RNA–Protein interactions for RNA: ENST00000594661.5

PNKP-204, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 2

Gene PNKP, Length 2,111 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-204ENST00000594661 TAF5LO75529 589 aa18.13■□□□□ 0.49
PNKP-204ENST00000594661 CHAF1AQ13111 956 aaPredicted RBP18.13■□□□□ 0.49
PNKP-204ENST00000594661 USPL1Q5W0Q7 1092 aa18.13■□□□□ 0.49
PNKP-204ENST00000594661 CREB3L3Q68CJ9 461 aa18.13■□□□□ 0.49
PNKP-204ENST00000594661 PDE8BO95263 885 aa18.12■□□□□ 0.49
PNKP-204ENST00000594661 ADCK5Q3MIX3 580 aa18.12■□□□□ 0.49
PNKP-204ENST00000594661 CCDC152Q4G0S7 254 aa18.12■□□□□ 0.49
PNKP-204ENST00000594661 TBC1D9BQ66K14 1250 aa18.12■□□□□ 0.49
PNKP-204ENST00000594661 BICDL1Q6ZP65 573 aa18.12■□□□□ 0.49
PNKP-204ENST00000594661 TTC14Q96N46 770 aa18.12■□□□□ 0.49
PNKP-204ENST00000594661 NARFQ9UHQ1 456 aa18.12■□□□□ 0.49
PNKP-204ENST00000594661 COL4A1P02462 1669 aa18.12■□□□□ 0.49
PNKP-204ENST00000594661 CPA1P15085 419 aa18.11■□□□□ 0.49
PNKP-204ENST00000594661 CASTP20810 708 aaKnown RBP18.11■□□□□ 0.49
PNKP-204ENST00000594661 FKBP4Q02790 459 aaKnown RBP eCLIP18.11■□□□□ 0.49
PNKP-204ENST00000594661 ERFEQ4G0M1 354 aa18.11■□□□□ 0.49
PNKP-204ENST00000594661 HELBQ8NG08 1087 aaPredicted RBP18.11■□□□□ 0.49
PNKP-204ENST00000594661 RTL9Q8NET4 1388 aa18.11■□□□□ 0.49
PNKP-204ENST00000594661 MCMDC2Q4G0Z9 681 aa18.11■□□□□ 0.49
PNKP-204ENST00000594661 FOXD4L5Q5VV16 416 aaPredicted RBP18.11■□□□□ 0.49
PNKP-204ENST00000594661 FAM184AQ8NB25 1140 aa18.11■□□□□ 0.49
PNKP-204ENST00000594661 FOXD4L4Q8WXT5 416 aaPredicted RBP18.11■□□□□ 0.49
PNKP-204ENST00000594661 C4BP0C0L5 1744 aa18.11■□□□□ 0.49
PNKP-204ENST00000594661 ABCC12Q96J65 1359 aa18.1■□□□□ 0.49
PNKP-204ENST00000594661 SLC27A2O14975 620 aa18.1■□□□□ 0.49
PNKP-204ENST00000594661 AK2P54819 239 aa18.1■□□□□ 0.49
PNKP-204ENST00000594661 NCBP1Q09161 790 aaKnown RBP18.1■□□□□ 0.49
PNKP-204ENST00000594661 PI16Q6UXB8 463 aa18.1■□□□□ 0.49
PNKP-204ENST00000594661 C3orf67Q6ZVT6 689 aa18.1■□□□□ 0.49
PNKP-204ENST00000594661 JAKMIP1Q96N16 626 aaKnown RBP18.1■□□□□ 0.49
PNKP-204ENST00000594661 NSFL1CQ9UNZ2 370 aaKnown RBP18.1■□□□□ 0.49
PNKP-204ENST00000594661 MROH5Q6ZUA9 1318 aa18.1■□□□□ 0.49
PNKP-204ENST00000594661 RGL2O15211 777 aa18.1■□□□□ 0.49
PNKP-204ENST00000594661 HSP90B1P14625 803 aaKnown RBP18.1■□□□□ 0.49
PNKP-204ENST00000594661 CREBRFQ8IUR6 639 aa18.1■□□□□ 0.49
PNKP-204ENST00000594661 C17orf53Q8N3J3 647 aaPredicted RBP18.1■□□□□ 0.49
PNKP-204ENST00000594661 RTCBQ9Y3I0 505 aaKnown RBP18.1■□□□□ 0.49
PNKP-204ENST00000594661 CASZ1Q86V15 1759 aa18.09■□□□□ 0.49
PNKP-204ENST00000594661 ZAP70P43403 619 aa18.09■□□□□ 0.49
PNKP-204ENST00000594661 SECISBP2LQ93073 1101 aaKnown RBP18.09■□□□□ 0.49
PNKP-204ENST00000594661 MPHOSPH8Q99549 860 aa18.09■□□□□ 0.49
PNKP-204ENST00000594661 TTC12Q9H892 705 aaPredicted RBP18.09■□□□□ 0.49
PNKP-204ENST00000594661 TAF6LQ9Y6J9 622 aa18.09■□□□□ 0.49
PNKP-204ENST00000594661 BRWD3Q6RI45 1802 aa18.09■□□□□ 0.49
PNKP-204ENST00000594661 ARAP2Q8WZ64 1704 aa18.09■□□□□ 0.49
PNKP-204ENST00000594661 ZKSCAN1P17029 563 aaPredicted RBP18.08■□□□□ 0.49
PNKP-204ENST00000594661 FGFR2P21802 821 aa18.08■□□□□ 0.49
PNKP-204ENST00000594661 MCAMP43121 646 aa18.08■□□□□ 0.49
PNKP-204ENST00000594661 PUM3Q15397 648 aaKnown RBP18.08■□□□□ 0.49
PNKP-204ENST00000594661 ZMYM1Q5SVZ6 1142 aa18.08■□□□□ 0.49
PNKP-204ENST00000594661 ARHGEF1Q92888 912 aaKnown RBP18.08■□□□□ 0.49
PNKP-204ENST00000594661 LRRC4BQ9NT99 713 aa18.08■□□□□ 0.49
PNKP-204ENST00000594661 LIMCH1Q9UPQ0 1083 aa18.08■□□□□ 0.49
PNKP-204ENST00000594661 C4AP0C0L4 1744 aa18.08■□□□□ 0.48
PNKP-204ENST00000594661 COL24A1Q17RW2 1714 aa18.08■□□□□ 0.48
PNKP-204ENST00000594661 SNAP23O00161 211 aa18.08■□□□□ 0.48
PNKP-204ENST00000594661 ZPR1O75312 459 aa18.08■□□□□ 0.48
PNKP-204ENST00000594661 BRD1O95696 1058 aa18.08■□□□□ 0.48
PNKP-204ENST00000594661 RUFY3Q7L099 469 aa18.08■□□□□ 0.48
PNKP-204ENST00000594661 KIAA1524Q8TCG1 905 aa18.08■□□□□ 0.48
PNKP-204ENST00000594661 LARP6Q9BRS8 491 aaKnown RBP18.08■□□□□ 0.48
PNKP-204ENST00000594661 TM6SF1Q9BZW5 370 aa18.08■□□□□ 0.48
PNKP-204ENST00000594661 HELLSQ9NRZ9 838 aa18.08■□□□□ 0.48
PNKP-204ENST00000594661 AKAP11Q9UKA4 1901 aa18.08■□□□□ 0.48
PNKP-204ENST00000594661 RPAP1Q9BWH6 1393 aaPredicted RBP18.08■□□□□ 0.48
PNKP-204ENST00000594661 RNF113AO15541 343 aaKnown RBP18.07■□□□□ 0.48
PNKP-204ENST00000594661 COL9A3Q14050 684 aaPredicted RBP18.07■□□□□ 0.48
PNKP-204ENST00000594661 TICAM2Q86XR7 235 aa18.07■□□□□ 0.48
PNKP-204ENST00000594661 YY1AP1Q9H869 796 aa18.07■□□□□ 0.48
PNKP-204ENST00000594661 ZSWIM6Q9HCJ5 1215 aa18.07■□□□□ 0.48
PNKP-204ENST00000594661 CYP46A1Q9Y6A2 500 aa18.07■□□□□ 0.48
PNKP-204ENST00000594661 IGHMBP2P38935 993 aaKnown RBP18.07■□□□□ 0.48
PNKP-204ENST00000594661 PHKA1P46020 1223 aa18.07■□□□□ 0.48
PNKP-204ENST00000594661 LPIN2Q92539 896 aa18.07■□□□□ 0.48
PNKP-204ENST00000594661 PDRG1Q9NUG6 133 aa18.07■□□□□ 0.48
PNKP-204ENST00000594661 PHF14O94880 888 aa18.06■□□□□ 0.48
PNKP-204ENST00000594661 CCDC102BQ68D86 513 aa18.06■□□□□ 0.48
PNKP-204ENST00000594661 SYAP1Q96A49 352 aaPredicted RBP18.06■□□□□ 0.48
PNKP-204ENST00000594661 MAST3O60307 1309 aa18.06■□□□□ 0.48
PNKP-204ENST00000594661 VPS53Q5VIR6 699 aa18.05■□□□□ 0.48
PNKP-204ENST00000594661 RNF20Q5VTR2 975 aa18.05■□□□□ 0.48
PNKP-204ENST00000594661 FAM196AQ6ZSG2 479 aa18.05■□□□□ 0.48
PNKP-204ENST00000594661 CHAMP1Q96JM3 812 aa18.05■□□□□ 0.48
PNKP-204ENST00000594661 ZNF512BQ96KM6 892 aaPredicted RBP18.05■□□□□ 0.48
PNKP-204ENST00000594661 SETDB2Q96T68 719 aa18.05■□□□□ 0.48
PNKP-204ENST00000594661 TAF1P21675 1872 aa18.05■□□□□ 0.48
PNKP-204ENST00000594661 M0R2C6 588 aa18.05■□□□□ 0.48
PNKP-204ENST00000594661 SF3B3Q15393 1217 aaKnown RBP18.05■□□□□ 0.48
PNKP-204ENST00000594661 KRT27Q7Z3Y8 459 aa18.05■□□□□ 0.48
PNKP-204ENST00000594661 MAPK8IP2Q13387 824 aaPredicted RBP18.04■□□□□ 0.48
PNKP-204ENST00000594661 OSBP2Q969R2 916 aa18.04■□□□□ 0.48
PNKP-204ENST00000594661 TRIM34Q9BYJ4 488 aa18.04■□□□□ 0.48
PNKP-204ENST00000594661 FAM53CQ9NYF3 392 aa18.04■□□□□ 0.48
PNKP-204ENST00000594661 HMG20BQ9P0W2 317 aa18.04■□□□□ 0.48
PNKP-204ENST00000594661 SLC5A1P13866 664 aa18.04■□□□□ 0.48
PNKP-204ENST00000594661 ARID4AP29374 1257 aaPredicted RBP18.04■□□□□ 0.48
PNKP-204ENST00000594661 MMP14P50281 582 aa18.04■□□□□ 0.48
PNKP-204ENST00000594661 SLC10A5Q5PT55 438 aa18.04■□□□□ 0.48
PNKP-204ENST00000594661 KIF18AQ8NI77 898 aa18.04■□□□□ 0.48
PNKP-204ENST00000594661 CDC5LQ99459 802 aaKnown RBP18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms