RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 GALNT12Q8IXK2 581 aa8.4□□□□□ -1.06
CD44-239ENST00000639002 FAM129BQ96TA1 746 aa8.4□□□□□ -1.06
CD44-239ENST00000639002 SCO2A0A1W2PP80 73 aa8.39□□□□□ -1.07
CD44-239ENST00000639002 FAM177BA6PVY3 158 aa8.39□□□□□ -1.07
CD44-239ENST00000639002 C19orf57Q0VDD7 668 aa8.39□□□□□ -1.07
CD44-239ENST00000639002 ASAP3Q8TDY4 903 aa8.39□□□□□ -1.07
CD44-239ENST00000639002 TCF12Q99081 682 aa8.39□□□□□ -1.07
CD44-239ENST00000639002 RAXQ9Y2V3 346 aa8.39□□□□□ -1.07
CD44-239ENST00000639002 HYAL3O43820 417 aaPredicted RBP8.38□□□□□ -1.07
CD44-239ENST00000639002 DLGAP3O95886 979 aa8.38□□□□□ -1.07
CD44-239ENST00000639002 ESRRAP11474 423 aaPredicted RBP8.38□□□□□ -1.07
CD44-239ENST00000639002 ORC1Q13415 861 aa8.38□□□□□ -1.07
CD44-239ENST00000639002 IKBKEQ14164 716 aa8.38□□□□□ -1.07
CD44-239ENST00000639002 CEP41Q9BYV8 373 aa8.38□□□□□ -1.07
CD44-239ENST00000639002 GRIA4P48058 902 aa8.37□□□□□ -1.07
CD44-239ENST00000639002 SPRED3Q2MJR0 410 aa8.37□□□□□ -1.07
CD44-239ENST00000639002 CCNJLQ8IV13 435 aa8.37□□□□□ -1.07
CD44-239ENST00000639002 ZFP64Q9NPA5 681 aa8.37□□□□□ -1.07
CD44-239ENST00000639002 RNF112Q9ULX5 631 aa8.37□□□□□ -1.07
CD44-239ENST00000639002 MEGF11A6BM72 1044 aa8.36□□□□□ -1.07
CD44-239ENST00000639002 PREPP48147 710 aa8.36□□□□□ -1.07
CD44-239ENST00000639002 LRP8Q14114 963 aa8.36□□□□□ -1.07
CD44-239ENST00000639002 NRSN2Q9GZP1 204 aa8.36□□□□□ -1.07
CD44-239ENST00000639002 A0A096LPE4 126 aa8.35□□□□□ -1.07
CD44-239ENST00000639002 A0A1W2PPZ6 126 aa8.35□□□□□ -1.07
CD44-239ENST00000639002 GPR182O15218 404 aa8.35□□□□□ -1.07
CD44-239ENST00000639002 DHX15O43143 795 aaKnown RBP8.35□□□□□ -1.07
CD44-239ENST00000639002 NDUFB5O43674 189 aa8.35□□□□□ -1.07
CD44-239ENST00000639002 ARL4DP49703 201 aa8.35□□□□□ -1.07
CD44-239ENST00000639002 ZNF423Q2M1K9 1284 aa8.35□□□□□ -1.07
CD44-239ENST00000639002 KIAA0319Q5VV43 1072 aa8.35□□□□□ -1.07
CD44-239ENST00000639002 SLC51AQ86UW1 340 aa8.35□□□□□ -1.07
CD44-239ENST00000639002 UTP4Q969X6 686 aaKnown RBP8.35□□□□□ -1.07
CD44-239ENST00000639002 MYRFLQ96LU7 910 aa8.35□□□□□ -1.07
CD44-239ENST00000639002 RUSC1Q9BVN2 902 aa8.35□□□□□ -1.07
CD44-239ENST00000639002 RNF208Q9H0X6 261 aa8.35□□□□□ -1.07
CD44-239ENST00000639002 SOX17Q9H6I2 414 aaPredicted RBP8.35□□□□□ -1.07
CD44-239ENST00000639002 STOML1Q9UBI4 398 aa8.35□□□□□ -1.07
CD44-239ENST00000639002 LOC100289279A0A1B0GTE1 492 aa8.34□□□□□ -1.07
CD44-239ENST00000639002 UVSSAQ2YD98 709 aa8.34□□□□□ -1.07
CD44-239ENST00000639002 CITED4Q96RK1 184 aa8.34□□□□□ -1.07
CD44-239ENST00000639002 TMPRSS13Q9BYE2 586 aa8.34□□□□□ -1.07
CD44-239ENST00000639002 LIN7BQ9HAP6 207 aa8.34□□□□□ -1.07
CD44-239ENST00000639002 HMX2A2RU54 273 aa8.33□□□□□ -1.08
CD44-239ENST00000639002 SOWAHDA6NJG2 315 aa8.33□□□□□ -1.08
CD44-239ENST00000639002 IGLV1-40P01703 118 aa8.33□□□□□ -1.08
CD44-239ENST00000639002 ANKRD34AQ69YU3 496 aa8.33□□□□□ -1.08
CD44-239ENST00000639002 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.33□□□□□ -1.08
CD44-239ENST00000639002 TRIM42Q8IWZ5 723 aa8.33□□□□□ -1.08
CD44-239ENST00000639002 FAM20CQ8IXL6 584 aa8.33□□□□□ -1.08
CD44-239ENST00000639002 NIF3L1Q9GZT8 377 aa8.33□□□□□ -1.08
CD44-239ENST00000639002 C7orf69Q9H7B7 122 aa8.33□□□□□ -1.08
CD44-239ENST00000639002 CPNE3O75131 537 aaKnown RBP8.32□□□□□ -1.08
CD44-239ENST00000639002 BMP3P12645 472 aa8.32□□□□□ -1.08
CD44-239ENST00000639002 PDE3BQ13370 1112 aa8.32□□□□□ -1.08
CD44-239ENST00000639002 CCER1Q8TC90 406 aaPredicted RBP8.32□□□□□ -1.08
CD44-239ENST00000639002 NPHS2Q9NP85 383 aa8.32□□□□□ -1.08
CD44-239ENST00000639002 TIAF1O95411 115 aa8.31□□□□□ -1.08
CD44-239ENST00000639002 CTSBP07858 339 aa8.31□□□□□ -1.08
CD44-239ENST00000639002 GSTM4Q03013 218 aa8.31□□□□□ -1.08
CD44-239ENST00000639002 PCDH1Q08174 1060 aa8.31□□□□□ -1.08
CD44-239ENST00000639002 PDE4CQ08493 712 aa8.31□□□□□ -1.08
CD44-239ENST00000639002 SMG8Q8ND04 991 aaKnown RBP8.31□□□□□ -1.08
CD44-239ENST00000639002 USP26Q9BXU7 913 aa8.31□□□□□ -1.08
CD44-239ENST00000639002 CLEC4MQ9H2X3 399 aaPredicted RBP8.31□□□□□ -1.08
CD44-239ENST00000639002 GNEQ9Y223 722 aaKnown RBP8.31□□□□□ -1.08
CD44-239ENST00000639002 EIF1AYO14602 144 aaKnown RBP8.3□□□□□ -1.08
CD44-239ENST00000639002 MED26O95402 600 aa8.3□□□□□ -1.08
CD44-239ENST00000639002 NEFLP07196 543 aa8.3□□□□□ -1.08
CD44-239ENST00000639002 ZDHHC13Q8IUH4 622 aa8.3□□□□□ -1.08
CD44-239ENST00000639002 CLEC10AQ8IUN9 316 aa8.3□□□□□ -1.08
CD44-239ENST00000639002 CCDC74AQ96AQ1 378 aa8.3□□□□□ -1.08
CD44-239ENST00000639002 FAM83CQ9BQN1 747 aa8.3□□□□□ -1.08
CD44-239ENST00000639002 RBCK1Q9BYM8 510 aa8.3□□□□□ -1.08
CD44-239ENST00000639002 SUGCTQ9HAC7 445 aa8.3□□□□□ -1.08
CD44-239ENST00000639002 SART1O43290 800 aaKnown RBP8.29□□□□□ -1.08
CD44-239ENST00000639002 DRD2P14416 443 aa8.29□□□□□ -1.08
CD44-239ENST00000639002 ITPKAP23677 461 aa8.29□□□□□ -1.08
CD44-239ENST00000639002 NFIAQ12857 509 aa8.29□□□□□ -1.08
CD44-239ENST00000639002 EXOSC6Q5RKV6 272 aaKnown RBP8.29□□□□□ -1.08
CD44-239ENST00000639002 RNF43Q68DV7 783 aa8.29□□□□□ -1.08
CD44-239ENST00000639002 FDX2Q6P4F2 183 aa8.29□□□□□ -1.08
CD44-239ENST00000639002 GSC2O15499 205 aa8.28□□□□□ -1.08
CD44-239ENST00000639002 TGFB1P01137 390 aa8.28□□□□□ -1.08
CD44-239ENST00000639002 SGO2Q562F6 1265 aa8.28□□□□□ -1.08
CD44-239ENST00000639002 NUTM2GQ5VZR2 741 aa8.28□□□□□ -1.08
CD44-239ENST00000639002 BEND4Q6ZU67 534 aa8.28□□□□□ -1.08
CD44-239ENST00000639002 GLIS3Q8NEA6 775 aa8.28□□□□□ -1.08
CD44-239ENST00000639002 ALKBH8Q96BT7 664 aaKnown RBP8.28□□□□□ -1.08
CD44-239ENST00000639002 CSRNP1Q96S65 589 aa8.28□□□□□ -1.08
CD44-239ENST00000639002 TRIM56Q9BRZ2 755 aaKnown RBP8.28□□□□□ -1.08
CD44-239ENST00000639002 DNAJC25Q9H1X3 360 aa8.28□□□□□ -1.08
CD44-239ENST00000639002 EHD4Q9H223 541 aa8.28□□□□□ -1.08
CD44-239ENST00000639002 ZNF576Q9H609 170 aa8.28□□□□□ -1.08
CD44-239ENST00000639002 ABCB6Q9NP58 842 aa8.28□□□□□ -1.08
CD44-239ENST00000639002 PRR19A6NJB7 356 aa8.27□□□□□ -1.09
CD44-239ENST00000639002 ECEL1O95672 775 aa8.27□□□□□ -1.09
CD44-239ENST00000639002 BRD1O95696 1058 aa8.27□□□□□ -1.09
CD44-239ENST00000639002 SSTR4P31391 388 aa8.27□□□□□ -1.09
CD44-239ENST00000639002 CD97P48960 835 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms