RNA–Protein interactions for RNA: ENST00000620854.4

NEDD9-216, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5 BASIC

Gene NEDD9, Length 4,086 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-216ENST00000620854 MRPS27Q92552 414 aaKnown RBP8.04□□□□□ -1.12
NEDD9-216ENST00000620854 ZNF396Q96N95 335 aaPredicted RBP8.04□□□□□ -1.12
NEDD9-216ENST00000620854 CCDC85AQ96PX6 553 aaPredicted RBP8.04□□□□□ -1.12
NEDD9-216ENST00000620854 ARGLU1Q9NWB6 273 aaPredicted RBP8.04□□□□□ -1.12
NEDD9-216ENST00000620854 CALCOCO1Q9P1Z2 691 aa8.04□□□□□ -1.12
NEDD9-216ENST00000620854 FHOD1Q9Y613 1164 aa8.04□□□□□ -1.12
NEDD9-216ENST00000620854 CTAGE5O15320 804 aa8.04□□□□□ -1.12
NEDD9-216ENST00000620854 DDB1Q16531 1140 aa8.04□□□□□ -1.12
NEDD9-216ENST00000620854 SPECC1Q5M775 1068 aa8.04□□□□□ -1.12
NEDD9-216ENST00000620854 SNRPA1P09661 255 aaKnown RBP8.03□□□□□ -1.12
NEDD9-216ENST00000620854 PLA2G4AP47712 749 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 UBASH3AP57075 661 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 GSDMDP57764 484 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 KRT32Q14532 448 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 SARM1Q6SZW1 724 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 DPF2Q92785 391 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 KCNB2Q92953 911 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 KIAA1468Q9P260 1216 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 ERBB3P21860 1342 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 PATL2C9JE40 543 aaKnown RBP8.03□□□□□ -1.12
NEDD9-216ENST00000620854 CAVIN2O95810 425 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 CAPN2P17655 700 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 GNG11P61952 73 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 FKBP4Q02790 459 aaKnown RBP eCLIP8.03□□□□□ -1.12
NEDD9-216ENST00000620854 COPS6Q7L5N1 327 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 HMG20BQ9P0W2 317 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 CDC25BP30305 580 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 EVCP57679 992 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 FANCCQ00597 558 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 KARSQ15046 597 aaKnown RBP8.03□□□□□ -1.12
NEDD9-216ENST00000620854 MCMDC2Q4G0Z9 681 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 KRBA2Q6ZNG9 492 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 DHX32Q7L7V1 743 aaKnown RBP8.03□□□□□ -1.12
NEDD9-216ENST00000620854 C10orf67Q8IYJ2 551 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 ANKRD20A12PQ8NF67 263 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 TEX13AQ9BXU3 409 aaPredicted RBP8.03□□□□□ -1.12
NEDD9-216ENST00000620854 COL15A1P39059 1388 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 DLC1Q96QB1 1528 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 TMEM232C9JQI7 657 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 GIGYF1O75420 1035 aaPredicted RBP8.03□□□□□ -1.12
NEDD9-216ENST00000620854 ZNF202O95125 648 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 ETF1P62495 437 aaKnown RBP8.03□□□□□ -1.12
NEDD9-216ENST00000620854 OLFM4Q6UX06 510 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 LINS1Q8NG48 757 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 CPLX3Q8WVH0 158 aa8.03□□□□□ -1.12
NEDD9-216ENST00000620854 MCM6Q14566 821 aa8.02□□□□□ -1.13
NEDD9-216ENST00000620854 NFATC2IPQ8NCF5 419 aa8.02□□□□□ -1.13
NEDD9-216ENST00000620854 ENGASEQ8NFI3 743 aa8.02□□□□□ -1.13
NEDD9-216ENST00000620854 XAGE3Q8WTP9 111 aa8.02□□□□□ -1.13
NEDD9-216ENST00000620854 DCAF5Q96JK2 942 aa8.02□□□□□ -1.13
NEDD9-216ENST00000620854 C8orf76Q96K31 380 aa8.02□□□□□ -1.13
NEDD9-216ENST00000620854 AIFM3Q96NN9 605 aa8.02□□□□□ -1.13
NEDD9-216ENST00000620854 DESI2Q9BSY9 194 aa8.02□□□□□ -1.13
NEDD9-216ENST00000620854 IRX2Q9BZI1 471 aaPredicted RBP8.02□□□□□ -1.13
NEDD9-216ENST00000620854 ERICH2A1L162 156 aa8.02□□□□□ -1.13
NEDD9-216ENST00000620854 ANKRD65E5RJM6 399 aa8.02□□□□□ -1.13
NEDD9-216ENST00000620854 PHACTR2O75167 634 aa8.02□□□□□ -1.13
NEDD9-216ENST00000620854 IGKV5-2P06315 115 aa8.02□□□□□ -1.13
NEDD9-216ENST00000620854 LMAN1P49257 510 aa8.02□□□□□ -1.13
NEDD9-216ENST00000620854 ADKP55263 362 aaKnown RBP8.02□□□□□ -1.13
NEDD9-216ENST00000620854 CCDC57Q2TAC2 916 aa8.02□□□□□ -1.13
NEDD9-216ENST00000620854 FMR1NBQ8N0W7 255 aaPredicted RBP8.02□□□□□ -1.13
NEDD9-216ENST00000620854 SMARCE1Q969G3 411 aa8.02□□□□□ -1.13
NEDD9-216ENST00000620854 HOOK1Q9UJC3 728 aaKnown RBP8.02□□□□□ -1.13
NEDD9-216ENST00000620854 OVOS2A0A0J9YW53 1432 aa8.02□□□□□ -1.13
NEDD9-216ENST00000620854 OVOS2Q6IE36 1432 aa8.02□□□□□ -1.13
NEDD9-216ENST00000620854 SPTLC2O15270 562 aa8.02□□□□□ -1.13
NEDD9-216ENST00000620854 HMGB2P26583 209 aaKnown RBP8.02□□□□□ -1.13
NEDD9-216ENST00000620854 NAP1L1P55209 391 aaKnown RBP8.02□□□□□ -1.13
NEDD9-216ENST00000620854 ILDR1Q86SU0 546 aaPredicted RBP8.02□□□□□ -1.13
NEDD9-216ENST00000620854 CCDC82Q8N4S0 544 aa8.02□□□□□ -1.13
NEDD9-216ENST00000620854 CNNM1Q9NRU3 951 aa8.02□□□□□ -1.13
NEDD9-216ENST00000620854 U3KPZ7 1027 aaPredicted RBP8.02□□□□□ -1.13
NEDD9-216ENST00000620854 USP42Q9H9J4 1324 aaKnown RBP8.01□□□□□ -1.13
NEDD9-216ENST00000620854 KDRP35968 1356 aa8.01□□□□□ -1.13
NEDD9-216ENST00000620854 PDIA4P13667 645 aaKnown RBP8.01□□□□□ -1.13
NEDD9-216ENST00000620854 OAS2P29728 719 aaKnown RBP8.01□□□□□ -1.13
NEDD9-216ENST00000620854 PNOCQ13519 176 aa8.01□□□□□ -1.13
NEDD9-216ENST00000620854 HSP90B2PQ58FF3 399 aa8.01□□□□□ -1.13
NEDD9-216ENST00000620854 TNNI3KQ59H18 835 aa8.01□□□□□ -1.13
NEDD9-216ENST00000620854 CLIC6Q96NY7 704 aa8.01□□□□□ -1.13
NEDD9-216ENST00000620854 ORC3Q9UBD5 711 aaPredicted RBP8.01□□□□□ -1.13
NEDD9-216ENST00000620854 FPGT-TNNI3KV9GXZ4 949 aa8.01□□□□□ -1.13
NEDD9-216ENST00000620854 TRIM66O15016 1216 aa8.01□□□□□ -1.13
NEDD9-216ENST00000620854 ALDH1L1O75891 902 aa8.01□□□□□ -1.13
NEDD9-216ENST00000620854 TOP1P11387 765 aaKnown RBP8.01□□□□□ -1.13
NEDD9-216ENST00000620854 H2AFXP16104 143 aaPredicted RBP8.01□□□□□ -1.13
NEDD9-216ENST00000620854 PDIA3P30101 505 aaKnown RBP8.01□□□□□ -1.13
NEDD9-216ENST00000620854 PUF60Q9UHX1 559 aaKnown RBP8.01□□□□□ -1.13
NEDD9-216ENST00000620854 E7EWF7 191 aa8.01□□□□□ -1.13
NEDD9-216ENST00000620854 KIF2AO00139 706 aaPredicted RBP8.01□□□□□ -1.13
NEDD9-216ENST00000620854 RNMTO43148 476 aaKnown RBP8.01□□□□□ -1.13
NEDD9-216ENST00000620854 PFKFB2O60825 505 aa8.01□□□□□ -1.13
NEDD9-216ENST00000620854 CYP2C19P33261 490 aa8.01□□□□□ -1.13
NEDD9-216ENST00000620854 MTX1Q13505 466 aa8.01□□□□□ -1.13
NEDD9-216ENST00000620854 WWC2Q6AWC2 1192 aa8.01□□□□□ -1.13
NEDD9-216ENST00000620854 WDR24Q96S15 920 aa8.01□□□□□ -1.13
NEDD9-216ENST00000620854 ZBTB3Q9H5J0 574 aa8.01□□□□□ -1.13
NEDD9-216ENST00000620854 LZTFL1Q9NQ48 299 aa8.01□□□□□ -1.13
NEDD9-216ENST00000620854 FANCLQ9NW38 375 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms