RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 PTGFRP43088 359 aa23.06■■□□□ 1.28
HMGB1-205ENST00000399494 EDDM3BP56851 147 aa23.06■■□□□ 1.28
HMGB1-205ENST00000399494 SCN1BQ07699 218 aa23.06■■□□□ 1.28
HMGB1-205ENST00000399494 MLLT11Q13015 90 aaPredicted RBP23.06■■□□□ 1.28
HMGB1-205ENST00000399494 TBCEQ15813 527 aaPredicted RBP23.06■■□□□ 1.28
HMGB1-205ENST00000399494 ACSM3Q53FZ2 586 aa23.06■■□□□ 1.28
HMGB1-205ENST00000399494 TMEM200BQ69YZ2 307 aa23.06■■□□□ 1.28
HMGB1-205ENST00000399494 Q6ZPA2 131 aa23.06■■□□□ 1.28
HMGB1-205ENST00000399494 OR8H2Q8N162 312 aa23.06■■□□□ 1.28
HMGB1-205ENST00000399494 ING4Q9UNL4 249 aa23.06■■□□□ 1.28
HMGB1-205ENST00000399494 MAGEA13PA6NCF6 341 aa23.05■■□□□ 1.28
HMGB1-205ENST00000399494 CHST1O43916 411 aa23.05■■□□□ 1.28
HMGB1-205ENST00000399494 ZNF44P15621 663 aa23.05■■□□□ 1.28
HMGB1-205ENST00000399494 FAM189A2Q15884 450 aa23.05■■□□□ 1.28
HMGB1-205ENST00000399494 JAGN1Q8N5M9 183 aa23.05■■□□□ 1.28
HMGB1-205ENST00000399494 MGLLQ99685 303 aa23.05■■□□□ 1.28
HMGB1-205ENST00000399494 CHST6Q9GZX3 395 aa23.05■■□□□ 1.28
HMGB1-205ENST00000399494 TMEM82A0PJX8 343 aa23.04■■□□□ 1.28
HMGB1-205ENST00000399494 HTR3BO95264 441 aa23.04■■□□□ 1.28
HMGB1-205ENST00000399494 OR2H2O95918 312 aa23.04■■□□□ 1.28
HMGB1-205ENST00000399494 VSIG10L2P0DP72 767 aa23.04■■□□□ 1.28
HMGB1-205ENST00000399494 TPBGQ13641 420 aa23.04■■□□□ 1.28
HMGB1-205ENST00000399494 EDDM3AQ14507 147 aa23.04■■□□□ 1.28
HMGB1-205ENST00000399494 INSL4Q14641 139 aa23.04■■□□□ 1.28
HMGB1-205ENST00000399494 GRK1Q15835 563 aa23.04■■□□□ 1.28
HMGB1-205ENST00000399494 ZNF367Q7RTV3 350 aa23.04■■□□□ 1.28
HMGB1-205ENST00000399494 OR10K1Q8NGX5 313 aa23.04■■□□□ 1.28
HMGB1-205ENST00000399494 NR1H4Q96RI1 486 aaPredicted RBP23.04■■□□□ 1.28
HMGB1-205ENST00000399494 NPFFR1Q9GZQ6 430 aa23.04■■□□□ 1.28
HMGB1-205ENST00000399494 METTL9Q9H1A3 318 aa23.04■■□□□ 1.28
HMGB1-205ENST00000399494 PIN1P1O15428 100 aa23.03■■□□□ 1.28
HMGB1-205ENST00000399494 RRP9O43818 475 aaKnown RBP23.03■■□□□ 1.28
HMGB1-205ENST00000399494 CDRT1O95170 752 aa23.03■■□□□ 1.28
HMGB1-205ENST00000399494 CSTBP04080 98 aaKnown RBP23.03■■□□□ 1.28
HMGB1-205ENST00000399494 ERVFRD-1P60508 538 aa23.03■■□□□ 1.28
HMGB1-205ENST00000399494 ELP2Q6IA86 826 aa23.03■■□□□ 1.28
HMGB1-205ENST00000399494 LIAT1Q6ZQX7 453 aa23.03■■□□□ 1.28
HMGB1-205ENST00000399494 REC114Q7Z4M0 266 aa23.03■■□□□ 1.28
HMGB1-205ENST00000399494 SVOPQ8N4V2 548 aa23.03■■□□□ 1.28
HMGB1-205ENST00000399494 DTX3Q8N9I9 347 aa23.03■■□□□ 1.28
HMGB1-205ENST00000399494 TMEM203Q969S6 136 aa23.03■■□□□ 1.28
HMGB1-205ENST00000399494 YTHDF1Q9BYJ9 559 aaKnown RBP23.03■■□□□ 1.28
HMGB1-205ENST00000399494 MRPS14O60783 128 aaKnown RBP23.02■■□□□ 1.28
HMGB1-205ENST00000399494 CPEP16870 476 aa23.02■■□□□ 1.28
HMGB1-205ENST00000399494 TRAM1Q15629 374 aa23.02■■□□□ 1.28
HMGB1-205ENST00000399494 UNQ9370/PRO34162Q6UXP9 181 aa23.02■■□□□ 1.28
HMGB1-205ENST00000399494 CEACAM19Q7Z692 300 aa23.02■■□□□ 1.28
HMGB1-205ENST00000399494 NKAIN3Q8N8D7 197 aa23.02■■□□□ 1.28
HMGB1-205ENST00000399494 ACOT13Q9NPJ3 140 aa23.02■■□□□ 1.28
HMGB1-205ENST00000399494 FAM90A8PA6NJQ4 464 aa23.01■■□□□ 1.27
HMGB1-205ENST00000399494 DEGS1O15121 323 aa23.01■■□□□ 1.27
HMGB1-205ENST00000399494 PSPNO60542 156 aa23.01■■□□□ 1.27
HMGB1-205ENST00000399494 PSMA1P25786 263 aaKnown RBP23.01■■□□□ 1.27
HMGB1-205ENST00000399494 LGALS4P56470 323 aa23.01■■□□□ 1.27
HMGB1-205ENST00000399494 FAM27D1Q5T7N8 215 aa23.01■■□□□ 1.27
HMGB1-205ENST00000399494 ASCL4Q6XD76 172 aa23.01■■□□□ 1.27
HMGB1-205ENST00000399494 LYG1Q8N1E2 194 aa23.01■■□□□ 1.27
HMGB1-205ENST00000399494 CHST4Q8NCG5 386 aa23.01■■□□□ 1.27
HMGB1-205ENST00000399494 OR4S1Q8NGB4 309 aa23.01■■□□□ 1.27
HMGB1-205ENST00000399494 ZNF702PQ9H963 129 aa23.01■■□□□ 1.27
HMGB1-205ENST00000399494 PCDHB16Q9NRJ7 776 aa23.01■■□□□ 1.27
HMGB1-205ENST00000399494 SERTAD4Q9NUC0 356 aa23.01■■□□□ 1.27
HMGB1-205ENST00000399494 hCG_1809904A0A1W2PP81 198 aa23■■□□□ 1.27
HMGB1-205ENST00000399494 A0A1W2PPE2 198 aa23■■□□□ 1.27
HMGB1-205ENST00000399494 A0A1W2PR64 198 aa23■■□□□ 1.27
HMGB1-205ENST00000399494 A0A1W2PRV1 198 aa23■■□□□ 1.27
HMGB1-205ENST00000399494 MGST3O14880 152 aa23■■□□□ 1.27
HMGB1-205ENST00000399494 SERPINA2P20848 420 aa23■■□□□ 1.27
HMGB1-205ENST00000399494 RPS25P62851 125 aaKnown RBP23■■□□□ 1.27
HMGB1-205ENST00000399494 HSD17B12Q53GQ0 312 aa23■■□□□ 1.27
HMGB1-205ENST00000399494 LHFPL4Q7Z7J7 247 aa23■■□□□ 1.27
HMGB1-205ENST00000399494 CDH26Q8IXH8 852 aa23■■□□□ 1.27
HMGB1-205ENST00000399494 DYNAPQ8N1N2 210 aa23■■□□□ 1.27
HMGB1-205ENST00000399494 MUL1Q969V5 352 aa23■■□□□ 1.27
HMGB1-205ENST00000399494 IL36GQ9NZH8 169 aa23■■□□□ 1.27
HMGB1-205ENST00000399494 MRPS28Q9Y2Q9 187 aaKnown RBP23■■□□□ 1.27
HMGB1-205ENST00000399494 VGLL3A8MV65 326 aa22.99■■□□□ 1.27
HMGB1-205ENST00000399494 ZNF780AO75290 641 aaPredicted RBP22.99■■□□□ 1.27
HMGB1-205ENST00000399494 CCL3L1P16619 93 aa22.99■■□□□ 1.27
HMGB1-205ENST00000399494 COX7A1P24310 79 aa22.99■■□□□ 1.27
HMGB1-205ENST00000399494 OR3A1P47881 315 aa22.99■■□□□ 1.27
HMGB1-205ENST00000399494 EMX1Q04741 257 aaPredicted RBP22.99■■□□□ 1.27
HMGB1-205ENST00000399494 ZNF273Q14593 569 aa22.99■■□□□ 1.27
HMGB1-205ENST00000399494 SLC22A6Q4U2R8 563 aa22.99■■□□□ 1.27
HMGB1-205ENST00000399494 OXLD1Q5BKU9 147 aa22.99■■□□□ 1.27
HMGB1-205ENST00000399494 Q8N2B8 174 aa22.99■■□□□ 1.27
HMGB1-205ENST00000399494 OSR2Q8N2R0 312 aa22.99■■□□□ 1.27
HMGB1-205ENST00000399494 CD28P10747 220 aa22.98■■□□□ 1.27
HMGB1-205ENST00000399494 LMO1P25800 156 aa22.98■■□□□ 1.27
HMGB1-205ENST00000399494 RAB13P51153 203 aa22.98■■□□□ 1.27
HMGB1-205ENST00000399494 MEF2CQ06413 473 aaPredicted RBP22.98■■□□□ 1.27
HMGB1-205ENST00000399494 GPR176Q14439 515 aa22.98■■□□□ 1.27
HMGB1-205ENST00000399494 HABP2Q14520 560 aaPredicted RBP22.98■■□□□ 1.27
HMGB1-205ENST00000399494 IL13RA2Q14627 380 aa22.98■■□□□ 1.27
HMGB1-205ENST00000399494 NSUN5P1Q3KNT7 163 aa22.98■■□□□ 1.27
HMGB1-205ENST00000399494 PIGYQ3MUY2 71 aa22.98■■□□□ 1.27
HMGB1-205ENST00000399494 AWAT2Q6E213 333 aa22.98■■□□□ 1.27
HMGB1-205ENST00000399494 Q6P435 159 aa22.98■■□□□ 1.27
HMGB1-205ENST00000399494 CCBE1Q6UXH8 406 aaPredicted RBP22.98■■□□□ 1.27
HMGB1-205ENST00000399494 TPRX1Q8N7U7 411 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms