RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 A0A1W2PPC1 479 aa14.25□□□□□ -0.13
ZNF540-209ENST00000590588 WDHD1O75717 1129 aaPredicted RBP14.25□□□□□ -0.13
ZNF540-209ENST00000590588 GNRH1P01148 92 aa14.25□□□□□ -0.13
ZNF540-209ENST00000590588 PRMT2P55345 433 aa14.25□□□□□ -0.13
ZNF540-209ENST00000590588 GTF2IP78347 998 aa14.25□□□□□ -0.13
ZNF540-209ENST00000590588 GOLGA2Q08379 1002 aa14.25□□□□□ -0.13
ZNF540-209ENST00000590588 TXNRD3Q86VQ6 643 aa14.25□□□□□ -0.13
ZNF540-209ENST00000590588 OPTNQ96CV9 577 aa14.25□□□□□ -0.13
ZNF540-209ENST00000590588 MYD88Q99836 296 aa14.25□□□□□ -0.13
ZNF540-209ENST00000590588 TMPOP42166 694 aaKnown RBP14.24□□□□□ -0.13
ZNF540-209ENST00000590588 GTF2A2P52657 109 aa14.24□□□□□ -0.13
ZNF540-209ENST00000590588 JARID2Q92833 1246 aaPredicted RBP14.24□□□□□ -0.13
ZNF540-209ENST00000590588 ELP3Q9H9T3 547 aa14.24□□□□□ -0.13
ZNF540-209ENST00000590588 CWC25Q9NXE8 425 aaPredicted RBP14.24□□□□□ -0.13
ZNF540-209ENST00000590588 LAS1LQ9Y4W2 734 aaKnown RBP14.24□□□□□ -0.13
ZNF540-209ENST00000590588 SSC5DA1L4H1 1573 aa14.24□□□□□ -0.13
ZNF540-209ENST00000590588 LAMB1P07942 1786 aa14.24□□□□□ -0.13
ZNF540-209ENST00000590588 BRI3BPQ8WY22 251 aa14.23□□□□□ -0.13
ZNF540-209ENST00000590588 CCL15-CCL14A0A0B4J2E2 113 aa14.22□□□□□ -0.13
ZNF540-209ENST00000590588 CLRN2A0PK11 232 aa14.22□□□□□ -0.13
ZNF540-209ENST00000590588 CTSWP56202 376 aa14.22□□□□□ -0.13
ZNF540-209ENST00000590588 LACTBP83111 547 aaPredicted RBP14.22□□□□□ -0.13
ZNF540-209ENST00000590588 RASA3Q14644 834 aa14.22□□□□□ -0.13
ZNF540-209ENST00000590588 MTFR1Q15390 333 aa14.22□□□□□ -0.13
ZNF540-209ENST00000590588 CCL15Q16663 113 aa14.22□□□□□ -0.13
ZNF540-209ENST00000590588 TTLL11Q8NHH1 800 aa14.22□□□□□ -0.13
ZNF540-209ENST00000590588 SHISA4Q96DD7 197 aa14.22□□□□□ -0.13
ZNF540-209ENST00000590588 PRMT6Q96LA8 375 aaPredicted RBP14.22□□□□□ -0.13
ZNF540-209ENST00000590588 VEZTQ9HBM0 779 aa14.22□□□□□ -0.13
ZNF540-209ENST00000590588 LAMA3Q16787 3333 aa14.22□□□□□ -0.13
ZNF540-209ENST00000590588 TLR2O60603 784 aa14.21□□□□□ -0.13
ZNF540-209ENST00000590588 GJA8P48165 433 aa14.21□□□□□ -0.13
ZNF540-209ENST00000590588 CFAP100Q494V2 611 aa14.21□□□□□ -0.13
ZNF540-209ENST00000590588 UBE2Q1Q7Z7E8 422 aa14.21□□□□□ -0.13
ZNF540-209ENST00000590588 FAM43AQ8N2R8 423 aa14.21□□□□□ -0.13
ZNF540-209ENST00000590588 CNKSR2Q8WXI2 1034 aa14.21□□□□□ -0.13
ZNF540-209ENST00000590588 ARHGAP39Q9C0H5 1083 aa14.21□□□□□ -0.13
ZNF540-209ENST00000590588 ANKRD2Q9GZV1 360 aa14.21□□□□□ -0.13
ZNF540-209ENST00000590588 CD209Q9NNX6 404 aa14.21□□□□□ -0.13
ZNF540-209ENST00000590588 SPDYE2BA6NHP3 402 aa14.2□□□□□ -0.14
ZNF540-209ENST00000590588 ZBTB7BO15156 539 aaPredicted RBP14.2□□□□□ -0.14
ZNF540-209ENST00000590588 GJB1P08034 283 aa14.2□□□□□ -0.14
ZNF540-209ENST00000590588 SPDYE6P0CI01 402 aa14.2□□□□□ -0.14
ZNF540-209ENST00000590588 HOXD10P28358 340 aa14.2□□□□□ -0.14
ZNF540-209ENST00000590588 IGHMBP2P38935 993 aaKnown RBP14.2□□□□□ -0.14
ZNF540-209ENST00000590588 DUSP27Q5VZP5 1158 aa14.2□□□□□ -0.14
ZNF540-209ENST00000590588 LRCH3Q96II8 777 aa14.2□□□□□ -0.14
ZNF540-209ENST00000590588 GREM2Q9H772 168 aa14.2□□□□□ -0.14
ZNF540-209ENST00000590588 PHAXQ9H814 394 aaKnown RBP14.2□□□□□ -0.14
ZNF540-209ENST00000590588 PCDHAC2Q9Y5I4 1007 aa14.2□□□□□ -0.14
ZNF540-209ENST00000590588 SOX1O00570 391 aaPredicted RBP14.19□□□□□ -0.14
ZNF540-209ENST00000590588 MAP3K9P80192 1104 aa14.19□□□□□ -0.14
ZNF540-209ENST00000590588 TNFAIP1Q13829 316 aa14.19□□□□□ -0.14
ZNF540-209ENST00000590588 NEUROD2Q15784 382 aa14.19□□□□□ -0.14
ZNF540-209ENST00000590588 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.19□□□□□ -0.14
ZNF540-209ENST00000590588 CERS5Q8N5B7 392 aa14.19□□□□□ -0.14
ZNF540-209ENST00000590588 HELBQ8NG08 1087 aaPredicted RBP14.19□□□□□ -0.14
ZNF540-209ENST00000590588 METTL22Q9BUU2 404 aaPredicted RBP14.19□□□□□ -0.14
ZNF540-209ENST00000590588 ZCCHC17Q9NP64 241 aaKnown RBP14.19□□□□□ -0.14
ZNF540-209ENST00000590588 ZNF646O15015 1829 aaPredicted RBP14.19□□□□□ -0.14
ZNF540-209ENST00000590588 F8W031 263 aaPredicted RBP14.18□□□□□ -0.14
ZNF540-209ENST00000590588 KLRK1P26718 216 aa14.18□□□□□ -0.14
ZNF540-209ENST00000590588 KCNJ4P48050 445 aa14.18□□□□□ -0.14
ZNF540-209ENST00000590588 RBM5P52756 815 aaKnown RBP eCLIP14.18□□□□□ -0.14
ZNF540-209ENST00000590588 FKBP1AP62942 108 aaKnown RBP14.18□□□□□ -0.14
ZNF540-209ENST00000590588 GPR153Q6NV75 609 aa14.18□□□□□ -0.14
ZNF540-209ENST00000590588 SRRDQ9UH36 339 aa14.18□□□□□ -0.14
ZNF540-209ENST00000590588 CSADQ9Y600 493 aa14.18□□□□□ -0.14
ZNF540-209ENST00000590588 EVI5O60447 810 aa14.17□□□□□ -0.14
ZNF540-209ENST00000590588 DDX58O95786 925 aaKnown RBP14.17□□□□□ -0.14
ZNF540-209ENST00000590588 CETPP11597 493 aa14.17□□□□□ -0.14
ZNF540-209ENST00000590588 GRK4P32298 578 aa14.17□□□□□ -0.14
ZNF540-209ENST00000590588 VGLL4Q14135 290 aa14.17□□□□□ -0.14
ZNF540-209ENST00000590588 RAET1EQ8TD07 263 aa14.17□□□□□ -0.14
ZNF540-209ENST00000590588 TRIM47Q96LD4 638 aa14.17□□□□□ -0.14
ZNF540-209ENST00000590588 MPHOSPH8Q99549 860 aa14.17□□□□□ -0.14
ZNF540-209ENST00000590588 RNF208Q9H0X6 261 aa14.17□□□□□ -0.14
ZNF540-209ENST00000590588 RIPOR2Q9Y4F9 1068 aa14.17□□□□□ -0.14
ZNF540-209ENST00000590588 CUL9Q8IWT3 2517 aa14.17□□□□□ -0.14
ZNF540-209ENST00000590588 CCL5P13501 91 aa14.16□□□□□ -0.14
ZNF540-209ENST00000590588 PSMC4P43686 418 aa14.16□□□□□ -0.14
ZNF540-209ENST00000590588 UBXN2AP68543 259 aa14.16□□□□□ -0.14
ZNF540-209ENST00000590588 BIN2Q9UBW5 565 aaPredicted RBP14.16□□□□□ -0.14
ZNF540-209ENST00000590588 STAP2Q9UGK3 403 aa14.16□□□□□ -0.14
ZNF540-209ENST00000590588 BTBD19C9JJ37 291 aa14.15□□□□□ -0.14
ZNF540-209ENST00000590588 FARP2O94887 1054 aaPredicted RBP14.15□□□□□ -0.14
ZNF540-209ENST00000590588 CAPN2P17655 700 aa14.15□□□□□ -0.14
ZNF540-209ENST00000590588 C17orf99Q6UX52 265 aa14.15□□□□□ -0.14
ZNF540-209ENST00000590588 DEFB123Q8N688 67 aa14.15□□□□□ -0.14
ZNF540-209ENST00000590588 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.15□□□□□ -0.14
ZNF540-209ENST00000590588 ZNF70Q9UC06 446 aaPredicted RBP14.15□□□□□ -0.14
ZNF540-209ENST00000590588 STXBP5LQ9Y2K9 1186 aa14.15□□□□□ -0.14
ZNF540-209ENST00000590588 SPDYE5A6NIY4 337 aa14.14□□□□□ -0.15
ZNF540-209ENST00000590588 ECM2O94769 699 aaPredicted RBP14.14□□□□□ -0.15
ZNF540-209ENST00000590588 FMNL1O95466 1100 aaPredicted RBP14.14□□□□□ -0.15
ZNF540-209ENST00000590588 IL1R1P14778 569 aa14.14□□□□□ -0.15
ZNF540-209ENST00000590588 CHRNDQ07001 517 aa14.14□□□□□ -0.15
ZNF540-209ENST00000590588 SNAPC2Q13487 334 aa14.14□□□□□ -0.15
ZNF540-209ENST00000590588 SPDYE2Q495Y8 402 aa14.14□□□□□ -0.15
ZNF540-209ENST00000590588 C15orf52Q6ZUT6 534 aaKnown RBP14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms