RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 JDP2Q8WYK2 163 aa17.48■□□□□ 0.39
UPF1-211ENST00000600868 ZNRF3Q9ULT6 936 aa17.48■□□□□ 0.39
UPF1-211ENST00000600868 COL4A5P29400 1685 aa17.48■□□□□ 0.39
UPF1-211ENST00000600868 GOLGB1Q14789 3259 aaKnown RBP17.48■□□□□ 0.39
UPF1-211ENST00000600868 SBF1O95248 1867 aa17.48■□□□□ 0.39
UPF1-211ENST00000600868 FAM205AQ6ZU69 1335 aa17.47■□□□□ 0.39
UPF1-211ENST00000600868 CHD4Q14839 1912 aa17.47■□□□□ 0.39
UPF1-211ENST00000600868 MYH13Q9UKX3 1938 aa17.47■□□□□ 0.39
UPF1-211ENST00000600868 PI16Q6UXB8 463 aa17.47■□□□□ 0.39
UPF1-211ENST00000600868 COL1A1P02452 1464 aaPredicted RBP17.47■□□□□ 0.39
UPF1-211ENST00000600868 CCDC88AQ3V6T2 1871 aa17.47■□□□□ 0.39
UPF1-211ENST00000600868 YDJCA8MPS7 323 aa17.46■□□□□ 0.39
UPF1-211ENST00000600868 GSPT1P15170 499 aaKnown RBP17.46■□□□□ 0.39
UPF1-211ENST00000600868 ZAP70P43403 619 aa17.46■□□□□ 0.39
UPF1-211ENST00000600868 WDR66Q8TBY9 1149 aa17.46■□□□□ 0.39
UPF1-211ENST00000600868 SNRKQ9NRH2 765 aa17.46■□□□□ 0.39
UPF1-211ENST00000600868 DICER1Q9UPY3 1922 aaKnown RBP17.46■□□□□ 0.39
UPF1-211ENST00000600868 CYP2E1P05181 493 aaPredicted RBP17.45■□□□□ 0.38
UPF1-211ENST00000600868 CHAF1AQ13111 956 aaPredicted RBP17.45■□□□□ 0.38
UPF1-211ENST00000600868 TTF1Q15361 905 aaPredicted RBP17.45■□□□□ 0.38
UPF1-211ENST00000600868 BMP2KLQ5H9B9 411 aa17.45■□□□□ 0.38
UPF1-211ENST00000600868 TTLL5Q6EMB2 1281 aa17.45■□□□□ 0.38
UPF1-211ENST00000600868 DNAJC2Q99543 621 aaKnown RBP17.45■□□□□ 0.38
UPF1-211ENST00000600868 PAG1Q9NWQ8 432 aa17.45■□□□□ 0.38
UPF1-211ENST00000600868 SALL1Q9NSC2 1324 aa17.45■□□□□ 0.38
UPF1-211ENST00000600868 SCN9AQ15858 1988 aa17.44■□□□□ 0.38
UPF1-211ENST00000600868 USP17L3A6NCW0 530 aa17.44■□□□□ 0.38
UPF1-211ENST00000600868 USP17L4A6NCW7 530 aa17.44■□□□□ 0.38
UPF1-211ENST00000600868 DCAF8L1A6NGE4 600 aa17.44■□□□□ 0.38
UPF1-211ENST00000600868 FZD9O00144 591 aa17.44■□□□□ 0.38
UPF1-211ENST00000600868 GOLIM4O00461 696 aa17.44■□□□□ 0.38
UPF1-211ENST00000600868 FKBP1AP62942 108 aaKnown RBP17.44■□□□□ 0.38
UPF1-211ENST00000600868 GTF2IP78347 998 aa17.44■□□□□ 0.38
UPF1-211ENST00000600868 STRIP1Q5VSL9 837 aa17.44■□□□□ 0.38
UPF1-211ENST00000600868 USP17L1Q7RTZ2 530 aa17.44■□□□□ 0.38
UPF1-211ENST00000600868 ZGPATQ8N5A5 531 aaKnown RBP17.44■□□□□ 0.38
UPF1-211ENST00000600868 TBC1D22AQ8WUA7 517 aa17.44■□□□□ 0.38
UPF1-211ENST00000600868 EVI5LQ96CN4 794 aa17.44■□□□□ 0.38
UPF1-211ENST00000600868 KCNQ5Q9NR82 932 aa17.44■□□□□ 0.38
UPF1-211ENST00000600868 NDUFB9Q9Y6M9 179 aa17.44■□□□□ 0.38
UPF1-211ENST00000600868 PSME4Q14997 1843 aa17.43■□□□□ 0.38
UPF1-211ENST00000600868 TRIM6-TRIM34B2RNG4 842 aa17.43■□□□□ 0.38
UPF1-211ENST00000600868 IGSF3O75054 1194 aa17.43■□□□□ 0.38
UPF1-211ENST00000600868 MAP4K4O95819 1239 aaPredicted RBP17.43■□□□□ 0.38
UPF1-211ENST00000600868 CNTROBQ8N137 903 aa17.43■□□□□ 0.38
UPF1-211ENST00000600868 EDC3Q96F86 508 aaKnown RBP17.43■□□□□ 0.38
UPF1-211ENST00000600868 ANTXR1Q9H6X2 564 aa17.43■□□□□ 0.38
UPF1-211ENST00000600868 SDSP20132 328 aa17.42■□□□□ 0.38
UPF1-211ENST00000600868 CXCL9Q07325 125 aa17.42■□□□□ 0.38
UPF1-211ENST00000600868 DACT2Q5SW24 774 aa17.42■□□□□ 0.38
UPF1-211ENST00000600868 C9orf131Q5VYM1 1079 aa17.42■□□□□ 0.38
UPF1-211ENST00000600868 TICAM2Q86XR7 235 aa17.42■□□□□ 0.38
UPF1-211ENST00000600868 KBTBD3Q8NAB2 608 aa17.42■□□□□ 0.38
UPF1-211ENST00000600868 RNF181Q9P0P0 153 aa17.42■□□□□ 0.38
UPF1-211ENST00000600868 JAG2Q9Y219 1238 aa17.42■□□□□ 0.38
UPF1-211ENST00000600868 SUGT1Q9Y2Z0 365 aa17.42■□□□□ 0.38
UPF1-211ENST00000600868 ZNF646O15015 1829 aaPredicted RBP17.42■□□□□ 0.38
UPF1-211ENST00000600868 RAD17O75943 681 aa17.41■□□□□ 0.38
UPF1-211ENST00000600868 VIL1P09327 827 aaKnown RBP17.41■□□□□ 0.38
UPF1-211ENST00000600868 EIF6P56537 245 aaKnown RBP17.41■□□□□ 0.38
UPF1-211ENST00000600868 MFSD14BQ5SR56 506 aa17.41■□□□□ 0.38
UPF1-211ENST00000600868 SPTY2D1Q68D10 685 aaPredicted RBP17.41■□□□□ 0.38
UPF1-211ENST00000600868 CIAPIN1Q6FI81 312 aa17.41■□□□□ 0.38
UPF1-211ENST00000600868 TBC1D9Q6ZT07 1266 aa17.41■□□□□ 0.38
UPF1-211ENST00000600868 RILPL2Q969X0 211 aa17.41■□□□□ 0.38
UPF1-211ENST00000600868 PIH1D3Q9NQM4 214 aaKnown RBP17.41■□□□□ 0.38
UPF1-211ENST00000600868 PSMD14O00487 310 aa17.4■□□□□ 0.38
UPF1-211ENST00000600868 TNIP1Q15025 636 aa17.4■□□□□ 0.38
UPF1-211ENST00000600868 FBXW7Q969H0 707 aa17.4■□□□□ 0.38
UPF1-211ENST00000600868 ABCF2Q9UG63 623 aa17.4■□□□□ 0.38
UPF1-211ENST00000600868 DOCK2Q92608 1830 aa17.4■□□□□ 0.38
UPF1-211ENST00000600868 TMED8Q6PL24 325 aaPredicted RBP17.39■□□□□ 0.37
UPF1-211ENST00000600868 ERICH6Q7L0X2 663 aa17.39■□□□□ 0.37
UPF1-211ENST00000600868 CERS5Q8N5B7 392 aa17.39■□□□□ 0.37
UPF1-211ENST00000600868 FSD1Q9BTV5 496 aa17.39■□□□□ 0.37
UPF1-211ENST00000600868 LRP2BPQ9P2M1 347 aa17.39■□□□□ 0.37
UPF1-211ENST00000600868 MYO3BQ8WXR4 1341 aa17.39■□□□□ 0.37
UPF1-211ENST00000600868 ZC3H4Q9UPT8 1303 aaKnown RBP17.39■□□□□ 0.37
UPF1-211ENST00000600868 RFX7Q2KHR2 1363 aa17.39■□□□□ 0.37
UPF1-211ENST00000600868 AK9Q5TCS8 1911 aa17.39■□□□□ 0.37
UPF1-211ENST00000600868 TIAM2Q8IVF5 1701 aa17.38■□□□□ 0.37
UPF1-211ENST00000600868 IDH1O75874 414 aaKnown RBP17.38■□□□□ 0.37
UPF1-211ENST00000600868 LDHBP07195 334 aaKnown RBP17.38■□□□□ 0.37
UPF1-211ENST00000600868 MAP3K12Q12852 859 aa17.38■□□□□ 0.37
UPF1-211ENST00000600868 LRRFIP1Q32MZ4 808 aaKnown RBP17.38■□□□□ 0.37
UPF1-211ENST00000600868 RSBN1LQ6PCB5 846 aaPredicted RBP17.38■□□□□ 0.37
UPF1-211ENST00000600868 MXD3Q9BW11 206 aa17.38■□□□□ 0.37
UPF1-211ENST00000600868 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.38■□□□□ 0.378e-7■■■□□ 15.5
UPF1-211ENST00000600868 MYO5AQ9Y4I1 1855 aaKnown RBP17.37■□□□□ 0.37
UPF1-211ENST00000600868 PRDX5P30044 214 aa17.37■□□□□ 0.37
UPF1-211ENST00000600868 GRIK5Q16478 980 aa17.37■□□□□ 0.37
UPF1-211ENST00000600868 ZSCAN25Q6NSZ9 544 aa17.37■□□□□ 0.37
UPF1-211ENST00000600868 AGBL3Q8NEM8 1001 aa17.37■□□□□ 0.37
UPF1-211ENST00000600868 GMLQ99445 158 aa17.37■□□□□ 0.37
UPF1-211ENST00000600868 RAI14Q9P0K7 980 aa17.37■□□□□ 0.37
UPF1-211ENST00000600868 ZNF541Q9H0D2 1346 aa17.37■□□□□ 0.37
UPF1-211ENST00000600868 ZFYP08048 801 aaPredicted RBP17.36■□□□□ 0.37
UPF1-211ENST00000600868 RPS12P25398 132 aaKnown RBP17.36■□□□□ 0.37
UPF1-211ENST00000600868 MYH7P12883 1935 aa17.35■□□□□ 0.37
UPF1-211ENST00000600868 HIP1O00291 1037 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 118.3 ms