RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 SOGA3Q5TF21 947 aa17.08■□□□□ 0.33
CLN3-242ENST00000635958 RTKN2Q8IZC4 609 aa17.08■□□□□ 0.33
CLN3-242ENST00000635958 GPR101Q96P66 508 aaPredicted RBP17.08■□□□□ 0.33
CLN3-242ENST00000635958 EYA3Q99504 573 aa17.08■□□□□ 0.33
CLN3-242ENST00000635958 ESYT1Q9BSJ8 1104 aa17.07■□□□□ 0.32
CLN3-242ENST00000635958 ZC3H12CQ9C0D7 883 aaKnown RBP17.07■□□□□ 0.32
CLN3-242ENST00000635958 CD209Q9NNX6 404 aa17.07■□□□□ 0.32
CLN3-242ENST00000635958 WASHC4Q2M389 1173 aa17.07■□□□□ 0.32
CLN3-242ENST00000635958 LRRFIP1Q32MZ4 808 aaKnown RBP17.07■□□□□ 0.32
CLN3-242ENST00000635958 SUPT20HQ8NEM7 779 aa17.07■□□□□ 0.32
CLN3-242ENST00000635958 COA1Q9GZY4 146 aa17.07■□□□□ 0.32
CLN3-242ENST00000635958 DIAPH3Q9NSV4 1193 aa17.07■□□□□ 0.32
CLN3-242ENST00000635958 RUFY2Q8WXA3 655 aa17.06■□□□□ 0.32
CLN3-242ENST00000635958 PSMD1Q99460 953 aa17.06■□□□□ 0.32
CLN3-242ENST00000635958 UPF2Q9HAU5 1272 aaKnown RBP17.06■□□□□ 0.32
CLN3-242ENST00000635958 PIH1D3Q9NQM4 214 aaKnown RBP17.06■□□□□ 0.32
CLN3-242ENST00000635958 ZNF219Q9P2Y4 722 aaPredicted RBP17.06■□□□□ 0.32
CLN3-242ENST00000635958 IQSEC3Q9UPP2 1182 aaPredicted RBP17.06■□□□□ 0.32
CLN3-242ENST00000635958 COL1A1P02452 1464 aaPredicted RBP17.06■□□□□ 0.32
CLN3-242ENST00000635958 IGSF3O75054 1194 aa17.05■□□□□ 0.32
CLN3-242ENST00000635958 ZFYP08048 801 aaPredicted RBP17.05■□□□□ 0.32
CLN3-242ENST00000635958 RNF113AO15541 343 aaKnown RBP17.05■□□□□ 0.32
CLN3-242ENST00000635958 SGSM2O43147 1006 aa17.05■□□□□ 0.32
CLN3-242ENST00000635958 VPS33BQ9H267 617 aa17.05■□□□□ 0.32
CLN3-242ENST00000635958 SALL1Q9NSC2 1324 aa17.04■□□□□ 0.32
CLN3-242ENST00000635958 FRAT2O75474 233 aaPredicted RBP17.04■□□□□ 0.32
CLN3-242ENST00000635958 NMIQ13287 307 aaPredicted RBP17.04■□□□□ 0.32
CLN3-242ENST00000635958 ZSCAN25Q6NSZ9 544 aa17.04■□□□□ 0.32
CLN3-242ENST00000635958 CWC27Q6UX04 472 aaKnown RBP17.04■□□□□ 0.32
CLN3-242ENST00000635958 KLHL34Q8N239 644 aa17.04■□□□□ 0.32
CLN3-242ENST00000635958 NLGN2Q8NFZ4 835 aa17.04■□□□□ 0.32
CLN3-242ENST00000635958 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.04■□□□□ 0.322e-6■■■■■ 40.7
CLN3-242ENST00000635958 RAD50Q92878 1312 aa17.04■□□□□ 0.32
CLN3-242ENST00000635958 RIMBP2O15034 1052 aa17.03■□□□□ 0.32
CLN3-242ENST00000635958 EPB41L2O43491 1005 aaKnown RBP17.03■□□□□ 0.32
CLN3-242ENST00000635958 KIAA2012Q0VF49 1180 aa17.03■□□□□ 0.32
CLN3-242ENST00000635958 ZMYM1Q5SVZ6 1142 aa17.03■□□□□ 0.32
CLN3-242ENST00000635958 WDR66Q8TBY9 1149 aa17.03■□□□□ 0.32
CLN3-242ENST00000635958 FAM227BQ96M60 508 aa17.03■□□□□ 0.32
CLN3-242ENST00000635958 IL25Q9H293 177 aa17.03■□□□□ 0.32
CLN3-242ENST00000635958 FAM205AQ6ZU69 1335 aa17.03■□□□□ 0.32
CLN3-242ENST00000635958 REC8O95072 547 aa17.03■□□□□ 0.32
CLN3-242ENST00000635958 MAP3K12Q12852 859 aa17.03■□□□□ 0.32
CLN3-242ENST00000635958 UBE3CQ15386 1083 aa17.03■□□□□ 0.32
CLN3-242ENST00000635958 PODNQ7Z5L7 613 aa17.03■□□□□ 0.32
CLN3-242ENST00000635958 FHDC1Q9C0D6 1143 aaPredicted RBP17.03■□□□□ 0.32
CLN3-242ENST00000635958 HELLSQ9NRZ9 838 aa17.03■□□□□ 0.32
CLN3-242ENST00000635958 DOCK2Q92608 1830 aa17.02■□□□□ 0.32
CLN3-242ENST00000635958 A0A0D9SFI3 127 aa17.02■□□□□ 0.31
CLN3-242ENST00000635958 ADD2P35612 726 aa17.02■□□□□ 0.31
CLN3-242ENST00000635958 MFAP1P55081 439 aaKnown RBP17.02■□□□□ 0.31
CLN3-242ENST00000635958 TMED8Q6PL24 325 aaPredicted RBP17.02■□□□□ 0.31
CLN3-242ENST00000635958 MYH13Q9UKX3 1938 aa17.01■□□□□ 0.31
CLN3-242ENST00000635958 IDH1O75874 414 aaKnown RBP17.01■□□□□ 0.31
CLN3-242ENST00000635958 CHGBP05060 677 aa17.01■□□□□ 0.31
CLN3-242ENST00000635958 MCMDC2Q4G0Z9 681 aa17.01■□□□□ 0.31
CLN3-242ENST00000635958 SLC9C2Q5TAH2 1124 aa17.01■□□□□ 0.31
CLN3-242ENST00000635958 ZGPATQ8N5A5 531 aaKnown RBP17.01■□□□□ 0.31
CLN3-242ENST00000635958 MYO5AQ9Y4I1 1855 aaKnown RBP17.01■□□□□ 0.31
CLN3-242ENST00000635958 MYH7P12883 1935 aa17.01■□□□□ 0.31
CLN3-242ENST00000635958 TCRBV5S4A2TA0A5A2 114 aa17■□□□□ 0.31
CLN3-242ENST00000635958 PDE6AP16499 860 aa17■□□□□ 0.31
CLN3-242ENST00000635958 APPBP2Q92624 585 aa17■□□□□ 0.31
CLN3-242ENST00000635958 USP26Q9BXU7 913 aa17■□□□□ 0.31
CLN3-242ENST00000635958 LRP2BPQ9P2M1 347 aa17■□□□□ 0.31
CLN3-242ENST00000635958 CHD4Q14839 1912 aa17■□□□□ 0.31
CLN3-242ENST00000635958 CHAF1AQ13111 956 aaPredicted RBP17■□□□□ 0.31
CLN3-242ENST00000635958 SPTY2D1Q68D10 685 aaPredicted RBP17■□□□□ 0.31
CLN3-242ENST00000635958 SYT17Q9BSW7 474 aa17■□□□□ 0.31
CLN3-242ENST00000635958 ABCF2Q9UG63 623 aa17■□□□□ 0.31
CLN3-242ENST00000635958 WWC3Q9ULE0 1092 aa17■□□□□ 0.31
CLN3-242ENST00000635958 BCS1LQ9Y276 419 aa17■□□□□ 0.31
CLN3-242ENST00000635958 GOLGB1Q14789 3259 aaKnown RBP16.99■□□□□ 0.31
CLN3-242ENST00000635958 FER1L6Q2WGJ9 1857 aa16.99■□□□□ 0.31
CLN3-242ENST00000635958 DOK7Q18PE1 504 aa16.99■□□□□ 0.31
CLN3-242ENST00000635958 TBC1D22AQ8WUA7 517 aa16.99■□□□□ 0.31
CLN3-242ENST00000635958 OSBP2Q969R2 916 aa16.99■□□□□ 0.31
CLN3-242ENST00000635958 ARFGEF1Q9Y6D6 1849 aa16.99■□□□□ 0.31
CLN3-242ENST00000635958 AOC3Q16853 763 aa16.98■□□□□ 0.31
CLN3-242ENST00000635958 SLFNL1Q499Z3 407 aa16.98■□□□□ 0.31
CLN3-242ENST00000635958 TBC1D32Q96NH3 1257 aa16.98■□□□□ 0.31
CLN3-242ENST00000635958 SEC62Q99442 399 aaKnown RBP16.98■□□□□ 0.31
CLN3-242ENST00000635958 LSG1Q9H089 658 aaKnown RBP16.98■□□□□ 0.31
CLN3-242ENST00000635958 ZNF532Q9HCE3 1301 aa16.98■□□□□ 0.31
CLN3-242ENST00000635958 LTBP3Q9NS15 1303 aa16.98■□□□□ 0.31
CLN3-242ENST00000635958 G3V3G9 751 aa16.98■□□□□ 0.31
CLN3-242ENST00000635958 PPIP5K2O43314 1243 aa16.98■□□□□ 0.31
CLN3-242ENST00000635958 DCAF8Q5TAQ9 597 aa16.98■□□□□ 0.31
CLN3-242ENST00000635958 ZNF589Q86UQ0 364 aaPredicted RBP16.98■□□□□ 0.31
CLN3-242ENST00000635958 MAGEB6Q8N7X4 407 aa16.98■□□□□ 0.31
CLN3-242ENST00000635958 NFKBIEO00221 500 aa16.97■□□□□ 0.31
CLN3-242ENST00000635958 RBM25P49756 843 aaKnown RBP16.97■□□□□ 0.31
CLN3-242ENST00000635958 GTF2IP78347 998 aa16.97■□□□□ 0.31
CLN3-242ENST00000635958 TTLL5Q6EMB2 1281 aa16.97■□□□□ 0.31
CLN3-242ENST00000635958 ZNF384Q8TF68 577 aa16.97■□□□□ 0.31
CLN3-242ENST00000635958 NSUN4Q96CB9 384 aaKnown RBP16.97■□□□□ 0.31
CLN3-242ENST00000635958 C22orf23Q9BZE7 217 aa16.97■□□□□ 0.31
CLN3-242ENST00000635958 TAOK3Q9H2K8 898 aa16.97■□□□□ 0.31
CLN3-242ENST00000635958 DBNDD1Q9H9R9 158 aa16.97■□□□□ 0.31
CLN3-242ENST00000635958 ANO2Q9NQ90 1003 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms