RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 CLRN2A0PK11 232 aa24.71■■□□□ 1.55
CLN3-262ENST00000637699 FOXO4P98177 505 aa24.71■■□□□ 1.55
CLN3-262ENST00000637699 C15orf52Q6ZUT6 534 aaKnown RBP24.71■■□□□ 1.55
CLN3-262ENST00000637699 MTMR14Q8NCE2 650 aa24.71■■□□□ 1.55
CLN3-262ENST00000637699 CLMNQ96JQ2 1002 aa24.71■■□□□ 1.55
CLN3-262ENST00000637699 JAG2Q9Y219 1238 aa24.71■■□□□ 1.55
CLN3-262ENST00000637699 COL1A1P02452 1464 aaPredicted RBP24.7■■□□□ 1.55
CLN3-262ENST00000637699 FANCIQ9NVI1 1328 aa24.7■■□□□ 1.54
CLN3-262ENST00000637699 MANSC4A6NHS7 340 aaPredicted RBP24.7■■□□□ 1.54
CLN3-262ENST00000637699 PPP1R12BO60237 982 aaPredicted RBP24.7■■□□□ 1.54
CLN3-262ENST00000637699 ALDH1A1P00352 501 aa24.7■■□□□ 1.54
CLN3-262ENST00000637699 CFAP100Q494V2 611 aa24.7■■□□□ 1.54
CLN3-262ENST00000637699 ZNF804AQ7Z570 1209 aa24.7■■□□□ 1.54
CLN3-262ENST00000637699 MYO1BO43795 1136 aa24.69■■□□□ 1.54
CLN3-262ENST00000637699 IFNL1Q8IU54 200 aa24.69■■□□□ 1.54
CLN3-262ENST00000637699 PRMT6Q96LA8 375 aaPredicted RBP24.69■■□□□ 1.54
CLN3-262ENST00000637699 VEZTQ9HBM0 779 aa24.69■■□□□ 1.54
CLN3-262ENST00000637699 PCDH10Q9P2E7 1040 aa24.69■■□□□ 1.54
CLN3-262ENST00000637699 SALL2Q9Y467 1007 aaPredicted RBP24.69■■□□□ 1.54
CLN3-262ENST00000637699 F6X3S4 739 aa24.68■■□□□ 1.54
CLN3-262ENST00000637699 PLIN1O60240 522 aa24.68■■□□□ 1.54
CLN3-262ENST00000637699 VAMP4O75379 141 aa24.68■■□□□ 1.54
CLN3-262ENST00000637699 IL1R1P14778 569 aa24.68■■□□□ 1.54
CLN3-262ENST00000637699 INHBEP58166 350 aa24.68■■□□□ 1.54
CLN3-262ENST00000637699 MAP3K11Q16584 847 aa24.68■■□□□ 1.54
CLN3-262ENST00000637699 WNK4Q96J92 1243 aa24.68■■□□□ 1.54
CLN3-262ENST00000637699 PPP2R3BQ9Y5P8 575 aa24.68■■□□□ 1.54
CLN3-262ENST00000637699 SSC5DA1L4H1 1573 aa24.67■■□□□ 1.54
CLN3-262ENST00000637699 SPDYE2BA6NHP3 402 aa24.67■■□□□ 1.54
CLN3-262ENST00000637699 SPDYE6P0CI01 402 aa24.67■■□□□ 1.54
CLN3-262ENST00000637699 RBM5P52756 815 aaKnown RBP eCLIP24.67■■□□□ 1.54
CLN3-262ENST00000637699 SUPT20HL1Q3ZLR7 823 aa24.67■■□□□ 1.54
CLN3-262ENST00000637699 LMBR1LQ6UX01 489 aa24.67■■□□□ 1.54
CLN3-262ENST00000637699 ZNF594Q96JF6 807 aaPredicted RBP24.67■■□□□ 1.54
CLN3-262ENST00000637699 AOX1Q06278 1338 aa24.66■■□□□ 1.54
CLN3-262ENST00000637699 ZBTB48P10074 688 aaPredicted RBP24.66■■□□□ 1.54
CLN3-262ENST00000637699 EXOSC9Q06265 439 aaKnown RBP24.66■■□□□ 1.54
CLN3-262ENST00000637699 BEND3Q5T5X7 828 aa24.66■■□□□ 1.54
CLN3-262ENST00000637699 NBPF12Q5TAG4 269 aaPredicted RBP24.66■■□□□ 1.54
CLN3-262ENST00000637699 TRIM17Q9Y577 477 aa24.66■■□□□ 1.54
CLN3-262ENST00000637699 IGF2BP3O00425 579 aaKnown RBP eCLIP24.65■■□□□ 1.54
CLN3-262ENST00000637699 FKBP1AP62942 108 aaKnown RBP24.65■■□□□ 1.54
CLN3-262ENST00000637699 CCDC57Q2TAC2 916 aa24.65■■□□□ 1.54
CLN3-262ENST00000637699 TAF7LQ5H9L4 462 aa24.65■■□□□ 1.54
CLN3-262ENST00000637699 EPHA10Q5JZY3 1008 aa24.65■■□□□ 1.54
CLN3-262ENST00000637699 CACNA1FO60840 1977 aa24.64■■□□□ 1.54
CLN3-262ENST00000637699 LDHAL6AQ6ZMR3 332 aa24.64■■□□□ 1.54
CLN3-262ENST00000637699 CNNM1Q9NRU3 951 aa24.64■■□□□ 1.54
CLN3-262ENST00000637699 ECM29Q5VYK3 1845 aa24.63■■□□□ 1.53
CLN3-262ENST00000637699 A0A1B0GUL6 1792 aa24.63■■□□□ 1.53
CLN3-262ENST00000637699 USP2O75604 605 aaPredicted RBP24.63■■□□□ 1.53
CLN3-262ENST00000637699 IREB2P48200 963 aaKnown RBP24.63■■□□□ 1.53
CLN3-262ENST00000637699 RASA3Q14644 834 aa24.63■■□□□ 1.53
CLN3-262ENST00000637699 OTOP1Q7RTM1 612 aa24.63■■□□□ 1.53
CLN3-262ENST00000637699 NCBP3Q53F19 620 aaKnown RBP24.62■■□□□ 1.53
CLN3-262ENST00000637699 HTTP42858 3142 aa24.61■■□□□ 1.53
CLN3-262ENST00000637699 UNCXA6NJT0 531 aa24.61■■□□□ 1.53
CLN3-262ENST00000637699 GRM8O00222 908 aa24.61■■□□□ 1.53
CLN3-262ENST00000637699 GJA5P36382 358 aa24.61■■□□□ 1.53
CLN3-262ENST00000637699 WDR63Q8IWG1 891 aa24.61■■□□□ 1.53
CLN3-262ENST00000637699 ANKRD13AQ8IZ07 590 aa24.6■■□□□ 1.53
CLN3-262ENST00000637699 CRHR2Q13324 411 aa24.59■■□□□ 1.53
CLN3-262ENST00000637699 OTUD7BQ6GQQ9 843 aa24.59■■□□□ 1.53
CLN3-262ENST00000637699 MRS2Q9HD23 443 aa24.59■■□□□ 1.53
CLN3-262ENST00000637699 C9orf78Q9NZ63 289 aaPredicted RBP24.59■■□□□ 1.53
CLN3-262ENST00000637699 FAM205AQ6ZU69 1335 aa24.59■■□□□ 1.53
CLN3-262ENST00000637699 GYG1P46976 350 aa24.58■■□□□ 1.53
CLN3-262ENST00000637699 MFSD14BQ5SR56 506 aa24.58■■□□□ 1.53
CLN3-262ENST00000637699 CD99L2Q8TCZ2 262 aa24.58■■□□□ 1.53
CLN3-262ENST00000637699 ERO1AQ96HE7 468 aa24.58■■□□□ 1.53
CLN3-262ENST00000637699 TDRD3Q9H7E2 651 aaKnown RBP24.58■■□□□ 1.53
CLN3-262ENST00000637699 ELP3Q9H9T3 547 aa24.58■■□□□ 1.53
CLN3-262ENST00000637699 ZNF70Q9UC06 446 aaPredicted RBP24.58■■□□□ 1.53
CLN3-262ENST00000637699 TTF2Q9UNY4 1162 aaKnown RBP24.58■■□□□ 1.53
CLN3-262ENST00000637699 TDRD7Q8NHU6 1098 aaKnown RBP24.57■■□□□ 1.52
CLN3-262ENST00000637699 PTPN18Q99952 460 aa24.57■■□□□ 1.52
CLN3-262ENST00000637699 CENPFP49454 3210 aa24.57■■□□□ 1.52
CLN3-262ENST00000637699 POTEFA5A3E0 1075 aa24.56■■□□□ 1.52
CLN3-262ENST00000637699 HIBADHP31937 336 aaKnown RBP24.56■■□□□ 1.52
CLN3-262ENST00000637699 TNFAIP1Q13829 316 aa24.56■■□□□ 1.52
CLN3-262ENST00000637699 UBE4AQ14139 1066 aa24.56■■□□□ 1.52
CLN3-262ENST00000637699 SPDYE2Q495Y8 402 aa24.56■■□□□ 1.52
CLN3-262ENST00000637699 INTS3Q68E01 1043 aaKnown RBP24.56■■□□□ 1.52
CLN3-262ENST00000637699 SLC4A10Q6U841 1118 aa24.56■■□□□ 1.52
CLN3-262ENST00000637699 PUS3Q9BZE2 481 aaKnown RBP24.56■■□□□ 1.52
CLN3-262ENST00000637699 SPINK5Q9NQ38 1064 aaPredicted RBP24.56■■□□□ 1.52
CLN3-262ENST00000637699 SERPINA10Q9UK55 444 aa24.56■■□□□ 1.52
CLN3-262ENST00000637699 PTPN22Q9Y2R2 807 aa24.56■■□□□ 1.52
CLN3-262ENST00000637699 CDAN1Q8IWY9 1227 aa24.55■■□□□ 1.52
CLN3-262ENST00000637699 OPTNQ96CV9 577 aa24.55■■□□□ 1.52
CLN3-262ENST00000637699 FAM84BQ96KN1 310 aaPredicted RBP24.55■■□□□ 1.52
CLN3-262ENST00000637699 MKI67P46013 3256 aaKnown RBP24.55■■□□□ 1.52
CLN3-262ENST00000637699 TESPA1A2RU30 521 aaPredicted RBP24.54■■□□□ 1.52
CLN3-262ENST00000637699 TCP10L2B9ZVM9 353 aa24.54■■□□□ 1.52
CLN3-262ENST00000637699 DZIP1LQ8IYY4 767 aaKnown RBP24.54■■□□□ 1.52
CLN3-262ENST00000637699 EFCC1Q9HA90 598 aa24.54■■□□□ 1.52
CLN3-262ENST00000637699 LAMB1P07942 1786 aa24.53■■□□□ 1.52
CLN3-262ENST00000637699 ALDH1L1O75891 902 aa24.53■■□□□ 1.52
CLN3-262ENST00000637699 SP3Q02447 781 aa24.53■■□□□ 1.52
CLN3-262ENST00000637699 SUCLG2Q96I99 432 aa24.53■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms