RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 FAAP24Q9BTP7 215 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 MMP26Q9NRE1 261 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 RPUSD1Q9UJJ7 312 aaKnown RBP18.34■□□□□ 0.53
SDC3-202ENST00000339394 HSF4Q9ULV5 492 aa18.34■□□□□ 0.53
SDC3-202ENST00000339394 UBE2QL1A1L167 161 aa18.33■□□□□ 0.52
SDC3-202ENST00000339394 HPGDSO60760 199 aa18.33■□□□□ 0.52
SDC3-202ENST00000339394 CD99P14209 185 aa18.33■□□□□ 0.52
SDC3-202ENST00000339394 RPL31P62899 125 aaKnown RBP18.33■□□□□ 0.52
SDC3-202ENST00000339394 PAX2Q02962 417 aa18.33■□□□□ 0.52
SDC3-202ENST00000339394 CYB5R2Q6BCY4 276 aa18.33■□□□□ 0.52
SDC3-202ENST00000339394 PLPPR1Q8TBJ4 325 aa18.33■□□□□ 0.52
SDC3-202ENST00000339394 RAB3CQ96E17 227 aa18.33■□□□□ 0.52
SDC3-202ENST00000339394 CMTM3Q96MX0 182 aa18.33■□□□□ 0.52
SDC3-202ENST00000339394 NXF2Q9GZY0 626 aaKnown RBP18.33■□□□□ 0.52
SDC3-202ENST00000339394 C19orf12Q9NSK7 152 aa18.33■□□□□ 0.52
SDC3-202ENST00000339394 A0A075B6Q4 140 aa18.32■□□□□ 0.52
SDC3-202ENST00000339394 CTDSP2O14595 271 aa18.32■□□□□ 0.52
SDC3-202ENST00000339394 SCGNO76038 276 aa18.32■□□□□ 0.52
SDC3-202ENST00000339394 TGFAP01135 160 aa18.32■□□□□ 0.52
SDC3-202ENST00000339394 INHBBP09529 407 aa18.32■□□□□ 0.52
SDC3-202ENST00000339394 ERP29P30040 261 aaKnown RBP18.32■□□□□ 0.52
SDC3-202ENST00000339394 GLIPR1P48060 266 aa18.32■□□□□ 0.52
SDC3-202ENST00000339394 P2RX3P56373 397 aa18.32■□□□□ 0.52
SDC3-202ENST00000339394 PAX5Q02548 391 aa18.32■□□□□ 0.52
SDC3-202ENST00000339394 KRBOX4Q5JUW0 171 aa18.32■□□□□ 0.52
SDC3-202ENST00000339394 MCFD2Q8NI22 146 aa18.32■□□□□ 0.52
SDC3-202ENST00000339394 RAB40AQ8WXH6 277 aa18.32■□□□□ 0.52
SDC3-202ENST00000339394 DACT3Q96B18 629 aaPredicted RBP18.32■□□□□ 0.52
SDC3-202ENST00000339394 PHF21AQ96BD5 680 aa18.32■□□□□ 0.52
SDC3-202ENST00000339394 S100A16Q96FQ6 103 aaKnown RBP18.32■□□□□ 0.52
SDC3-202ENST00000339394 PECRQ9BY49 303 aa18.32■□□□□ 0.52
SDC3-202ENST00000339394 ZMAT3Q9HA38 289 aaKnown RBP18.32■□□□□ 0.52
SDC3-202ENST00000339394 KCNK7Q9Y2U2 307 aa18.32■□□□□ 0.52
SDC3-202ENST00000339394 TRBV23-1A0A0A0MS06 115 aa18.31■□□□□ 0.52
SDC3-202ENST00000339394 RGS5O15539 181 aa18.31■□□□□ 0.52
SDC3-202ENST00000339394 APOA1P02647 267 aa18.31■□□□□ 0.52
SDC3-202ENST00000339394 EIF4EP06730 217 aaKnown RBP18.31■□□□□ 0.52
SDC3-202ENST00000339394 GNB3P16520 340 aa18.31■□□□□ 0.52
SDC3-202ENST00000339394 RSBN1Q5VWQ0 802 aaPredicted RBP18.31■□□□□ 0.52
SDC3-202ENST00000339394 LY6G5BQ8NDX9 201 aa18.31■□□□□ 0.52
SDC3-202ENST00000339394 DYRK2Q92630 601 aa18.31■□□□□ 0.52
SDC3-202ENST00000339394 C6orf62Q9GZU0 229 aaPredicted RBP18.31■□□□□ 0.52
SDC3-202ENST00000339394 HIF1ANQ9NWT6 349 aa18.31■□□□□ 0.52
SDC3-202ENST00000339394 ETAA1Q9NY74 926 aa18.31■□□□□ 0.52
SDC3-202ENST00000339394 ACANP16112 2415 aa18.31■□□□□ 0.52
SDC3-202ENST00000339394 CR1P17927 2039 aa18.3■□□□□ 0.52
SDC3-202ENST00000339394 ELK1P19419 428 aa18.3■□□□□ 0.52
SDC3-202ENST00000339394 CDK2P24941 298 aa18.3■□□□□ 0.52
SDC3-202ENST00000339394 C8orf46Q8TAG6 207 aa18.3■□□□□ 0.52
SDC3-202ENST00000339394 TMEM186Q96B77 213 aa18.3■□□□□ 0.52
SDC3-202ENST00000339394 NUDT16L1Q9BRJ7 211 aaKnown RBP18.3■□□□□ 0.52
SDC3-202ENST00000339394 DIABLOQ9NR28 239 aa18.3■□□□□ 0.52
SDC3-202ENST00000339394 HIVEP1P15822 2718 aa18.3■□□□□ 0.52
SDC3-202ENST00000339394 A0A0A6YYH2 397 aa18.3■□□□□ 0.52
SDC3-202ENST00000339394 TRAV20A0A0B4J274 112 aa18.3■□□□□ 0.52
SDC3-202ENST00000339394 PPIAL4CA0A0B4J2A2 164 aa18.3■□□□□ 0.52
SDC3-202ENST00000339394 IGHV2-70DA0A0C4DH43 119 aa18.3■□□□□ 0.52
SDC3-202ENST00000339394 KIR2DS1A0A191URI9 304 aa18.3■□□□□ 0.52
SDC3-202ENST00000339394 FUOMA2VDF0 154 aa18.3■□□□□ 0.52
SDC3-202ENST00000339394 A6NJ64 397 aa18.3■□□□□ 0.52
SDC3-202ENST00000339394 PPIAL4GP0DN37 164 aa18.3■□□□□ 0.52
SDC3-202ENST00000339394 HIST1H1DP16402 221 aaKnown RBP18.3■□□□□ 0.52
SDC3-202ENST00000339394 OLFML2AQ68BL7 652 aa18.3■□□□□ 0.52
SDC3-202ENST00000339394 TMEM200BQ69YZ2 307 aa18.3■□□□□ 0.52
SDC3-202ENST00000339394 SLC35E4Q6ICL7 350 aa18.3■□□□□ 0.52
SDC3-202ENST00000339394 ZNF497Q6ZNH5 498 aa18.3■□□□□ 0.52
SDC3-202ENST00000339394 DTX3Q8N9I9 347 aa18.3■□□□□ 0.52
SDC3-202ENST00000339394 MIXL1Q9H2W2 232 aa18.3■□□□□ 0.52
SDC3-202ENST00000339394 KIF25Q9UIL4 384 aa18.3■□□□□ 0.52
SDC3-202ENST00000339394 ABCA2Q9BZC7 2435 aa18.29■□□□□ 0.52
SDC3-202ENST00000339394 MEIKINA0A087WXM9 373 aa18.29■□□□□ 0.52
SDC3-202ENST00000339394 A0A1W2PQ09 198 aa18.29■□□□□ 0.52
SDC3-202ENST00000339394 ODAMA1E959 279 aa18.29■□□□□ 0.52
SDC3-202ENST00000339394 MEX3AA1L020 520 aaKnown RBP18.29■□□□□ 0.52
SDC3-202ENST00000339394 MFNGO00587 321 aa18.29■□□□□ 0.52
SDC3-202ENST00000339394 XRCC3O43542 346 aa18.29■□□□□ 0.52
SDC3-202ENST00000339394 ENSAO43768 121 aaKnown RBP18.29■□□□□ 0.52
SDC3-202ENST00000339394 FOSL1P15407 271 aa18.29■□□□□ 0.52
SDC3-202ENST00000339394 ZNF16P17020 682 aaPredicted RBP18.29■□□□□ 0.52
SDC3-202ENST00000339394 MEF2CQ06413 473 aaPredicted RBP18.29■□□□□ 0.52
SDC3-202ENST00000339394 KRTAP1-1Q07627 177 aa18.29■□□□□ 0.52
SDC3-202ENST00000339394 CDNFQ49AH0 187 aa18.29■□□□□ 0.52
SDC3-202ENST00000339394 LAX1Q8IWV1 398 aa18.29■□□□□ 0.52
SDC3-202ENST00000339394 FAM185AQ8N0U4 392 aa18.29■□□□□ 0.52
SDC3-202ENST00000339394 AK3Q9UIJ7 227 aa18.29■□□□□ 0.52
SDC3-202ENST00000339394 hADV38S2A0JD32 116 aa18.28■□□□□ 0.52
SDC3-202ENST00000339394 TMEM30CPA0ZSE6 113 aa18.28■□□□□ 0.52
SDC3-202ENST00000339394 CA11O75493 328 aa18.28■□□□□ 0.52
SDC3-202ENST00000339394 MT-ND4P03905 459 aa18.28■□□□□ 0.52
SDC3-202ENST00000339394 GLCCI1Q86VQ1 547 aa18.28■□□□□ 0.52
SDC3-202ENST00000339394 GAPTQ8N292 157 aa18.28■□□□□ 0.52
SDC3-202ENST00000339394 SMR3AQ99954 134 aa18.28■□□□□ 0.52
SDC3-202ENST00000339394 MMP27Q9H306 513 aa18.28■□□□□ 0.52
SDC3-202ENST00000339394 INSIG2Q9Y5U4 225 aa18.28■□□□□ 0.52
SDC3-202ENST00000339394 A3GALT2U3KPV4 340 aa18.28■□□□□ 0.52
SDC3-202ENST00000339394 CSPG4Q6UVK1 2322 aa18.27■□□□□ 0.52
SDC3-202ENST00000339394 TRAV18A0A075B6X5 111 aa18.27■□□□□ 0.52
SDC3-202ENST00000339394 FAM25AB3EWG3 89 aa18.27■□□□□ 0.52
SDC3-202ENST00000339394 FAM25CB3EWG5 89 aa18.27■□□□□ 0.52
SDC3-202ENST00000339394 FAM25GB3EWG6 89 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms