RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 ME3Q16798 604 aa16.85■□□□□ 0.29
LIG3-205ENST00000585941 CHMP4CQ96CF2 233 aa16.85■□□□□ 0.29
LIG3-205ENST00000585941 TPCN1Q9ULQ1 816 aa16.85■□□□□ 0.29
LIG3-205ENST00000585941 ZNF532Q9HCE3 1301 aa16.84■□□□□ 0.29
LIG3-205ENST00000585941 SEMA3EO15041 775 aa16.84■□□□□ 0.29
LIG3-205ENST00000585941 ZBTB22O15209 634 aa16.84■□□□□ 0.29
LIG3-205ENST00000585941 BCAMP50895 628 aa16.84■□□□□ 0.29
LIG3-205ENST00000585941 CCDC83Q8IWF9 413 aa16.84■□□□□ 0.29
LIG3-205ENST00000585941 CNBD1Q8NA66 436 aa16.84■□□□□ 0.29
LIG3-205ENST00000585941 CELF1Q92879 486 aaKnown RBP16.84■□□□□ 0.29
LIG3-205ENST00000585941 COL4A1P02462 1669 aa16.83■□□□□ 0.29
LIG3-205ENST00000585941 TCRBV5S4A2TA0A5A2 114 aa16.83■□□□□ 0.28
LIG3-205ENST00000585941 E7EWF7 191 aa16.83■□□□□ 0.28
LIG3-205ENST00000585941 LARGE1O95461 756 aa16.83■□□□□ 0.28
LIG3-205ENST00000585941 ZMYM6O95789 1325 aa16.82■□□□□ 0.28
LIG3-205ENST00000585941 FGAP02671 866 aa16.82■□□□□ 0.28
LIG3-205ENST00000585941 PDCP20941 246 aa16.82■□□□□ 0.28
LIG3-205ENST00000585941 FGD1P98174 961 aa16.82■□□□□ 0.28
LIG3-205ENST00000585941 STOX1Q6ZVD7 989 aa16.82■□□□□ 0.28
LIG3-205ENST00000585941 FBXL16Q8N461 479 aa16.82■□□□□ 0.28
LIG3-205ENST00000585941 PDS5AQ29RF7 1337 aaKnown RBP16.82■□□□□ 0.28
LIG3-205ENST00000585941 SNAP23O00161 211 aa16.81■□□□□ 0.28
LIG3-205ENST00000585941 ALX1Q15699 326 aa16.81■□□□□ 0.28
LIG3-205ENST00000585941 MCTP1Q6DN14 999 aa16.81■□□□□ 0.28
LIG3-205ENST00000585941 Q6ZUG5 572 aa16.81■□□□□ 0.28
LIG3-205ENST00000585941 AIDAQ96BJ3 306 aa16.81■□□□□ 0.28
LIG3-205ENST00000585941 LARP6Q9BRS8 491 aaKnown RBP16.81■□□□□ 0.28
LIG3-205ENST00000585941 AGXT2Q9BYV1 514 aa16.81■□□□□ 0.28
LIG3-205ENST00000585941 DENND2AQ9ULE3 1009 aa16.81■□□□□ 0.28
LIG3-205ENST00000585941 ATP6V1DQ9Y5K8 247 aa16.81■□□□□ 0.28
LIG3-205ENST00000585941 WDR19Q8NEZ3 1342 aa16.81■□□□□ 0.28
LIG3-205ENST00000585941 ZNF213O14771 459 aa16.81■□□□□ 0.28
LIG3-205ENST00000585941 PLSCR1O15162 318 aa16.81■□□□□ 0.28
LIG3-205ENST00000585941 FOXP2O15409 715 aa16.81■□□□□ 0.28
LIG3-205ENST00000585941 GYS1P13807 737 aa16.81■□□□□ 0.28
LIG3-205ENST00000585941 GNAT2P19087 354 aa16.81■□□□□ 0.28
LIG3-205ENST00000585941 TM4SF1P30408 202 aa16.81■□□□□ 0.28
LIG3-205ENST00000585941 EXOSC10Q01780 885 aaKnown RBP16.81■□□□□ 0.28
LIG3-205ENST00000585941 TXNRD1Q16881 649 aa16.81■□□□□ 0.28
LIG3-205ENST00000585941 TMED8Q6PL24 325 aaPredicted RBP16.81■□□□□ 0.28
LIG3-205ENST00000585941 VPS37DQ86XT2 251 aa16.81■□□□□ 0.28
LIG3-205ENST00000585941 WWC3Q9ULE0 1092 aa16.81■□□□□ 0.28
LIG3-205ENST00000585941 TNRC6CQ9HCJ0 1690 aaKnown RBP16.8■□□□□ 0.28
LIG3-205ENST00000585941 STX6O43752 255 aa16.8■□□□□ 0.28
LIG3-205ENST00000585941 ZSCAN22P10073 491 aaPredicted RBP16.8■□□□□ 0.28
LIG3-205ENST00000585941 GJB2P29033 226 aa16.8■□□□□ 0.28
LIG3-205ENST00000585941 ST5P78524 1137 aa16.8■□□□□ 0.28
LIG3-205ENST00000585941 MAGEB6Q8N7X4 407 aa16.8■□□□□ 0.28
LIG3-205ENST00000585941 TCEANC2Q96MN5 208 aa16.8■□□□□ 0.28
LIG3-205ENST00000585941 STRBPQ96SI9 672 aaKnown RBP16.8■□□□□ 0.28
LIG3-205ENST00000585941 LRP2BPQ9P2M1 347 aa16.8■□□□□ 0.28
LIG3-205ENST00000585941 MYH13Q9UKX3 1938 aa16.8■□□□□ 0.28
LIG3-205ENST00000585941 IGSF3O75054 1194 aa16.79■□□□□ 0.28
LIG3-205ENST00000585941 SYT1P21579 422 aa16.79■□□□□ 0.28
LIG3-205ENST00000585941 GRAPQ13588 217 aa16.79■□□□□ 0.28
LIG3-205ENST00000585941 FBXO33Q7Z6M2 555 aa16.79■□□□□ 0.28
LIG3-205ENST00000585941 GRAPLQ8TC17 118 aaPredicted RBP16.79■□□□□ 0.28
LIG3-205ENST00000585941 PNPLA7Q6ZV29 1317 aa16.79■□□□□ 0.28
LIG3-205ENST00000585941 PATL2C9JE40 543 aaKnown RBP16.78■□□□□ 0.28
LIG3-205ENST00000585941 KLHL40Q2TBA0 621 aa16.78■□□□□ 0.28
LIG3-205ENST00000585941 TTLL5Q6EMB2 1281 aa16.78■□□□□ 0.28
LIG3-205ENST00000585941 PRR5LQ6MZQ0 368 aa16.78■□□□□ 0.28
LIG3-205ENST00000585941 NECAB1Q8N987 351 aa16.78■□□□□ 0.28
LIG3-205ENST00000585941 NCOA7Q8NI08 942 aa16.78■□□□□ 0.28
LIG3-205ENST00000585941 GTF3C6Q969F1 213 aa16.78■□□□□ 0.28
LIG3-205ENST00000585941 FAM84BQ96KN1 310 aaPredicted RBP16.78■□□□□ 0.28
LIG3-205ENST00000585941 LLPHQ9BRT6 129 aaKnown RBP16.78■□□□□ 0.28
LIG3-205ENST00000585941 MCM5P33992 734 aa16.78■□□□□ 0.28
LIG3-205ENST00000585941 GYG1P46976 350 aa16.78■□□□□ 0.28
LIG3-205ENST00000585941 ST3GAL1Q11201 340 aa16.78■□□□□ 0.28
LIG3-205ENST00000585941 TRDNQ13061 729 aa16.78■□□□□ 0.28
LIG3-205ENST00000585941 COL9A3Q14050 684 aaPredicted RBP16.78■□□□□ 0.28
LIG3-205ENST00000585941 RALYLQ86SE5 291 aaKnown RBP16.78■□□□□ 0.28
LIG3-205ENST00000585941 BRF1Q92994 677 aa16.78■□□□□ 0.28
LIG3-205ENST00000585941 PFKFB2O60825 505 aa16.77■□□□□ 0.28
LIG3-205ENST00000585941 APPP05067 770 aa16.77■□□□□ 0.28
LIG3-205ENST00000585941 SERPINB2P05120 415 aa16.77■□□□□ 0.28
LIG3-205ENST00000585941 HIBADHP31937 336 aaKnown RBP16.77■□□□□ 0.28
LIG3-205ENST00000585941 FLAD1Q8NFF5 587 aa16.77■□□□□ 0.28
LIG3-205ENST00000585941 RPGRQ92834 1020 aaKnown RBP16.77■□□□□ 0.28
LIG3-205ENST00000585941 ZNF274Q96GC6 653 aaPredicted RBP16.77■□□□□ 0.28
LIG3-205ENST00000585941 NACAP1Q9BZK3 213 aa16.77■□□□□ 0.28
LIG3-205ENST00000585941 LMBRD1Q9NUN5 540 aa16.77■□□□□ 0.28
LIG3-205ENST00000585941 ISY1Q9ULR0 285 aaKnown RBP16.77■□□□□ 0.28
LIG3-205ENST00000585941 LEMD3Q9Y2U8 911 aa16.77■□□□□ 0.28
LIG3-205ENST00000585941 DDX49Q9Y6V7 483 aaKnown RBP16.77■□□□□ 0.28
LIG3-205ENST00000585941 MBD4O95243 580 aa16.76■□□□□ 0.27
LIG3-205ENST00000585941 EVCP57679 992 aa16.76■□□□□ 0.27
LIG3-205ENST00000585941 CRY2Q49AN0 593 aa16.76■□□□□ 0.27
LIG3-205ENST00000585941 KIF3AQ9Y496 699 aa16.76■□□□□ 0.27
LIG3-205ENST00000585941 RXRBP28702 533 aa16.75■□□□□ 0.27
LIG3-205ENST00000585941 MB21D2Q8IYB1 491 aaPredicted RBP16.75■□□□□ 0.27
LIG3-205ENST00000585941 PROM2Q8N271 834 aa16.75■□□□□ 0.27
LIG3-205ENST00000585941 CCDC24Q8N4L8 307 aa16.75■□□□□ 0.27
LIG3-205ENST00000585941 CHD4Q14839 1912 aa16.75■□□□□ 0.27
LIG3-205ENST00000585941 RGPD3A6NKT7 1758 aaPredicted RBP16.75■□□□□ 0.27
LIG3-205ENST00000585941 RGPD4Q7Z3J3 1758 aa16.75■□□□□ 0.27
LIG3-205ENST00000585941 F13A1P00488 732 aa16.75■□□□□ 0.27
LIG3-205ENST00000585941 HAND2P61296 217 aa16.75■□□□□ 0.27
LIG3-205ENST00000585941 FOXD4L5Q5VV16 416 aaPredicted RBP16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms