RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 COL16A1Q07092 1604 aaPredicted RBP12.54□□□□□ -0.4
VPS11-208ENST00000621676 PDE6AP16499 860 aa12.54□□□□□ -0.4
VPS11-208ENST00000621676 MCM4P33991 863 aa12.54□□□□□ -0.4
VPS11-208ENST00000621676 PLCB2Q00722 1185 aa12.54□□□□□ -0.4
VPS11-208ENST00000621676 MICU3Q86XE3 530 aa12.54□□□□□ -0.4
VPS11-208ENST00000621676 LCORLQ8N3X6 602 aa12.54□□□□□ -0.4
VPS11-208ENST00000621676 SLC4A4Q9Y6R1 1079 aa12.54□□□□□ -0.4
VPS11-208ENST00000621676 NFXL1Q6ZNB6 911 aa12.53□□□□□ -0.4
VPS11-208ENST00000621676 DBNDD1Q9H9R9 158 aa12.53□□□□□ -0.4
VPS11-208ENST00000621676 LRRC37A3O60309 1634 aa12.53□□□□□ -0.4
VPS11-208ENST00000621676 KDM3BQ7LBC6 1761 aa12.53□□□□□ -0.4
VPS11-208ENST00000621676 GJB2P29033 226 aa12.53□□□□□ -0.4
VPS11-208ENST00000621676 CACNB3P54284 484 aa12.53□□□□□ -0.4
VPS11-208ENST00000621676 MYH14Q7Z406 1995 aaKnown RBP12.53□□□□□ -0.4
VPS11-208ENST00000621676 TRAK2O60296 914 aa12.52□□□□□ -0.4
VPS11-208ENST00000621676 RBM5P52756 815 aaKnown RBP eCLIP12.52□□□□□ -0.4
VPS11-208ENST00000621676 PICALMQ13492 652 aa12.52□□□□□ -0.4
VPS11-208ENST00000621676 NECTIN1Q15223 517 aa12.52□□□□□ -0.4
VPS11-208ENST00000621676 RNF20Q5VTR2 975 aa12.52□□□□□ -0.4
VPS11-208ENST00000621676 MAP4K1Q92918 833 aa12.52□□□□□ -0.4
VPS11-208ENST00000621676 SF3B2Q13435 895 aaKnown RBP12.52□□□□□ -0.41
VPS11-208ENST00000621676 CAVIN1Q6NZI2 390 aaKnown RBP12.52□□□□□ -0.41
VPS11-208ENST00000621676 RALYLQ86SE5 291 aaKnown RBP12.52□□□□□ -0.41
VPS11-208ENST00000621676 NAPBQ9H115 298 aa12.52□□□□□ -0.41
VPS11-208ENST00000621676 CARMIL3Q8ND23 1372 aa12.52□□□□□ -0.41
VPS11-208ENST00000621676 ZNF213O14771 459 aa12.52□□□□□ -0.41
VPS11-208ENST00000621676 RANBP6O60518 1105 aaKnown RBP12.52□□□□□ -0.41
VPS11-208ENST00000621676 TAF1P21675 1872 aa12.52□□□□□ -0.41
VPS11-208ENST00000621676 FAM84BQ96KN1 310 aaPredicted RBP12.52□□□□□ -0.41
VPS11-208ENST00000621676 NHSL1Q5SYE7 1610 aa12.51□□□□□ -0.41
VPS11-208ENST00000621676 RNF214Q8ND24 703 aa12.51□□□□□ -0.41
VPS11-208ENST00000621676 USP42Q9H9J4 1324 aaKnown RBP12.51□□□□□ -0.41
VPS11-208ENST00000621676 MAP3K12Q12852 859 aa12.51□□□□□ -0.41
VPS11-208ENST00000621676 CYP2D6P10635 497 aa12.5□□□□□ -0.41
VPS11-208ENST00000621676 GTF2IP78347 998 aa12.5□□□□□ -0.41
VPS11-208ENST00000621676 FAM47AQ5JRC9 791 aa12.5□□□□□ -0.41
VPS11-208ENST00000621676 LIMCH1Q9UPQ0 1083 aa12.5□□□□□ -0.41
VPS11-208ENST00000621676 HIBADHP31937 336 aaKnown RBP12.5□□□□□ -0.41
VPS11-208ENST00000621676 LARP1BQ659C4 914 aaKnown RBP12.5□□□□□ -0.41
VPS11-208ENST00000621676 FTOQ9C0B1 505 aaKnown RBP eCLIP12.5□□□□□ -0.41
VPS11-208ENST00000621676 TOGARAM1Q9Y4F4 1720 aa12.5□□□□□ -0.41
VPS11-208ENST00000621676 E7EWF7 191 aa12.5□□□□□ -0.41
VPS11-208ENST00000621676 EIF6P56537 245 aaKnown RBP12.5□□□□□ -0.41
VPS11-208ENST00000621676 ZNF772Q68DY9 489 aaPredicted RBP12.5□□□□□ -0.41
VPS11-208ENST00000621676 DZIP1Q86YF9 867 aaKnown RBP12.5□□□□□ -0.41
VPS11-208ENST00000621676 AIFM3Q96NN9 605 aa12.5□□□□□ -0.41
VPS11-208ENST00000621676 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.5□□□□□ -0.41
VPS11-208ENST00000621676 BRPF3Q9ULD4 1205 aa12.5□□□□□ -0.41
VPS11-208ENST00000621676 ATP2B2Q01814 1243 aa12.49□□□□□ -0.41
VPS11-208ENST00000621676 PCDHAC2Q9Y5I4 1007 aa12.49□□□□□ -0.41
VPS11-208ENST00000621676 NMT2O60551 498 aa12.49□□□□□ -0.41
VPS11-208ENST00000621676 POLR3DP05423 398 aaPredicted RBP12.49□□□□□ -0.41
VPS11-208ENST00000621676 ST5P78524 1137 aa12.49□□□□□ -0.41
VPS11-208ENST00000621676 GPSM2P81274 684 aa12.49□□□□□ -0.41
VPS11-208ENST00000621676 VGLL2Q8N8G2 317 aa12.49□□□□□ -0.41
VPS11-208ENST00000621676 FAM184AQ8NB25 1140 aa12.49□□□□□ -0.41
VPS11-208ENST00000621676 PHKBQ93100 1093 aa12.49□□□□□ -0.41
VPS11-208ENST00000621676 CNPY2Q9Y2B0 182 aa12.49□□□□□ -0.41
VPS11-208ENST00000621676 ZDHHC9Q9Y397 364 aa12.49□□□□□ -0.41
VPS11-208ENST00000621676 ZNF804BA4D1E1 1349 aa12.49□□□□□ -0.41
VPS11-208ENST00000621676 PXDNLA1KZ92 1463 aa12.49□□□□□ -0.41
VPS11-208ENST00000621676 FAM196BA6NMK8 535 aa12.49□□□□□ -0.41
VPS11-208ENST00000621676 TCP10Q12799 353 aa12.49□□□□□ -0.41
VPS11-208ENST00000621676 ZMYM1Q5SVZ6 1142 aa12.49□□□□□ -0.41
VPS11-208ENST00000621676 NAA16Q6N069 864 aaPredicted RBP12.49□□□□□ -0.41
VPS11-208ENST00000621676 VIRMAQ69YN4 1812 aaKnown RBP12.48□□□□□ -0.41
VPS11-208ENST00000621676 GADD45BO75293 160 aaPredicted RBP12.48□□□□□ -0.41
VPS11-208ENST00000621676 CIAO1O76071 339 aa12.48□□□□□ -0.41
VPS11-208ENST00000621676 BAG4O95429 457 aaKnown RBP12.48□□□□□ -0.41
VPS11-208ENST00000621676 ADD1P35611 737 aaKnown RBP12.48□□□□□ -0.41
VPS11-208ENST00000621676 TRDNQ13061 729 aa12.48□□□□□ -0.41
VPS11-208ENST00000621676 SLC44A5Q8NCS7 719 aa12.48□□□□□ -0.41
VPS11-208ENST00000621676 H3BQV1 296 aa12.48□□□□□ -0.41
VPS11-208ENST00000621676 IMMTQ16891 758 aaKnown RBP12.48□□□□□ -0.41
VPS11-208ENST00000621676 IFFO2Q5TF58 517 aa12.48□□□□□ -0.41
VPS11-208ENST00000621676 CLEC4GQ6UXB4 293 aa12.48□□□□□ -0.41
VPS11-208ENST00000621676 KIAA0825Q8IV33 1275 aa12.48□□□□□ -0.41
VPS11-208ENST00000621676 MAPKAPK5Q8IW41 473 aa12.48□□□□□ -0.41
VPS11-208ENST00000621676 UIMC1Q96RL1 719 aa12.48□□□□□ -0.41
VPS11-208ENST00000621676 HIP1O00291 1037 aa12.47□□□□□ -0.41
VPS11-208ENST00000621676 C21orf2O43822 256 aa12.47□□□□□ -0.41
VPS11-208ENST00000621676 SYT1P21579 422 aa12.47□□□□□ -0.41
VPS11-208ENST00000621676 DNM1Q05193 864 aaKnown RBP12.47□□□□□ -0.41
VPS11-208ENST00000621676 GSE1Q14687 1217 aa12.47□□□□□ -0.41
VPS11-208ENST00000621676 RBM26Q5T8P6 1007 aaKnown RBP12.47□□□□□ -0.41
VPS11-208ENST00000621676 SNX21Q969T3 373 aa12.47□□□□□ -0.41
VPS11-208ENST00000621676 DYNLL2Q96FJ2 89 aa12.47□□□□□ -0.41
VPS11-208ENST00000621676 PARP3Q9Y6F1 533 aa12.47□□□□□ -0.41
VPS11-208ENST00000621676 COL14A1Q05707 1796 aaKnown RBP12.47□□□□□ -0.41
VPS11-208ENST00000621676 KLF18A0A0U1RQI7 1052 aa12.47□□□□□ -0.41
VPS11-208ENST00000621676 TBC1D10CQ8IV04 446 aa12.47□□□□□ -0.41
VPS11-208ENST00000621676 APPBP2Q92624 585 aa12.47□□□□□ -0.41
VPS11-208ENST00000621676 ERCC4Q92889 916 aaPredicted RBP12.47□□□□□ -0.41
VPS11-208ENST00000621676 NYXQ9GZU5 481 aa12.47□□□□□ -0.41
VPS11-208ENST00000621676 A0A087WWV3 80 aa12.47□□□□□ -0.41
VPS11-208ENST00000621676 USP17L12C9JPN9 530 aa12.47□□□□□ -0.41
VPS11-208ENST00000621676 USP17L21D6R901 530 aa12.47□□□□□ -0.41
VPS11-208ENST00000621676 CPLX1O14810 134 aa12.47□□□□□ -0.41
VPS11-208ENST00000621676 PRC1O43663 620 aa12.47□□□□□ -0.41
VPS11-208ENST00000621676 CPVLQ9H3G5 476 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms