RNA–Protein interactions for RNA: ENST00000636238.1

CIITA-214, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-214ENST00000636238 SPDYE6P0CI01 402 aa9.4□□□□□ -0.9
CIITA-214ENST00000636238 CCDC30Q5VVM6 783 aa9.4□□□□□ -0.9
CIITA-214ENST00000636238 KIAA0825Q8IV33 1275 aa9.4□□□□□ -0.9
CIITA-214ENST00000636238 ZFYVE28Q9HCC9 887 aa9.4□□□□□ -0.9
CIITA-214ENST00000636238 RBBP6Q7Z6E9 1792 aaKnown RBP9.4□□□□□ -0.91
CIITA-214ENST00000636238 A0A1W2PPC1 479 aa9.39□□□□□ -0.91
CIITA-214ENST00000636238 EN2P19622 333 aaPredicted RBP9.39□□□□□ -0.91
CIITA-214ENST00000636238 GTF2A2P52657 109 aa9.39□□□□□ -0.91
CIITA-214ENST00000636238 SLC9C1Q4G0N8 1177 aa9.39□□□□□ -0.91
CIITA-214ENST00000636238 KSR2Q6VAB6 950 aa9.39□□□□□ -0.91
CIITA-214ENST00000636238 HELBQ8NG08 1087 aaPredicted RBP9.39□□□□□ -0.91
CIITA-214ENST00000636238 NKX2-3Q8TAU0 364 aa9.39□□□□□ -0.91
CIITA-214ENST00000636238 CD99L2Q8TCZ2 262 aa9.39□□□□□ -0.91
CIITA-214ENST00000636238 GREM2Q9H772 168 aa9.39□□□□□ -0.91
CIITA-214ENST00000636238 MBIPQ9NS73 344 aa9.39□□□□□ -0.91
CIITA-214ENST00000636238 COLQQ9Y215 455 aaPredicted RBP9.39□□□□□ -0.91
CIITA-214ENST00000636238 LAS1LQ9Y4W2 734 aaKnown RBP9.39□□□□□ -0.91
CIITA-214ENST00000636238 SSC5DA1L4H1 1573 aa9.38□□□□□ -0.91
CIITA-214ENST00000636238 H7C1W4 665 aa9.38□□□□□ -0.91
CIITA-214ENST00000636238 IL1R1P14778 569 aa9.38□□□□□ -0.91
CIITA-214ENST00000636238 KCNJ4P48050 445 aa9.38□□□□□ -0.91
CIITA-214ENST00000636238 GTF2IP78347 998 aa9.38□□□□□ -0.91
CIITA-214ENST00000636238 IRX6P78412 446 aaPredicted RBP9.38□□□□□ -0.91
CIITA-214ENST00000636238 PRKG1Q13976 671 aa9.38□□□□□ -0.91
CIITA-214ENST00000636238 KIF22Q14807 665 aa9.38□□□□□ -0.91
CIITA-214ENST00000636238 CCDC27Q2M243 656 aa9.38□□□□□ -0.91
CIITA-214ENST00000636238 ZNF804AQ7Z570 1209 aa9.38□□□□□ -0.91
CIITA-214ENST00000636238 WDR63Q8IWG1 891 aa9.38□□□□□ -0.91
CIITA-214ENST00000636238 TRMT2AQ8IZ69 625 aaKnown RBP9.38□□□□□ -0.91
CIITA-214ENST00000636238 FBXW7Q969H0 707 aa9.38□□□□□ -0.91
CIITA-214ENST00000636238 OTUD5Q96G74 571 aa9.38□□□□□ -0.91
CIITA-214ENST00000636238 CLMNQ96JQ2 1002 aa9.38□□□□□ -0.91
CIITA-214ENST00000636238 MPHOSPH8Q99549 860 aa9.38□□□□□ -0.91
CIITA-214ENST00000636238 PHAXQ9H814 394 aaKnown RBP9.38□□□□□ -0.91
CIITA-214ENST00000636238 CD209Q9NNX6 404 aa9.38□□□□□ -0.91
CIITA-214ENST00000636238 MKI67P46013 3256 aaKnown RBP9.37□□□□□ -0.91
CIITA-214ENST00000636238 E9PSI1 815 aa9.37□□□□□ -0.91
CIITA-214ENST00000636238 USP2O75604 605 aaPredicted RBP9.37□□□□□ -0.91
CIITA-214ENST00000636238 IGKV5-2P06315 115 aa9.37□□□□□ -0.91
CIITA-214ENST00000636238 CSF1RP07333 972 aa9.37□□□□□ -0.91
CIITA-214ENST00000636238 SLC4A8Q2Y0W8 1093 aa9.37□□□□□ -0.91
CIITA-214ENST00000636238 NCBP3Q53F19 620 aaKnown RBP9.37□□□□□ -0.91
CIITA-214ENST00000636238 HOOK2Q96ED9 719 aa9.37□□□□□ -0.91
CIITA-214ENST00000636238 MS4A4AQ96JQ5 239 aa9.37□□□□□ -0.91
CIITA-214ENST00000636238 PTPN18Q99952 460 aa9.37□□□□□ -0.91
CIITA-214ENST00000636238 MXD3Q9BW11 206 aa9.37□□□□□ -0.91
CIITA-214ENST00000636238 SERPINA10Q9UK55 444 aa9.37□□□□□ -0.91
CIITA-214ENST00000636238 SCAF8Q9UPN6 1271 aaKnown RBP9.37□□□□□ -0.91
CIITA-214ENST00000636238 MAP3K2Q9Y2U5 619 aa9.37□□□□□ -0.91
CIITA-214ENST00000636238 KIAA0100Q14667 2235 aaKnown RBP9.37□□□□□ -0.91
CIITA-214ENST00000636238 POLR2AP24928 1970 aaKnown RBP9.37□□□□□ -0.91
CIITA-214ENST00000636238 IRS2Q9Y4H2 1338 aa9.36□□□□□ -0.91
CIITA-214ENST00000636238 NEURL1BA8MQ27 555 aa9.36□□□□□ -0.91
CIITA-214ENST00000636238 ITGA6P23229 1130 aa9.36□□□□□ -0.91
CIITA-214ENST00000636238 RASA3Q14644 834 aa9.36□□□□□ -0.91
CIITA-214ENST00000636238 TAF1CQ15572 869 aaPredicted RBP9.36□□□□□ -0.91
CIITA-214ENST00000636238 CFAP100Q494V2 611 aa9.36□□□□□ -0.91
CIITA-214ENST00000636238 SPDYE2Q495Y8 402 aa9.36□□□□□ -0.91
CIITA-214ENST00000636238 TXNRD3Q86VQ6 643 aa9.36□□□□□ -0.91
CIITA-214ENST00000636238 ZNF428Q96B54 188 aa9.36□□□□□ -0.91
CIITA-214ENST00000636238 OPTNQ96CV9 577 aa9.36□□□□□ -0.91
CIITA-214ENST00000636238 CCDC85AQ96PX6 553 aaPredicted RBP9.36□□□□□ -0.91
CIITA-214ENST00000636238 HTATIP2Q9BUP3 242 aa9.36□□□□□ -0.91
CIITA-214ENST00000636238 MYH16Q9H6N6 1097 aa9.36□□□□□ -0.91
CIITA-214ENST00000636238 RCAN3Q9UKA8 241 aa9.36□□□□□ -0.91
CIITA-214ENST00000636238 PTCH2Q9Y6C5 1203 aa9.36□□□□□ -0.91
CIITA-214ENST00000636238 LAMB1P07942 1786 aa9.36□□□□□ -0.91
CIITA-214ENST00000636238 CEP290O15078 2479 aa9.36□□□□□ -0.91
CIITA-214ENST00000636238 FAM205AQ6ZU69 1335 aa9.35□□□□□ -0.91
CIITA-214ENST00000636238 PI4KAP2A4QPH2 592 aa9.35□□□□□ -0.91
CIITA-214ENST00000636238 H0YGN5 161 aa9.35□□□□□ -0.91
CIITA-214ENST00000636238 TLR2O60603 784 aa9.35□□□□□ -0.91
CIITA-214ENST00000636238 NEFLP07196 543 aa9.35□□□□□ -0.91
CIITA-214ENST00000636238 CETPP11597 493 aa9.35□□□□□ -0.91
CIITA-214ENST00000636238 TAF1P21675 1872 aa9.35□□□□□ -0.91
CIITA-214ENST00000636238 HOXD10P28358 340 aa9.35□□□□□ -0.91
CIITA-214ENST00000636238 GJA5P36382 358 aa9.35□□□□□ -0.91
CIITA-214ENST00000636238 TNNI2P48788 182 aa9.35□□□□□ -0.91
CIITA-214ENST00000636238 MAP3K9P80192 1104 aa9.35□□□□□ -0.91
CIITA-214ENST00000636238 CHRNDQ07001 517 aa9.35□□□□□ -0.91
CIITA-214ENST00000636238 NBPF12Q5TAG4 269 aaPredicted RBP9.35□□□□□ -0.91
CIITA-214ENST00000636238 CERS5Q8N5B7 392 aa9.35□□□□□ -0.91
CIITA-214ENST00000636238 PI4KAP1Q8N8J0 262 aa9.35□□□□□ -0.91
CIITA-214ENST00000636238 BRI3BPQ8WY22 251 aa9.35□□□□□ -0.91
CIITA-214ENST00000636238 TSR2Q969E8 191 aaKnown RBP9.35□□□□□ -0.91
CIITA-214ENST00000636238 STK31Q9BXU1 1019 aa9.35□□□□□ -0.91
CIITA-214ENST00000636238 NR2E3Q9Y5X4 410 aa9.35□□□□□ -0.91
CIITA-214ENST00000636238 CSADQ9Y600 493 aa9.35□□□□□ -0.91
CIITA-214ENST00000636238 CUL9Q8IWT3 2517 aa9.35□□□□□ -0.91
CIITA-214ENST00000636238 TRIOBPQ9H2D6 2365 aa9.35□□□□□ -0.91
CIITA-214ENST00000636238 CCL15-CCL14A0A0B4J2E2 113 aa9.34□□□□□ -0.91
CIITA-214ENST00000636238 ANKRD18BA2A2Z9 1011 aa9.34□□□□□ -0.91
CIITA-214ENST00000636238 SPDYE5A6NIY4 337 aa9.34□□□□□ -0.91
CIITA-214ENST00000636238 LACTBP83111 547 aaPredicted RBP9.34□□□□□ -0.91
CIITA-214ENST00000636238 HDLBPQ00341 1268 aaKnown RBP9.34□□□□□ -0.91
CIITA-214ENST00000636238 GCKRQ14397 625 aa9.34□□□□□ -0.91
CIITA-214ENST00000636238 CCL15Q16663 113 aa9.34□□□□□ -0.91
CIITA-214ENST00000636238 FKBP1CQ5VVH2 108 aa9.34□□□□□ -0.91
CIITA-214ENST00000636238 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.34□□□□□ -0.91
CIITA-214ENST00000636238 PRMT6Q96LA8 375 aaPredicted RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms