RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 STYK1Q6J9G0 422 aa21.91■■□□□ 1.1
CLN3-263ENST00000637871 OLFM4Q6UX06 510 aa21.91■■□□□ 1.1
CLN3-263ENST00000637871 ZNF594Q96JF6 807 aaPredicted RBP21.91■■□□□ 1.1
CLN3-263ENST00000637871 DNAJC2Q99543 621 aaKnown RBP21.91■■□□□ 1.1
CLN3-263ENST00000637871 RPAP1Q9BWH6 1393 aaPredicted RBP21.9■■□□□ 1.1
CLN3-263ENST00000637871 GOLGA6L3A6NEY3 463 aa21.9■■□□□ 1.1
CLN3-263ENST00000637871 ZFYP08048 801 aaPredicted RBP21.9■■□□□ 1.1
CLN3-263ENST00000637871 ZNF512BQ96KM6 892 aaPredicted RBP21.89■■□□□ 1.09
CLN3-263ENST00000637871 PIM2Q9P1W9 311 aa21.89■■□□□ 1.09
CLN3-263ENST00000637871 RTL9Q8NET4 1388 aa21.88■■□□□ 1.09
CLN3-263ENST00000637871 TIMM10P62072 90 aa21.88■■□□□ 1.09
CLN3-263ENST00000637871 GRAPQ13588 217 aa21.88■■□□□ 1.09
CLN3-263ENST00000637871 BLOC1S2Q6QNY1 142 aa21.88■■□□□ 1.09
CLN3-263ENST00000637871 TTLL6Q8N841 843 aa21.88■■□□□ 1.09
CLN3-263ENST00000637871 GRAPLQ8TC17 118 aaPredicted RBP21.88■■□□□ 1.09
CLN3-263ENST00000637871 BCS1LQ9Y276 419 aa21.88■■□□□ 1.09
CLN3-263ENST00000637871 FSD2A1L4K1 749 aa21.88■■□□□ 1.09
CLN3-263ENST00000637871 GORABQ5T7V8 394 aa21.88■■□□□ 1.09
CLN3-263ENST00000637871 CRAMP1Q96RY5 1269 aa21.88■■□□□ 1.09
CLN3-263ENST00000637871 DSCC1Q9BVC3 393 aa21.88■■□□□ 1.09
CLN3-263ENST00000637871 ZDHHC9Q9Y397 364 aa21.88■■□□□ 1.09
CLN3-263ENST00000637871 HMGB1P09429 215 aaKnown RBP21.87■■□□□ 1.09
CLN3-263ENST00000637871 CNKSR1Q969H4 720 aa21.87■■□□□ 1.09
CLN3-263ENST00000637871 RIPOR2Q9Y4F9 1068 aa21.87■■□□□ 1.09
CLN3-263ENST00000637871 PPEF1O14829 653 aaPredicted RBP21.86■■□□□ 1.09
CLN3-263ENST00000637871 DALRD3Q5D0E6 543 aaKnown RBP21.86■■□□□ 1.09
CLN3-263ENST00000637871 TTC39AQ5SRH9 613 aa21.86■■□□□ 1.09
CLN3-263ENST00000637871 ZMYM1Q5SVZ6 1142 aa21.86■■□□□ 1.09
CLN3-263ENST00000637871 ATP6V1DQ9Y5K8 247 aa21.86■■□□□ 1.09
CLN3-263ENST00000637871 YBX3P16989 372 aaKnown RBP eCLIP21.85■■□□□ 1.09
CLN3-263ENST00000637871 ALDH1B1P30837 517 aa21.85■■□□□ 1.09
CLN3-263ENST00000637871 MCTP1Q6DN14 999 aa21.85■■□□□ 1.09
CLN3-263ENST00000637871 LDHAL6AQ6ZMR3 332 aa21.85■■□□□ 1.09
CLN3-263ENST00000637871 PUS3Q9BZE2 481 aaKnown RBP21.85■■□□□ 1.09
CLN3-263ENST00000637871 SMC3Q9UQE7 1217 aa21.85■■□□□ 1.09
CLN3-263ENST00000637871 DDX49Q9Y6V7 483 aaKnown RBP21.85■■□□□ 1.09
CLN3-263ENST00000637871 RNF113AO15541 343 aaKnown RBP21.84■■□□□ 1.09
CLN3-263ENST00000637871 C21orf2O43822 256 aa21.84■■□□□ 1.09
CLN3-263ENST00000637871 MRE11P49959 708 aa21.84■■□□□ 1.09
CLN3-263ENST00000637871 ANKRD18AQ8IVF6 992 aa21.84■■□□□ 1.09
CLN3-263ENST00000637871 CHMP4CQ96CF2 233 aa21.84■■□□□ 1.09
CLN3-263ENST00000637871 XAGE2Q96GT9 111 aa21.84■■□□□ 1.09
CLN3-263ENST00000637871 ARFGEF1Q9Y6D6 1849 aa21.84■■□□□ 1.09
CLN3-263ENST00000637871 GOLIM4O00461 696 aa21.84■■□□□ 1.09
CLN3-263ENST00000637871 RPS6KB1P23443 525 aa21.84■■□□□ 1.09
CLN3-263ENST00000637871 RPS8P62241 208 aaKnown RBP21.84■■□□□ 1.09
CLN3-263ENST00000637871 ADCK5Q3MIX3 580 aa21.84■■□□□ 1.09
CLN3-263ENST00000637871 ZNF589Q86UQ0 364 aaPredicted RBP21.84■■□□□ 1.09
CLN3-263ENST00000637871 CDC5LQ99459 802 aaKnown RBP21.84■■□□□ 1.09
CLN3-263ENST00000637871 LMBRD1Q9NUN5 540 aa21.84■■□□□ 1.09
CLN3-263ENST00000637871 LRRC37AA6NMS7 1700 aa21.83■■□□□ 1.09
CLN3-263ENST00000637871 MBD3O95983 291 aa21.83■■□□□ 1.08
CLN3-263ENST00000637871 METTL24Q5JXM2 366 aa21.83■■□□□ 1.08
CLN3-263ENST00000637871 EDC3Q96F86 508 aaKnown RBP21.83■■□□□ 1.08
CLN3-263ENST00000637871 PKP1Q13835 747 aa21.82■■□□□ 1.08
CLN3-263ENST00000637871 TTF1Q15361 905 aaPredicted RBP21.82■■□□□ 1.08
CLN3-263ENST00000637871 ATP2B3Q16720 1220 aa21.82■■□□□ 1.08
CLN3-263ENST00000637871 ZSCAN25Q6NSZ9 544 aa21.82■■□□□ 1.08
CLN3-263ENST00000637871 NOL8Q76FK4 1167 aaKnown RBP21.82■■□□□ 1.08
CLN3-263ENST00000637871 CNNM1Q9NRU3 951 aa21.82■■□□□ 1.08
CLN3-263ENST00000637871 MROH5Q6ZUA9 1318 aa21.82■■□□□ 1.08
CLN3-263ENST00000637871 A0A1B0GUL6 1792 aa21.82■■□□□ 1.08
CLN3-263ENST00000637871 IGHMBP2P38935 993 aaKnown RBP21.81■■□□□ 1.08
CLN3-263ENST00000637871 NEK1Q96PY6 1258 aa21.81■■□□□ 1.08
CLN3-263ENST00000637871 UQCRFS1P1P0C7P4 283 aa21.8■■□□□ 1.08
CLN3-263ENST00000637871 PDCP20941 246 aa21.8■■□□□ 1.08
CLN3-263ENST00000637871 C7orf43Q8WVR3 580 aa21.8■■□□□ 1.08
CLN3-263ENST00000637871 CTNNA3Q9UI47 895 aa21.8■■□□□ 1.08
CLN3-263ENST00000637871 BBOX1O75936 387 aa21.8■■□□□ 1.08
CLN3-263ENST00000637871 MPHOSPH8Q99549 860 aa21.8■■□□□ 1.08
CLN3-263ENST00000637871 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.8■■□□□ 1.082e-6■■■■■ 40.7
CLN3-263ENST00000637871 GZF1Q9H116 711 aaPredicted RBP21.8■■□□□ 1.08
CLN3-263ENST00000637871 PDE8BO95263 885 aa21.79■■□□□ 1.08
CLN3-263ENST00000637871 ATP6V0A2Q9Y487 856 aa21.79■■□□□ 1.08
CLN3-263ENST00000637871 GPR162Q16538 588 aa21.78■■□□□ 1.08
CLN3-263ENST00000637871 CSPP1Q1MSJ5 1256 aa21.78■■□□□ 1.08
CLN3-263ENST00000637871 HELBQ8NG08 1087 aaPredicted RBP21.78■■□□□ 1.08
CLN3-263ENST00000637871 BSDC1Q9NW68 430 aaPredicted RBP21.78■■□□□ 1.08
CLN3-263ENST00000637871 SNED1Q8TER0 1413 aa21.78■■□□□ 1.08
CLN3-263ENST00000637871 DUOX1Q9NRD9 1551 aa21.77■■□□□ 1.08
CLN3-263ENST00000637871 WTIPA6NIX2 430 aaPredicted RBP21.77■■□□□ 1.08
CLN3-263ENST00000637871 STX6O43752 255 aa21.77■■□□□ 1.08
CLN3-263ENST00000637871 ZSCAN22P10073 491 aaPredicted RBP21.77■■□□□ 1.08
CLN3-263ENST00000637871 NCLP19338 710 aaKnown RBP21.77■■□□□ 1.08
CLN3-263ENST00000637871 VGLL2Q8N8G2 317 aa21.77■■□□□ 1.08
CLN3-263ENST00000637871 LPIN2Q92539 896 aa21.77■■□□□ 1.08
CLN3-263ENST00000637871 LTBP1Q14766 1721 aa21.77■■□□□ 1.08
CLN3-263ENST00000637871 GPSM2P81274 684 aa21.77■■□□□ 1.07
CLN3-263ENST00000637871 SP8Q8IXZ3 490 aa21.77■■□□□ 1.07
CLN3-263ENST00000637871 MINPP1Q9UNW1 487 aa21.77■■□□□ 1.07
CLN3-263ENST00000637871 FER1L6Q2WGJ9 1857 aa21.76■■□□□ 1.07
CLN3-263ENST00000637871 SNAP23O00161 211 aa21.76■■□□□ 1.07
CLN3-263ENST00000637871 PRPF40AO75400 957 aaKnown RBP21.76■■□□□ 1.07
CLN3-263ENST00000637871 FKBP4Q02790 459 aaKnown RBP eCLIP21.76■■□□□ 1.07
CLN3-263ENST00000637871 PUM3Q15397 648 aaKnown RBP21.76■■□□□ 1.07
CLN3-263ENST00000637871 ME3Q16798 604 aa21.76■■□□□ 1.07
CLN3-263ENST00000637871 APPBP2Q92624 585 aa21.76■■□□□ 1.07
CLN3-263ENST00000637871 GPR101Q96P66 508 aaPredicted RBP21.76■■□□□ 1.07
CLN3-263ENST00000637871 ZNF445P59923 1031 aa21.75■■□□□ 1.07
CLN3-263ENST00000637871 RASSF7Q02833 373 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms