RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 EGLN1Q9GZT9 426 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 MS4A5Q9H3V2 200 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 UBTD1Q9HAC8 227 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 TREM2Q9NZC2 230 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 LRRK2Q5S007 2527 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 COL12A1Q99715 3063 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 TMEM235A6NFC5 223 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 G3V3Q6 166 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 CXCL3P19876 107 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 RBMXP38159 391 aaKnown RBP8.48□□□□□ -1.05
HMGB3-201ENST00000325307 RBM11P57052 281 aaKnown RBP8.48□□□□□ -1.05
HMGB3-201ENST00000325307 DHODHQ02127 395 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 SRSF1Q07955 248 aaKnown RBP eCLIP8.48□□□□□ -1.05
HMGB3-201ENST00000325307 FCN2Q15485 313 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 SPRNQ5BIV9 151 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 NHLRC3Q5JS37 347 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 SFRP4Q6FHJ7 346 aaPredicted RBP8.48□□□□□ -1.05
HMGB3-201ENST00000325307 Q6ZTK2 550 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 Q8IYB0 196 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 OR8H3Q8N146 312 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 LRRC29Q8WV35 223 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 FCAMRQ8WWV6 532 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 PLEKHJ1Q9NW61 149 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 IL36RNQ9UBH0 155 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 IL19Q9UHD0 177 aa8.48□□□□□ -1.05
HMGB3-201ENST00000325307 FCER2P06734 321 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 PLA2G2AP14555 144 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 TNFRSF1AP19438 455 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 FGF12P61328 243 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 EFNB3Q15768 340 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 LGALSLQ3ZCW2 172 aaPredicted RBP8.47□□□□□ -1.05
HMGB3-201ENST00000325307 WDR82Q6UXN9 313 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 RTN4RL2Q86UN3 420 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 EIF4E3Q8N5X7 224 aaKnown RBP8.47□□□□□ -1.05
HMGB3-201ENST00000325307 ARHGAP5-AS1Q96IT6 56 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 CYYR1Q96J86 154 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 SAP30LQ9HAJ7 183 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 UBQLN2Q9UHD9 624 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 CACNA1DQ01668 2161 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 HS3ST1O14792 307 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 HPXP02790 462 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 PGA5P0DJD9 388 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 GLRA1P23415 457 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 PRSS3P35030 304 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 C11orf53Q8IXP5 236 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 NEU1Q99519 415 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 TM2D1Q9BX74 207 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 SAV1Q9H4B6 383 aaPredicted RBP8.47□□□□□ -1.05
HMGB3-201ENST00000325307 PPP1R3CQ9UQK1 317 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 MEIS3P1A6NDR6 274 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 WNT9BO14905 357 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 HOXA4Q00056 320 aaPredicted RBP8.47□□□□□ -1.05
HMGB3-201ENST00000325307 ARFRP1Q13795 201 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 DAZAP2Q15038 168 aaPredicted RBP8.47□□□□□ -1.05
HMGB3-201ENST00000325307 TUSC1Q2TAM9 212 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 MST1LQ2TV78 715 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 CD276Q5ZPR3 534 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 ELP2Q6IA86 826 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 UXS1Q8NBZ7 420 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 BEST4Q8NFU0 473 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 ZNF431Q8TF32 576 aaPredicted RBP8.47□□□□□ -1.05
HMGB3-201ENST00000325307 LINC00052Q96N35 136 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 NRIP2Q9BQI9 281 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 WDR13Q9H1Z4 485 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 ZNF581Q9P0T4 197 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 OR14J1Q9UGF5 321 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 KCNK7Q9Y2U2 307 aa8.47□□□□□ -1.05
HMGB3-201ENST00000325307 H7C417 338 aa8.46□□□□□ -1.05
HMGB3-201ENST00000325307 IGHV2-70P01814 119 aa8.46□□□□□ -1.05
HMGB3-201ENST00000325307 IRF2P14316 349 aa8.46□□□□□ -1.05
HMGB3-201ENST00000325307 HIST1H1DP16402 221 aaKnown RBP8.46□□□□□ -1.05
HMGB3-201ENST00000325307 BRICD5Q6PL45 260 aa8.46□□□□□ -1.05
HMGB3-201ENST00000325307 C1orf122Q6ZSJ8 110 aa8.46□□□□□ -1.05
HMGB3-201ENST00000325307 C6orf201Q7Z4U5 140 aa8.46□□□□□ -1.05
HMGB3-201ENST00000325307 FAM89BQ8N5H3 189 aa8.46□□□□□ -1.05
HMGB3-201ENST00000325307 OR11L1Q8NGX0 322 aa8.46□□□□□ -1.05
HMGB3-201ENST00000325307 NEK7Q8TDX7 302 aa8.46□□□□□ -1.05
HMGB3-201ENST00000325307 EDARADDQ8WWZ3 215 aa8.46□□□□□ -1.05
HMGB3-201ENST00000325307 GSX2Q9BZM3 304 aa8.46□□□□□ -1.05
HMGB3-201ENST00000325307 TLNRD1Q9H1K6 362 aa8.46□□□□□ -1.05
HMGB3-201ENST00000325307 COPZ2Q9P299 210 aa8.46□□□□□ -1.05
HMGB3-201ENST00000325307 DNAJB11Q9UBS4 358 aa8.46□□□□□ -1.05
HMGB3-201ENST00000325307 MTFP1Q9UDX5 166 aa8.46□□□□□ -1.05
HMGB3-201ENST00000325307 MGAT4AQ9UM21 535 aa8.46□□□□□ -1.05
HMGB3-201ENST00000325307 UBR5O95071 2799 aaPredicted RBP8.46□□□□□ -1.05
HMGB3-201ENST00000325307 KRBOX1C9JBD0 128 aa8.46□□□□□ -1.06
HMGB3-201ENST00000325307 HSPB6O14558 160 aa8.46□□□□□ -1.06
HMGB3-201ENST00000325307 ZNF44P15621 663 aa8.46□□□□□ -1.06
HMGB3-201ENST00000325307 MRPS10P82664 201 aaKnown RBP8.46□□□□□ -1.06
HMGB3-201ENST00000325307 PLAC9Q5JTB6 97 aa8.46□□□□□ -1.06
HMGB3-201ENST00000325307 POC1AQ8NBT0 407 aa8.46□□□□□ -1.06
HMGB3-201ENST00000325307 RIMS4Q9H426 269 aaPredicted RBP8.46□□□□□ -1.06
HMGB3-201ENST00000325307 BEX1Q9HBH7 125 aa8.46□□□□□ -1.06
HMGB3-201ENST00000325307 GCM1Q9NP62 436 aa8.46□□□□□ -1.06
HMGB3-201ENST00000325307 LAMP3Q9UQV4 416 aa8.46□□□□□ -1.06
HMGB3-201ENST00000325307 MPTX1A8MV57 137 aa8.46□□□□□ -1.06
HMGB3-201ENST00000325307 COX6B1P14854 86 aa8.46□□□□□ -1.06
HMGB3-201ENST00000325307 RPL35P42766 123 aaKnown RBP8.46□□□□□ -1.06
HMGB3-201ENST00000325307 RAB13P51153 203 aa8.46□□□□□ -1.06
HMGB3-201ENST00000325307 RAG2P55895 527 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms