RNA–Protein interactions for RNA: ENST00000588131.1

VMP1-207, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-207ENST00000588131 CASC1Q6TDU7 716 aa13.7□□□□□ -0.22
VMP1-207ENST00000588131 NLGN2Q8NFZ4 835 aa13.7□□□□□ -0.22
VMP1-207ENST00000588131 ESYT1Q9BSJ8 1104 aa13.7□□□□□ -0.22
VMP1-207ENST00000588131 MYH7P12883 1935 aa13.69□□□□□ -0.22
VMP1-207ENST00000588131 SEMA3EO15041 775 aa13.69□□□□□ -0.22
VMP1-207ENST00000588131 NMIQ13287 307 aaPredicted RBP13.69□□□□□ -0.22
VMP1-207ENST00000588131 SLFNL1Q499Z3 407 aa13.69□□□□□ -0.22
VMP1-207ENST00000588131 CWC27Q6UX04 472 aaKnown RBP13.69□□□□□ -0.22
VMP1-207ENST00000588131 ZNF804AQ7Z570 1209 aa13.69□□□□□ -0.22
VMP1-207ENST00000588131 TDRD7Q8NHU6 1098 aaKnown RBP13.69□□□□□ -0.22
VMP1-207ENST00000588131 FAM227BQ96M60 508 aa13.69□□□□□ -0.22
VMP1-207ENST00000588131 DIAPH3Q9NSV4 1193 aa13.69□□□□□ -0.22
VMP1-207ENST00000588131 DENND2AQ9ULE3 1009 aa13.69□□□□□ -0.22
VMP1-207ENST00000588131 A0A0D9SFI3 127 aa13.68□□□□□ -0.22
VMP1-207ENST00000588131 ZBTB22O15209 634 aa13.68□□□□□ -0.22
VMP1-207ENST00000588131 CAPN15O75808 1086 aa13.68□□□□□ -0.22
VMP1-207ENST00000588131 CCDC93Q567U6 631 aa13.68□□□□□ -0.22
VMP1-207ENST00000588131 DALRD3Q5D0E6 543 aaKnown RBP13.68□□□□□ -0.22
VMP1-207ENST00000588131 RTFDC1Q9BY42 306 aaPredicted RBP13.68□□□□□ -0.22
VMP1-207ENST00000588131 CD209Q9NNX6 404 aa13.68□□□□□ -0.22
VMP1-207ENST00000588131 PDS5AQ29RF7 1337 aaKnown RBP13.67□□□□□ -0.22
VMP1-207ENST00000588131 HIP1O00291 1037 aa13.67□□□□□ -0.22
VMP1-207ENST00000588131 SGSM2O43147 1006 aa13.67□□□□□ -0.22
VMP1-207ENST00000588131 FRAT2O75474 233 aaPredicted RBP13.67□□□□□ -0.22
VMP1-207ENST00000588131 IL1R1P14778 569 aa13.67□□□□□ -0.22
VMP1-207ENST00000588131 CHAF1AQ13111 956 aaPredicted RBP13.67□□□□□ -0.22
VMP1-207ENST00000588131 TTF1Q15361 905 aaPredicted RBP13.67□□□□□ -0.22
VMP1-207ENST00000588131 EYA3Q99504 573 aa13.67□□□□□ -0.22
VMP1-207ENST00000588131 ZC3H12CQ9C0D7 883 aaKnown RBP13.67□□□□□ -0.22
VMP1-207ENST00000588131 JAG2Q9Y219 1238 aa13.67□□□□□ -0.22
VMP1-207ENST00000588131 RNF113AO15541 343 aaKnown RBP13.66□□□□□ -0.22
VMP1-207ENST00000588131 IDH1O75874 414 aaKnown RBP13.66□□□□□ -0.22
VMP1-207ENST00000588131 DOK7Q18PE1 504 aa13.66□□□□□ -0.22
VMP1-207ENST00000588131 WASHC4Q2M389 1173 aa13.66□□□□□ -0.22
VMP1-207ENST00000588131 POTEHQ6S545 545 aa13.66□□□□□ -0.22
VMP1-207ENST00000588131 SEC62Q99442 399 aaKnown RBP13.66□□□□□ -0.22
VMP1-207ENST00000588131 FHDC1Q9C0D6 1143 aaPredicted RBP13.66□□□□□ -0.22
VMP1-207ENST00000588131 COA1Q9GZY4 146 aa13.66□□□□□ -0.22
VMP1-207ENST00000588131 CHD4Q14839 1912 aa13.66□□□□□ -0.22
VMP1-207ENST00000588131 MAST2Q6P0Q8 1798 aa13.66□□□□□ -0.22
VMP1-207ENST00000588131 FER1L6Q2WGJ9 1857 aa13.65□□□□□ -0.22
VMP1-207ENST00000588131 ARFGEF1Q9Y6D6 1849 aa13.65□□□□□ -0.22
VMP1-207ENST00000588131 ADD2P35612 726 aa13.65□□□□□ -0.22
VMP1-207ENST00000588131 AOC3Q16853 763 aa13.65□□□□□ -0.22
VMP1-207ENST00000588131 GRIPAP1Q4V328 841 aa13.65□□□□□ -0.22
VMP1-207ENST00000588131 ZMYM1Q5SVZ6 1142 aa13.65□□□□□ -0.22
VMP1-207ENST00000588131 TICAM2Q86XR7 235 aa13.65□□□□□ -0.22
VMP1-207ENST00000588131 RTKN2Q8IZC4 609 aa13.65□□□□□ -0.22
VMP1-207ENST00000588131 BCS1LQ9Y276 419 aa13.65□□□□□ -0.22
VMP1-207ENST00000588131 RAD50Q92878 1312 aa13.64□□□□□ -0.23
VMP1-207ENST00000588131 ZNF646O15015 1829 aaPredicted RBP13.64□□□□□ -0.23
VMP1-207ENST00000588131 COL4A5P29400 1685 aa13.64□□□□□ -0.23
VMP1-207ENST00000588131 TCRBV5S4A2TA0A5A2 114 aa13.64□□□□□ -0.23
VMP1-207ENST00000588131 ZFYP08048 801 aaPredicted RBP13.64□□□□□ -0.23
VMP1-207ENST00000588131 PDE6AP16499 860 aa13.64□□□□□ -0.23
VMP1-207ENST00000588131 KIAA2012Q0VF49 1180 aa13.64□□□□□ -0.23
VMP1-207ENST00000588131 SLC9C2Q5TAH2 1124 aa13.64□□□□□ -0.23
VMP1-207ENST00000588131 SOGA3Q5TF21 947 aa13.64□□□□□ -0.23
VMP1-207ENST00000588131 CCDC129Q6ZRS4 1044 aa13.64□□□□□ -0.23
VMP1-207ENST00000588131 ZNF589Q86UQ0 364 aaPredicted RBP13.64□□□□□ -0.23
VMP1-207ENST00000588131 SUPT20HQ8NEM7 779 aa13.64□□□□□ -0.23
VMP1-207ENST00000588131 RUFY2Q8WXA3 655 aa13.64□□□□□ -0.23
VMP1-207ENST00000588131 PSMD1Q99460 953 aa13.64□□□□□ -0.23
VMP1-207ENST00000588131 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.64□□□□□ -0.23
VMP1-207ENST00000588131 DBNDD1Q9H9R9 158 aa13.64□□□□□ -0.23
VMP1-207ENST00000588131 LRP2BPQ9P2M1 347 aa13.64□□□□□ -0.23
VMP1-207ENST00000588131 ABCF2Q9UG63 623 aa13.64□□□□□ -0.23
VMP1-207ENST00000588131 MAST3O60307 1309 aa13.64□□□□□ -0.23
VMP1-207ENST00000588131 ZNF532Q9HCE3 1301 aa13.64□□□□□ -0.23
VMP1-207ENST00000588131 M0R2C6 588 aa13.63□□□□□ -0.23
VMP1-207ENST00000588131 MAP3K12Q12852 859 aa13.63□□□□□ -0.23
VMP1-207ENST00000588131 GRIK5Q16478 980 aa13.63□□□□□ -0.23
VMP1-207ENST00000588131 LRRFIP1Q32MZ4 808 aaKnown RBP13.63□□□□□ -0.23
VMP1-207ENST00000588131 ZSCAN25Q6NSZ9 544 aa13.63□□□□□ -0.23
VMP1-207ENST00000588131 MAGEB6Q8N7X4 407 aa13.63□□□□□ -0.23
VMP1-207ENST00000588131 APPBP2Q92624 585 aa13.63□□□□□ -0.23
VMP1-207ENST00000588131 OSBP2Q969R2 916 aa13.63□□□□□ -0.23
VMP1-207ENST00000588131 USP26Q9BXU7 913 aa13.63□□□□□ -0.23
VMP1-207ENST00000588131 LSG1Q9H089 658 aaKnown RBP13.63□□□□□ -0.23
VMP1-207ENST00000588131 ANO2Q9NQ90 1003 aa13.63□□□□□ -0.23
VMP1-207ENST00000588131 HELLSQ9NRZ9 838 aa13.63□□□□□ -0.23
VMP1-207ENST00000588131 RBM19Q9Y4C8 960 aaKnown RBP13.63□□□□□ -0.23
VMP1-207ENST00000588131 FAM205AQ6ZU69 1335 aa13.63□□□□□ -0.23
VMP1-207ENST00000588131 SALL1Q9NSC2 1324 aa13.63□□□□□ -0.23
VMP1-207ENST00000588131 SCN9AQ15858 1988 aa13.62□□□□□ -0.23
VMP1-207ENST00000588131 NFKBIEO00221 500 aa13.62□□□□□ -0.23
VMP1-207ENST00000588131 PPIP5K2O43314 1243 aa13.62□□□□□ -0.23
VMP1-207ENST00000588131 ECE2O60344 883 aa13.62□□□□□ -0.23
VMP1-207ENST00000588131 REC8O95072 547 aa13.62□□□□□ -0.23
VMP1-207ENST00000588131 PRDX5P30044 214 aa13.62□□□□□ -0.23
VMP1-207ENST00000588131 GTF2IP78347 998 aa13.62□□□□□ -0.23
VMP1-207ENST00000588131 UBE3CQ15386 1083 aa13.62□□□□□ -0.23
VMP1-207ENST00000588131 MCMDC2Q4G0Z9 681 aa13.62□□□□□ -0.23
VMP1-207ENST00000588131 WDR66Q8TBY9 1149 aa13.62□□□□□ -0.23
VMP1-207ENST00000588131 ZNF384Q8TF68 577 aa13.62□□□□□ -0.23
VMP1-207ENST00000588131 TBC1D32Q96NH3 1257 aa13.62□□□□□ -0.23
VMP1-207ENST00000588131 C22orf23Q9BZE7 217 aa13.62□□□□□ -0.23
VMP1-207ENST00000588131 PUS7LQ9H0K6 701 aaKnown RBP13.62□□□□□ -0.23
VMP1-207ENST00000588131 UPF2Q9HAU5 1272 aaKnown RBP13.62□□□□□ -0.23
VMP1-207ENST00000588131 ZNF277Q9NRM2 450 aaPredicted RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms