RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 TRAPPC1Q9Y5R8 145 aa1.03□□□□□ -2.25
VPS13A-206ENST00000376646 R4GN34 69 aa1.03□□□□□ -2.25
VPS13A-206ENST00000376646 ABCB11O95342 1321 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 OTOGLQ3ZCN5 2332 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 NUP205Q92621 2012 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 IGHV2-26A0A0B4J1V2 119 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 A0A0B4J2C4 111 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 A8MWP4 228 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 LEUTXA8MZ59 168 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 C4orf51C9J302 202 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 F5H5P2 479 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 RNASEK-C17orf49H0YIS7 233 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 I3L4J1 428 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 M0QX08 132 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 CRXO43186 299 aaPredicted RBP1.02□□□□□ -2.25
VPS13A-206ENST00000376646 CA2P00918 260 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 SLC35E2BP0CK96 405 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 CGB3P0DN86 165 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 CGB7P0DN87 165 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 ZNF3P17036 446 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 SYT1P21579 422 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 PSMB9P28065 219 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 RAB31Q13636 194 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 USF2Q15853 346 aaPredicted RBP1.02□□□□□ -2.25
VPS13A-206ENST00000376646 GOLGA7BQ2TAP0 167 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 DEFB134Q4QY38 66 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 SPIN3Q5JUX0 258 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 ZNF470Q6ECI4 717 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 ZFAND6Q6FIF0 208 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 LAMTOR1Q6IAA8 161 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 DGAT2L6Q6ZPD8 337 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 CLEC20AQ6ZU45 233 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 FAM183BPQ6ZVS7 135 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 PAGE2Q7Z2X7 111 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 MRPL52Q86TS9 123 aaKnown RBP1.02□□□□□ -2.25
VPS13A-206ENST00000376646 CASTOR1Q8WTX7 329 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 ZBED3Q96IU2 234 aaPredicted RBP1.02□□□□□ -2.25
VPS13A-206ENST00000376646 BBS2Q9BXC9 721 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 ASF1BQ9NVP2 202 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 ZNF391Q9UJN7 358 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 POMPQ9Y244 141 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 CACNA1DQ01668 2161 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 SSH2Q76I76 1423 aa1.02□□□□□ -2.25
VPS13A-206ENST00000376646 IGHV3-21A0A0B4J1V1 117 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 TRAV8-2A0A0B4J237 113 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 A0A1B0GX12 115 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 ERICH2A1L162 156 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 FAM183AA6NL82 134 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 C15orf65H3BRN8 121 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 FABP7O15540 132 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 NEMFO60524 1076 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 PSIP1O75475 530 aaKnown RBP1.01□□□□□ -2.25
VPS13A-206ENST00000376646 IGLV6-57P01721 117 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 IGKV4-1P06312 121 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 GP1BAP07359 652 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 GABRA1P14867 456 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 CNTFRP26992 372 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 SPAM1P38567 509 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 CBX5P45973 191 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 IHHQ14623 411 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 OR4D1Q15615 310 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 ZBTB6Q15916 424 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 PYDC2Q56P42 97 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 LAIR2Q6ISS4 152 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 BRD3OSQ6XYD6 125 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 OLIG3Q7RTU3 272 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 ZIC4Q8N9L1 334 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 GTF2H4Q92759 462 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 CCDC127Q96BQ5 260 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 TVP23CQ96ET8 276 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 MRAP2Q96G30 205 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 ACBD6Q9BR61 282 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 FAAP24Q9BTP7 215 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 TSSK6Q9BXA6 273 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 METTL8Q9H825 291 aaKnown RBP1.01□□□□□ -2.25
VPS13A-206ENST00000376646 NID2Q14112 1375 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 PRR14LQ5THK1 2151 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 IQCF5A8MTL0 148 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 POLR3GO15318 223 aaPredicted RBP1.01□□□□□ -2.25
VPS13A-206ENST00000376646 TCF21O43680 179 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 NDUFS6O75380 124 aaKnown RBP1.01□□□□□ -2.25
VPS13A-206ENST00000376646 P0C880 135 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 RD3LP0DJH9 198 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 COL8A2P25067 703 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 ELK4P28324 431 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 CASQ1P31415 396 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 UGT2B10P36537 528 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 RHOAP61586 193 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 DYNLL1P63167 89 aaKnown RBP1.01□□□□□ -2.25
VPS13A-206ENST00000376646 ZNF141Q15928 474 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 LGALSLQ3ZCW2 172 aaPredicted RBP1.01□□□□□ -2.25
VPS13A-206ENST00000376646 AMMECR1LQ6DCA0 310 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 WDR59Q6PJI9 974 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 CYHR1Q6ZMK1 362 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 CPNE9Q8IYJ1 553 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 ZNF664Q8N3J9 261 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 SLC25A45Q8N413 288 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 C17orf78Q8N4C9 275 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 FAM45AQ8TCE6 357 aa1.01□□□□□ -2.25
VPS13A-206ENST00000376646 IGF2BP2-AS1Q96M15 143 aa1.01□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms