RNA–Protein interactions for RNA: ENST00000610489.1

SYNE1-240, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 1,754 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-240ENST00000610489 IFIT2P09913 472 aaKnown RBP12.69□□□□□ -0.38
SYNE1-240ENST00000610489 IL1R1P14778 569 aa12.69□□□□□ -0.38
SYNE1-240ENST00000610489 PHKA1P46020 1223 aa12.69□□□□□ -0.38
SYNE1-240ENST00000610489 NUCB1Q02818 461 aa12.69□□□□□ -0.38
SYNE1-240ENST00000610489 GORABQ5T7V8 394 aa12.69□□□□□ -0.38
SYNE1-240ENST00000610489 CCDC102BQ68D86 513 aa12.69□□□□□ -0.38
SYNE1-240ENST00000610489 CENPQQ7L2Z9 268 aaPredicted RBP12.69□□□□□ -0.38
SYNE1-240ENST00000610489 PODNQ7Z5L7 613 aa12.69□□□□□ -0.38
SYNE1-240ENST00000610489 ZNRF3Q9ULT6 936 aa12.69□□□□□ -0.38
SYNE1-240ENST00000610489 ZC3H4Q9UPT8 1303 aaKnown RBP12.69□□□□□ -0.38
SYNE1-240ENST00000610489 FZD9O00144 591 aa12.69□□□□□ -0.38
SYNE1-240ENST00000610489 LNPKQ9C0E8 428 aa12.69□□□□□ -0.38
SYNE1-240ENST00000610489 CHD1LQ86WJ1 897 aa12.68□□□□□ -0.38
SYNE1-240ENST00000610489 TDRD7Q8NHU6 1098 aaKnown RBP12.68□□□□□ -0.38
SYNE1-240ENST00000610489 GNL3LQ9NVN8 582 aaKnown RBP12.68□□□□□ -0.38
SYNE1-240ENST00000610489 SSUH2Q9Y2M2 353 aa12.68□□□□□ -0.38
SYNE1-240ENST00000610489 COL1A1P02452 1464 aaPredicted RBP12.67□□□□□ -0.38
SYNE1-240ENST00000610489 CCDC158Q5M9N0 1113 aa12.67□□□□□ -0.38
SYNE1-240ENST00000610489 IQSEC3Q9UPP2 1182 aaPredicted RBP12.67□□□□□ -0.38
SYNE1-240ENST00000610489 SPDYE2BA6NHP3 402 aa12.66□□□□□ -0.38
SYNE1-240ENST00000610489 SPDYE6P0CI01 402 aa12.66□□□□□ -0.38
SYNE1-240ENST00000610489 ARID4AP29374 1257 aaPredicted RBP12.66□□□□□ -0.38
SYNE1-240ENST00000610489 EIF6P56537 245 aaKnown RBP12.66□□□□□ -0.38
SYNE1-240ENST00000610489 CXCL9Q07325 125 aa12.66□□□□□ -0.38
SYNE1-240ENST00000610489 SPDYE2Q495Y8 402 aa12.66□□□□□ -0.38
SYNE1-240ENST00000610489 TTC39AQ5SRH9 613 aa12.66□□□□□ -0.38
SYNE1-240ENST00000610489 C16orf71Q8IYS4 520 aaPredicted RBP12.66□□□□□ -0.38
SYNE1-240ENST00000610489 OTUD7AQ8TE49 926 aaPredicted RBP12.66□□□□□ -0.38
SYNE1-240ENST00000610489 KCNQ5Q9NR82 932 aa12.66□□□□□ -0.38
SYNE1-240ENST00000610489 ZNF541Q9H0D2 1346 aa12.66□□□□□ -0.38
SYNE1-240ENST00000610489 MYO5AQ9Y4I1 1855 aaKnown RBP12.66□□□□□ -0.38
SYNE1-240ENST00000610489 SEMA3EO15041 775 aa12.66□□□□□ -0.38
SYNE1-240ENST00000610489 FRAT2O75474 233 aaPredicted RBP12.66□□□□□ -0.38
SYNE1-240ENST00000610489 RAD17O75943 681 aa12.66□□□□□ -0.38
SYNE1-240ENST00000610489 UQCRFS1P1P0C7P4 283 aa12.66□□□□□ -0.38
SYNE1-240ENST00000610489 RASGRF1Q13972 1273 aa12.66□□□□□ -0.38
SYNE1-240ENST00000610489 ZNF512BQ96KM6 892 aaPredicted RBP12.66□□□□□ -0.38
SYNE1-240ENST00000610489 CIZ1Q9ULV3 898 aaPredicted RBP12.66□□□□□ -0.38
SYNE1-240ENST00000610489 SALL3Q9BXA9 1300 aa12.66□□□□□ -0.38
SYNE1-240ENST00000610489 USP17L3A6NCW0 530 aa12.65□□□□□ -0.38
SYNE1-240ENST00000610489 USP17L4A6NCW7 530 aa12.65□□□□□ -0.38
SYNE1-240ENST00000610489 GTF2IP78347 998 aa12.65□□□□□ -0.38
SYNE1-240ENST00000610489 STRIP1Q5VSL9 837 aa12.65□□□□□ -0.38
SYNE1-240ENST00000610489 CIAPIN1Q6FI81 312 aa12.65□□□□□ -0.38
SYNE1-240ENST00000610489 USP17L1Q7RTZ2 530 aa12.65□□□□□ -0.38
SYNE1-240ENST00000610489 GPATCH3Q96I76 525 aa12.65□□□□□ -0.38
SYNE1-240ENST00000610489 DENND2AQ9ULE3 1009 aa12.65□□□□□ -0.38
SYNE1-240ENST00000610489 FAM205AQ6ZU69 1335 aa12.65□□□□□ -0.38
SYNE1-240ENST00000610489 PSMD14O00487 310 aa12.64□□□□□ -0.39
SYNE1-240ENST00000610489 MX1P20591 662 aa12.64□□□□□ -0.39
SYNE1-240ENST00000610489 MCAMP43121 646 aa12.64□□□□□ -0.39
SYNE1-240ENST00000610489 SCARF1Q14162 830 aa12.64□□□□□ -0.39
SYNE1-240ENST00000610489 DACT2Q5SW24 774 aa12.64□□□□□ -0.39
SYNE1-240ENST00000610489 TTLL5Q6EMB2 1281 aa12.64□□□□□ -0.39
SYNE1-240ENST00000610489 FBXW7Q969H0 707 aa12.64□□□□□ -0.39
SYNE1-240ENST00000610489 ECHDC1Q9NTX5 307 aa12.64□□□□□ -0.39
SYNE1-240ENST00000610489 JAG2Q9Y219 1238 aa12.64□□□□□ -0.39
SYNE1-240ENST00000610489 PDS5AQ29RF7 1337 aaKnown RBP12.64□□□□□ -0.39
SYNE1-240ENST00000610489 DOCK2Q92608 1830 aa12.64□□□□□ -0.39
SYNE1-240ENST00000610489 TTC41PQ6P2S7 1318 aa12.64□□□□□ -0.39
SYNE1-240ENST00000610489 CHAF1AQ13111 956 aaPredicted RBP12.64□□□□□ -0.39
SYNE1-240ENST00000610489 TNIP1Q15025 636 aa12.64□□□□□ -0.39
SYNE1-240ENST00000610489 PI16Q6UXB8 463 aa12.64□□□□□ -0.39
SYNE1-240ENST00000610489 HMG20BQ9P0W2 317 aa12.64□□□□□ -0.39
SYNE1-240ENST00000610489 MYH7P12883 1935 aa12.63□□□□□ -0.39
SYNE1-240ENST00000610489 VIL1P09327 827 aaKnown RBP12.63□□□□□ -0.39
SYNE1-240ENST00000610489 ATP5JP18859 108 aa12.63□□□□□ -0.39
SYNE1-240ENST00000610489 PDE4AP27815 886 aa12.63□□□□□ -0.39
SYNE1-240ENST00000610489 TSHZ3Q63HK5 1081 aa12.63□□□□□ -0.39
SYNE1-240ENST00000610489 GPC2Q8N158 579 aa12.63□□□□□ -0.39
SYNE1-240ENST00000610489 SPATA5Q8NB90 893 aa12.63□□□□□ -0.39
SYNE1-240ENST00000610489 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.63□□□□□ -0.39
SYNE1-240ENST00000610489 GJA3Q9Y6H8 435 aa12.63□□□□□ -0.39
SYNE1-240ENST00000610489 AK9Q5TCS8 1911 aa12.62□□□□□ -0.39
SYNE1-240ENST00000610489 SCN4AP35499 1836 aa12.62□□□□□ -0.39
SYNE1-240ENST00000610489 PDE1AP54750 535 aa12.62□□□□□ -0.39
SYNE1-240ENST00000610489 FKBP1AP62942 108 aaKnown RBP12.62□□□□□ -0.39
SYNE1-240ENST00000610489 MFSD14BQ5SR56 506 aa12.62□□□□□ -0.39
SYNE1-240ENST00000610489 RSBN1LQ6PCB5 846 aaPredicted RBP12.62□□□□□ -0.39
SYNE1-240ENST00000610489 WDR66Q8TBY9 1149 aa12.62□□□□□ -0.39
SYNE1-240ENST00000610489 TBC1D22AQ8WUA7 517 aa12.62□□□□□ -0.39
SYNE1-240ENST00000610489 SNRKQ9NRH2 765 aa12.62□□□□□ -0.39
SYNE1-240ENST00000610489 STAP2Q9UGK3 403 aa12.62□□□□□ -0.39
SYNE1-240ENST00000610489 GTF3C3Q9Y5Q9 886 aa12.62□□□□□ -0.39
SYNE1-240ENST00000610489 WDR90Q96KV7 1748 aa12.62□□□□□ -0.39
SYNE1-240ENST00000610489 MAST2Q6P0Q8 1798 aa12.62□□□□□ -0.39
SYNE1-240ENST00000610489 MYO3BQ8WXR4 1341 aa12.61□□□□□ -0.39
SYNE1-240ENST00000610489 SALL1Q9NSC2 1324 aa12.61□□□□□ -0.39
SYNE1-240ENST00000610489 GLTPD2A6NH11 291 aa12.61□□□□□ -0.39
SYNE1-240ENST00000610489 DDNO94850 711 aaPredicted RBP12.61□□□□□ -0.39
SYNE1-240ENST00000610489 DPY19L2Q6NUT2 758 aa12.61□□□□□ -0.39
SYNE1-240ENST00000610489 PLEKHM2Q8IWE5 1019 aa12.61□□□□□ -0.39
SYNE1-240ENST00000610489 CERS5Q8N5B7 392 aa12.61□□□□□ -0.39
SYNE1-240ENST00000610489 PI4K2BQ8TCG2 481 aa12.61□□□□□ -0.39
SYNE1-240ENST00000610489 MXD3Q9BW11 206 aa12.61□□□□□ -0.39
SYNE1-240ENST00000610489 AOX1Q06278 1338 aa12.61□□□□□ -0.39
SYNE1-240ENST00000610489 ERC2O15083 957 aa12.61□□□□□ -0.39
SYNE1-240ENST00000610489 GLRX3O76003 335 aaKnown RBP12.61□□□□□ -0.39
SYNE1-240ENST00000610489 ZAP70P43403 619 aa12.61□□□□□ -0.39
SYNE1-240ENST00000610489 AGBL3Q8NEM8 1001 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms