACA1Q9HBV2 294 aa9.06□□□□□ -0.96
RFFL-204ENST00000414419 DPM3Q9P2X0 92 aa9.06□□□□□ -0.96
RFFL-204ENST00000414419 TCF19Q9Y242 345 aa9.06□□□□□ -0.96
RFFL-204ENST00000414419 A0A1W2PP11 408 aa9.05□□□□□ -0.96
RFFL-204ENST00000414419 TMEM30CPA0ZSE6 113 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms