RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 CCPG1Q9ULG6 757 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 PDZRN3Q9UPQ7 1066 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 POLR3DP05423 398 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 ABCD1P33897 745 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 N4BP2L2Q92802 583 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 CDC5LQ99459 802 aaKnown RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 IL1RAPL2Q9NP60 686 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 GSTTP1A0A1W2PQM5 241 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 TP53BP1Q12888 1972 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 LGSNQ5TDP6 509 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 TMTC1Q8IUR5 882 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 RDH13Q8NBN7 331 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 PRAM1Q96QH2 718 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 MAP3K20Q9NYL2 800 aaKnown RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 SERPINA10Q9UK55 444 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 SATB2Q9UPW6 733 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 F5P12259 2224 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 FAM177A1Q8N128 213 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 AFAP1L2Q8N4X5 818 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 CCDC110Q8TBZ0 833 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 TBC1D31Q96DN5 1066 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 FAM193BQ96PV7 902 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 USTQ9Y2C2 406 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 CKAP5Q14008 2032 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 VGLL3A8MV65 326 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 ATP2A1O14983 1001 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 ERN1O75460 977 aaKnown RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 HEXIM1O94992 359 aaKnown RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 HSPA5P11021 654 aaKnown RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 CCT6AP40227 531 aaKnown RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 ATXN3P54252 364 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 NFE2L2Q16236 605 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 ARHGAP29Q52LW3 1261 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 SNX30Q5VWJ9 437 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 TAOK1Q7L7X3 1001 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 MAATS1Q7Z4T9 603 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 CTAGE6Q86UF2 777 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 TEX12Q9BXU0 123 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 ZBTB12Q9Y330 459 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 SAMM50Q9Y512 469 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 DHX57Q6P158 1386 aaKnown RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 BUB1BO60566 1050 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 ATP2C2O75185 946 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 HOXC8P31273 242 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 EZH2Q15910 746 aaKnown RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 CCDC38Q502W7 563 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 USP6NLQ92738 828 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 TANGO6Q9C0B7 1094 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 RIC8AQ9NPQ8 531 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 DDX21Q9NR30 783 aaKnown RBP eCLIP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 MSH6P52701 1360 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 KDM2BQ8NHM5 1336 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 H7C1D1 291 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 FOSP01100 380 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 ATP2A2P16615 1042 aaKnown RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 PCK1P35558 622 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 RANBP1P43487 201 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 BRPF1P55201 1214 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 ACRBPQ8NEB7 543 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 GCC1Q96CN9 775 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 SRRTQ9BXP5 876 aaKnown RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 SNRKQ9NRH2 765 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 ITM2BQ9Y287 266 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 LOXHD1Q8IVV2 1947 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 KRT87PA6NCN2 255 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 IDEP14735 1019 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 MXRA7P84157 204 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 PDE4BQ07343 736 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 GOLGA8FQ08AF8 430 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 GOLGA8DPQ0D2H9 430 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 AIMP1Q12904 312 aaKnown RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 EVI5LQ96CN4 794 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 CDCA7Q9BWT1 371 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 STIM2Q9P246 746 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 CSADQ9Y600 493 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 ANKRD30AQ9BXX3 1397 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 GNAI2P04899 355 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 MPOP05164 745 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 MAP2K2P36507 400 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 FBXW4P57775 412 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 DUS1LQ6P1R4 473 aaKnown RBP3.13□□□□□ -1.91
SCN1A-219ENST00000641575 CACNA2D3Q8IZS8 1091 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 NEK11Q8NG66 645 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 MORC4Q8TE76 937 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 GBP5Q96PP8 586 aa3.13□□□□□ -1.91
SCN1A-219ENST00000641575 KIF26BQ2KJY2 2108 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 RPGRIP1LQ68CZ1 1315 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 TPD52P55327 224 aaPredicted RBP3.12□□□□□ -1.91
SCN1A-219ENST00000641575 IFNL1Q8IU54 200 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 DCPSQ96C86 337 aaKnown RBP3.12□□□□□ -1.91
SCN1A-219ENST00000641575 RBM42Q9BTD8 480 aaKnown RBP3.12□□□□□ -1.91
SCN1A-219ENST00000641575 LNPKQ9C0E8 428 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 XAB2Q9HCS7 855 aaKnown RBP3.12□□□□□ -1.91
SCN1A-219ENST00000641575 PICK1Q9NRD5 415 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 ATP11AP98196 1134 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 RUFY3Q7L099 469 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 PPP1R14CQ8TAE6 165 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 CALML4Q96GE6 196 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 TSG101Q99816 390 aa3.12□□□□□ -1.91
SCN1A-219ENST00000641575 STN1Q9H668 368 aaKnown RBP3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms