RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 SPON1Q9HCB6 807 aa22.96■■□□□ 1.27
CLN3-258ENST00000637184 KIAA1551Q9HCM1 1747 aa22.96■■□□□ 1.27
CLN3-258ENST00000637184 ANO2Q9NQ90 1003 aa22.96■■□□□ 1.27
CLN3-258ENST00000637184 DUOX1Q9NRD9 1551 aa22.96■■□□□ 1.27
CLN3-258ENST00000637184 MYO5AQ9Y4I1 1855 aaKnown RBP22.96■■□□□ 1.27
CLN3-258ENST00000637184 A0A0D9SFI3 127 aa22.95■■□□□ 1.26
CLN3-258ENST00000637184 IDH1O75874 414 aaKnown RBP22.95■■□□□ 1.26
CLN3-258ENST00000637184 ZSCAN25Q6NSZ9 544 aa22.95■■□□□ 1.26
CLN3-258ENST00000637184 ZC3H12CQ9C0D7 883 aaKnown RBP22.95■■□□□ 1.26
CLN3-258ENST00000637184 PIM2Q9P1W9 311 aa22.95■■□□□ 1.26
CLN3-258ENST00000637184 PDS5AQ29RF7 1337 aaKnown RBP22.95■■□□□ 1.26
CLN3-258ENST00000637184 C21orf2O43822 256 aa22.94■■□□□ 1.26
CLN3-258ENST00000637184 KIAA1211Q6ZU35 1233 aa22.94■■□□□ 1.26
CLN3-258ENST00000637184 EYA3Q99504 573 aa22.94■■□□□ 1.26
CLN3-258ENST00000637184 COL1A1P02452 1464 aaPredicted RBP22.94■■□□□ 1.26
CLN3-258ENST00000637184 CHGBP05060 677 aa22.94■■□□□ 1.26
CLN3-258ENST00000637184 TDRD7Q8NHU6 1098 aaKnown RBP22.94■■□□□ 1.26
CLN3-258ENST00000637184 USP26Q9BXU7 913 aa22.94■■□□□ 1.26
CLN3-258ENST00000637184 DOCK2Q92608 1830 aa22.93■■□□□ 1.26
CLN3-258ENST00000637184 MAP3K12Q12852 859 aa22.93■■□□□ 1.26
CLN3-258ENST00000637184 GRIPAP1Q4V328 841 aa22.93■■□□□ 1.26
CLN3-258ENST00000637184 CD209Q9NNX6 404 aa22.93■■□□□ 1.26
CLN3-258ENST00000637184 HELLSQ9NRZ9 838 aa22.93■■□□□ 1.26
CLN3-258ENST00000637184 RIMBP2O15034 1052 aa22.92■■□□□ 1.26
CLN3-258ENST00000637184 MCMDC2Q4G0Z9 681 aa22.92■■□□□ 1.26
CLN3-258ENST00000637184 ZMYM1Q5SVZ6 1142 aa22.92■■□□□ 1.26
CLN3-258ENST00000637184 SLC9C2Q5TAH2 1124 aa22.92■■□□□ 1.26
CLN3-258ENST00000637184 LRP2BPQ9P2M1 347 aa22.92■■□□□ 1.26
CLN3-258ENST00000637184 ABCF2Q9UG63 623 aa22.92■■□□□ 1.26
CLN3-258ENST00000637184 IL1R1P14778 569 aa22.91■■□□□ 1.26
CLN3-258ENST00000637184 CHAF1AQ13111 956 aaPredicted RBP22.91■■□□□ 1.26
CLN3-258ENST00000637184 RTFDC1Q9BY42 306 aaPredicted RBP22.91■■□□□ 1.26
CLN3-258ENST00000637184 EPB41L2O43491 1005 aaKnown RBP22.91■■□□□ 1.26
CLN3-258ENST00000637184 ADD2P35612 726 aa22.91■■□□□ 1.26
CLN3-258ENST00000637184 RBM25P49756 843 aaKnown RBP22.91■■□□□ 1.26
CLN3-258ENST00000637184 SLFNL1Q499Z3 407 aa22.91■■□□□ 1.26
CLN3-258ENST00000637184 CCDC93Q567U6 631 aa22.91■■□□□ 1.26
CLN3-258ENST00000637184 SEC62Q99442 399 aaKnown RBP22.9■■□□□ 1.26
CLN3-258ENST00000637184 COA1Q9GZY4 146 aa22.9■■□□□ 1.26
CLN3-258ENST00000637184 BRCA1P38398 1863 aaKnown RBP22.89■■□□□ 1.26
CLN3-258ENST00000637184 SNED1Q8TER0 1413 aa22.89■■□□□ 1.26
CLN3-258ENST00000637184 UBE3CQ15386 1083 aa22.89■■□□□ 1.26
CLN3-258ENST00000637184 DALRD3Q5D0E6 543 aaKnown RBP22.89■■□□□ 1.26
CLN3-258ENST00000637184 SOGA3Q5TF21 947 aa22.89■■□□□ 1.26
CLN3-258ENST00000637184 RTKN2Q8IZC4 609 aa22.89■■□□□ 1.26
CLN3-258ENST00000637184 SUPT20HQ8NEM7 779 aa22.89■■□□□ 1.26
CLN3-258ENST00000637184 APPBP2Q92624 585 aa22.89■■□□□ 1.26
CLN3-258ENST00000637184 WWC3Q9ULE0 1092 aa22.89■■□□□ 1.26
CLN3-258ENST00000637184 G3V3G9 751 aa22.89■■□□□ 1.25
CLN3-258ENST00000637184 PDE6AP16499 860 aa22.89■■□□□ 1.25
CLN3-258ENST00000637184 DCAF8Q5TAQ9 597 aa22.89■■□□□ 1.25
CLN3-258ENST00000637184 ZNF589Q86UQ0 364 aaPredicted RBP22.89■■□□□ 1.25
CLN3-258ENST00000637184 WDR66Q8TBY9 1149 aa22.89■■□□□ 1.25
CLN3-258ENST00000637184 LSG1Q9H089 658 aaKnown RBP22.89■■□□□ 1.25
CLN3-258ENST00000637184 ANP32AP39687 249 aaKnown RBP22.88■■□□□ 1.25
CLN3-258ENST00000637184 ZGPATQ8N5A5 531 aaKnown RBP22.88■■□□□ 1.25
CLN3-258ENST00000637184 MAGEB6Q8N7X4 407 aa22.88■■□□□ 1.25
CLN3-258ENST00000637184 RAI14Q9P0K7 980 aa22.88■■□□□ 1.25
CLN3-258ENST00000637184 MAST3O60307 1309 aa22.87■■□□□ 1.25
CLN3-258ENST00000637184 CCDC171Q6TFL3 1326 aa22.87■■□□□ 1.25
CLN3-258ENST00000637184 ZNF532Q9HCE3 1301 aa22.87■■□□□ 1.25
CLN3-258ENST00000637184 MCCP23508 829 aa22.87■■□□□ 1.25
CLN3-258ENST00000637184 OSBP2Q969R2 916 aa22.87■■□□□ 1.25
CLN3-258ENST00000637184 JAG2Q9Y219 1238 aa22.87■■□□□ 1.25
CLN3-258ENST00000637184 SALL1Q9NSC2 1324 aa22.87■■□□□ 1.25
CLN3-258ENST00000637184 CCDC129Q6ZRS4 1044 aa22.86■■□□□ 1.25
CLN3-258ENST00000637184 ERICH6Q7L0X2 663 aa22.86■■□□□ 1.25
CLN3-258ENST00000637184 TCRBV5S4A2TA0A5A2 114 aa22.86■■□□□ 1.25
CLN3-258ENST00000637184 SPTY2D1Q68D10 685 aaPredicted RBP22.86■■□□□ 1.25
CLN3-258ENST00000637184 M0R2C6 588 aa22.85■■□□□ 1.25
CLN3-258ENST00000637184 PTH1RQ03431 593 aa22.85■■□□□ 1.25
CLN3-258ENST00000637184 DOK7Q18PE1 504 aa22.85■■□□□ 1.25
CLN3-258ENST00000637184 PSMD1Q99460 953 aa22.85■■□□□ 1.25
CLN3-258ENST00000637184 PUS7LQ9H0K6 701 aaKnown RBP22.85■■□□□ 1.25
CLN3-258ENST00000637184 CHD4Q14839 1912 aa22.85■■□□□ 1.25
CLN3-258ENST00000637184 CCDC88AQ3V6T2 1871 aa22.84■■□□□ 1.25
CLN3-258ENST00000637184 IGSF3O75054 1194 aa22.83■■□□□ 1.24
CLN3-258ENST00000637184 KIAA2012Q0VF49 1180 aa22.83■■□□□ 1.24
CLN3-258ENST00000637184 PODNQ7Z5L7 613 aa22.83■■□□□ 1.24
CLN3-258ENST00000637184 NLGN2Q8NFZ4 835 aa22.83■■□□□ 1.24
CLN3-258ENST00000637184 MAP4K1Q92918 833 aa22.83■■□□□ 1.24
CLN3-258ENST00000637184 FAM205AQ6ZU69 1335 aa22.82■■□□□ 1.24
CLN3-258ENST00000637184 LDHBP07195 334 aaKnown RBP22.82■■□□□ 1.24
CLN3-258ENST00000637184 CYP7A1P22680 504 aa22.82■■□□□ 1.24
CLN3-258ENST00000637184 PRDX5P30044 214 aa22.82■■□□□ 1.24
CLN3-258ENST00000637184 AOC3Q16853 763 aa22.82■■□□□ 1.24
CLN3-258ENST00000637184 NAA16Q6N069 864 aaPredicted RBP22.82■■□□□ 1.24
CLN3-258ENST00000637184 TBC1D22AQ8WUA7 517 aa22.82■■□□□ 1.24
CLN3-258ENST00000637184 DBNDD1Q9H9R9 158 aa22.82■■□□□ 1.24
CLN3-258ENST00000637184 BCS1LQ9Y276 419 aa22.82■■□□□ 1.24
CLN3-258ENST00000637184 GOLGB1Q14789 3259 aaKnown RBP22.81■■□□□ 1.24
CLN3-258ENST00000637184 PPIP5K2O43314 1243 aa22.81■■□□□ 1.24
CLN3-258ENST00000637184 HSPA4P34932 840 aa22.81■■□□□ 1.24
CLN3-258ENST00000637184 GTF2IP78347 998 aa22.81■■□□□ 1.24
CLN3-258ENST00000637184 TMED8Q6PL24 325 aaPredicted RBP22.81■■□□□ 1.24
CLN3-258ENST00000637184 GPAA1O43292 621 aa22.81■■□□□ 1.24
CLN3-258ENST00000637184 MECOMQ03112 1051 aa22.81■■□□□ 1.24
CLN3-258ENST00000637184 DZIP1Q86YF9 867 aaKnown RBP22.81■■□□□ 1.24
CLN3-258ENST00000637184 AIDAQ96BJ3 306 aa22.81■■□□□ 1.24
CLN3-258ENST00000637184 NSUN4Q96CB9 384 aaKnown RBP22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms