RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 RBM26Q5T8P6 1007 aaKnown RBP25.61■■□□□ 1.69
CLN3-240ENST00000631023 CNTROBQ8N137 903 aa25.61■■□□□ 1.69
CLN3-240ENST00000631023 TRPM4Q8TD43 1214 aa25.61■■□□□ 1.69
CLN3-240ENST00000631023 FAM205AQ6ZU69 1335 aa25.61■■□□□ 1.69
CLN3-240ENST00000631023 HDAC9Q9UKV0 1011 aa25.61■■□□□ 1.69
CLN3-240ENST00000631023 HMMRO75330 724 aa25.6■■□□□ 1.69
CLN3-240ENST00000631023 HIRAP54198 1017 aaPredicted RBP25.6■■□□□ 1.69
CLN3-240ENST00000631023 KIF4BQ2VIQ3 1234 aa25.6■■□□□ 1.69
CLN3-240ENST00000631023 MAP1SQ66K74 1059 aaPredicted RBP25.6■■□□□ 1.69
CLN3-240ENST00000631023 GNL3LQ9NVN8 582 aaKnown RBP25.6■■□□□ 1.69
CLN3-240ENST00000631023 NOP58Q9Y2X3 529 aaKnown RBP25.6■■□□□ 1.69
CLN3-240ENST00000631023 ARAP2Q8WZ64 1704 aa25.59■■□□□ 1.69
CLN3-240ENST00000631023 PGAP2Q9UHJ9 254 aa25.59■■□□□ 1.69
CLN3-240ENST00000631023 KIAA0825Q8IV33 1275 aa25.58■■□□□ 1.69
CLN3-240ENST00000631023 MYOZ2Q9NPC6 264 aa25.58■■□□□ 1.69
CLN3-240ENST00000631023 IQSEC3Q9UPP2 1182 aaPredicted RBP25.58■■□□□ 1.69
CLN3-240ENST00000631023 JAG2Q9Y219 1238 aa25.58■■□□□ 1.69
CLN3-240ENST00000631023 A0A1B0GUL7 405 aa25.57■■□□□ 1.68
CLN3-240ENST00000631023 ITGBL1O95965 494 aaPredicted RBP25.57■■□□□ 1.68
CLN3-240ENST00000631023 APLP1P51693 650 aa25.57■■□□□ 1.68
CLN3-240ENST00000631023 TIMM10P62072 90 aa25.57■■□□□ 1.68
CLN3-240ENST00000631023 MFSD14BQ5SR56 506 aa25.56■■□□□ 1.68
CLN3-240ENST00000631023 CERS5Q8N5B7 392 aa25.56■■□□□ 1.68
CLN3-240ENST00000631023 TBC1D22AQ8WUA7 517 aa25.56■■□□□ 1.68
CLN3-240ENST00000631023 NEUROD6Q96NK8 337 aa25.56■■□□□ 1.68
CLN3-240ENST00000631023 TRPM7Q96QT4 1865 aa25.56■■□□□ 1.68
CLN3-240ENST00000631023 EGFRP00533 1210 aa25.56■■□□□ 1.68
CLN3-240ENST00000631023 CHAF1AQ13111 956 aaPredicted RBP25.56■■□□□ 1.68
CLN3-240ENST00000631023 HSP90AB4PQ58FF6 505 aa25.56■■□□□ 1.68
CLN3-240ENST00000631023 DCPSQ96C86 337 aaKnown RBP25.54■■□□□ 1.68
CLN3-240ENST00000631023 XAGE2Q96GT9 111 aa25.54■■□□□ 1.68
CLN3-240ENST00000631023 GPR108Q9NPR9 543 aa25.54■■□□□ 1.68
CLN3-240ENST00000631023 ADORA1P30542 326 aa25.53■■□□□ 1.68
CLN3-240ENST00000631023 GORABQ5T7V8 394 aa25.53■■□□□ 1.68
CLN3-240ENST00000631023 CDC37L1Q7L3B6 337 aa25.53■■□□□ 1.68
CLN3-240ENST00000631023 ERC1Q8IUD2 1116 aa25.53■■□□□ 1.68
CLN3-240ENST00000631023 PASKQ96RG2 1323 aa25.53■■□□□ 1.68
CLN3-240ENST00000631023 F8W031 263 aaPredicted RBP25.52■■□□□ 1.68
CLN3-240ENST00000631023 SEMA3EO15041 775 aa25.52■■□□□ 1.68
CLN3-240ENST00000631023 SCARF1Q14162 830 aa25.52■■□□□ 1.68
CLN3-240ENST00000631023 CCDC102BQ68D86 513 aa25.52■■□□□ 1.68
CLN3-240ENST00000631023 WDR66Q8TBY9 1149 aa25.52■■□□□ 1.68
CLN3-240ENST00000631023 PHKA1P46020 1223 aa25.52■■□□□ 1.68
CLN3-240ENST00000631023 DENND2AQ9ULE3 1009 aa25.52■■□□□ 1.68
CLN3-240ENST00000631023 EXOC6BQ9Y2D4 811 aa25.52■■□□□ 1.68
CLN3-240ENST00000631023 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.52■■□□□ 1.68
CLN3-240ENST00000631023 SIRT2Q8IXJ6 389 aa25.51■■□□□ 1.67
CLN3-240ENST00000631023 ECM29Q5VYK3 1845 aa25.5■■□□□ 1.67
CLN3-240ENST00000631023 ZBTB22O15209 634 aa25.5■■□□□ 1.67
CLN3-240ENST00000631023 DLGAP5Q15398 846 aa25.5■■□□□ 1.67
CLN3-240ENST00000631023 TNNI3KQ59H18 835 aa25.5■■□□□ 1.67
CLN3-240ENST00000631023 TTF2Q9UNY4 1162 aaKnown RBP25.5■■□□□ 1.67
CLN3-240ENST00000631023 FPGT-TNNI3KV9GXZ4 949 aa25.5■■□□□ 1.67
CLN3-240ENST00000631023 WNT10BO00744 389 aa25.49■■□□□ 1.67
CLN3-240ENST00000631023 KRT26Q7Z3Y9 468 aa25.49■■□□□ 1.67
CLN3-240ENST00000631023 GGA3Q9NZ52 723 aa25.49■■□□□ 1.67
CLN3-240ENST00000631023 SUGT1Q9Y2Z0 365 aa25.49■■□□□ 1.67
CLN3-240ENST00000631023 NBPF9Q3BBW0 867 aa25.48■■□□□ 1.67
CLN3-240ENST00000631023 SULF1Q8IWU6 871 aa25.48■■□□□ 1.67
CLN3-240ENST00000631023 MTMR14Q8NCE2 650 aa25.48■■□□□ 1.67
CLN3-240ENST00000631023 GLIS2Q9BZE0 524 aaPredicted RBP25.48■■□□□ 1.67
CLN3-240ENST00000631023 ANGEL2Q5VTE6 544 aaKnown RBP25.48■■□□□ 1.67
CLN3-240ENST00000631023 PITPNM2Q9BZ72 1349 aa25.47■■□□□ 1.67
CLN3-240ENST00000631023 TMEM88BA6NKF7 163 aa25.47■■□□□ 1.67
CLN3-240ENST00000631023 RBM5P52756 815 aaKnown RBP eCLIP25.47■■□□□ 1.67
CLN3-240ENST00000631023 USP48Q86UV5 1035 aa25.47■■□□□ 1.67
CLN3-240ENST00000631023 CREBZFQ9NS37 354 aa25.47■■□□□ 1.67
CLN3-240ENST00000631023 SERPINA10Q9UK55 444 aa25.47■■□□□ 1.67
CLN3-240ENST00000631023 TRAF5O00463 557 aa25.46■■□□□ 1.67
CLN3-240ENST00000631023 RAB11FIP3O75154 756 aa25.46■■□□□ 1.67
CLN3-240ENST00000631023 CFAP100Q494V2 611 aa25.46■■□□□ 1.67
CLN3-240ENST00000631023 MAST3O60307 1309 aa25.46■■□□□ 1.67
CLN3-240ENST00000631023 CEP350Q5VT06 3117 aa25.45■■□□□ 1.66
CLN3-240ENST00000631023 MYO1BO43795 1136 aa25.45■■□□□ 1.66
CLN3-240ENST00000631023 CCDC158Q5M9N0 1113 aa25.45■■□□□ 1.66
CLN3-240ENST00000631023 ZGPATQ8N5A5 531 aaKnown RBP25.45■■□□□ 1.66
CLN3-240ENST00000631023 KIF1BPQ96EK5 621 aa25.45■■□□□ 1.66
CLN3-240ENST00000631023 ZBED3Q96IU2 234 aaPredicted RBP25.45■■□□□ 1.66
CLN3-240ENST00000631023 CRBNQ96SW2 442 aa25.45■■□□□ 1.66
CLN3-240ENST00000631023 ASTN2O75129 1339 aaPredicted RBP25.45■■□□□ 1.66
CLN3-240ENST00000631023 UQCRFS1P1P0C7P4 283 aa25.44■■□□□ 1.66
CLN3-240ENST00000631023 HDLBPQ00341 1268 aaKnown RBP25.44■■□□□ 1.66
CLN3-240ENST00000631023 PDS5AQ29RF7 1337 aaKnown RBP25.44■■□□□ 1.66
CLN3-240ENST00000631023 COL1A1P02452 1464 aaPredicted RBP25.44■■□□□ 1.66
CLN3-240ENST00000631023 RASGRF1Q13972 1273 aa25.44■■□□□ 1.66
CLN3-240ENST00000631023 RHPN1Q8TCX5 695 aa25.44■■□□□ 1.66
CLN3-240ENST00000631023 SUPT16HQ9Y5B9 1047 aaKnown RBP25.44■■□□□ 1.66
CLN3-240ENST00000631023 SALL1Q9NSC2 1324 aa25.43■■□□□ 1.66
CLN3-240ENST00000631023 DBNDD2Q9BQY9 259 aa25.43■■□□□ 1.66
CLN3-240ENST00000631023 MRIQ9BWK5 157 aa25.43■■□□□ 1.66
CLN3-240ENST00000631023 SPDYE2BA6NHP3 402 aa25.42■■□□□ 1.66
CLN3-240ENST00000631023 APBB1O00213 710 aa25.42■■□□□ 1.66
CLN3-240ENST00000631023 LDHBP07195 334 aaKnown RBP25.42■■□□□ 1.66
CLN3-240ENST00000631023 SPDYE6P0CI01 402 aa25.42■■□□□ 1.66
CLN3-240ENST00000631023 ARID4AP29374 1257 aaPredicted RBP25.42■■□□□ 1.66
CLN3-240ENST00000631023 CRKP46108 304 aa25.42■■□□□ 1.66
CLN3-240ENST00000631023 HTRA3P83110 453 aa25.42■■□□□ 1.66
CLN3-240ENST00000631023 FMR1Q06787 632 aaKnown RBP eCLIP25.42■■□□□ 1.66
CLN3-240ENST00000631023 GRIK5Q16478 980 aa25.42■■□□□ 1.66
CLN3-240ENST00000631023 TTC39AQ5SRH9 613 aa25.42■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms