RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-222ENST00000582792 A0A1B0GUL6 1792 aa17.3■□□□□ 0.36
SS18-222ENST00000582792 ANKRD18BA2A2Z9 1011 aa17.3■□□□□ 0.36
SS18-222ENST00000582792 ANP32CO43423 234 aa17.3■□□□□ 0.36
SS18-222ENST00000582792 INHBEP58166 350 aa17.3■□□□□ 0.36
SS18-222ENST00000582792 SSC5DA1L4H1 1573 aa17.3■□□□□ 0.36
SS18-222ENST00000582792 LAMB1P07942 1786 aa17.3■□□□□ 0.36
SS18-222ENST00000582792 CACNA1FO60840 1977 aa17.29■□□□□ 0.36
SS18-222ENST00000582792 MANSC4A6NHS7 340 aaPredicted RBP17.29■□□□□ 0.36
SS18-222ENST00000582792 SNAP23O00161 211 aa17.29■□□□□ 0.36
SS18-222ENST00000582792 PPP1R12BO60237 982 aaPredicted RBP17.29■□□□□ 0.36
SS18-222ENST00000582792 ZBTB48P10074 688 aaPredicted RBP17.29■□□□□ 0.36
SS18-222ENST00000582792 SLC10A4Q96EP9 437 aa17.29■□□□□ 0.36
SS18-222ENST00000582792 CENPFP49454 3210 aa17.29■□□□□ 0.36
SS18-222ENST00000582792 MKI67P46013 3256 aaKnown RBP17.28■□□□□ 0.36
SS18-222ENST00000582792 UNCXA6NJT0 531 aa17.28■□□□□ 0.36
SS18-222ENST00000582792 TAF5LO75529 589 aa17.28■□□□□ 0.36
SS18-222ENST00000582792 IL1R1P14778 569 aa17.28■□□□□ 0.36
SS18-222ENST00000582792 FKBP1AP62942 108 aaKnown RBP17.28■□□□□ 0.36
SS18-222ENST00000582792 ZNF804AQ7Z570 1209 aa17.28■□□□□ 0.36
SS18-222ENST00000582792 IFNL1Q8IU54 200 aa17.28■□□□□ 0.36
SS18-222ENST00000582792 HELBQ8NG08 1087 aaPredicted RBP17.28■□□□□ 0.36
SS18-222ENST00000582792 PCDHAC2Q9Y5I4 1007 aa17.28■□□□□ 0.36
SS18-222ENST00000582792 SPDYE2BA6NHP3 402 aa17.27■□□□□ 0.36
SS18-222ENST00000582792 MYO1BO43795 1136 aa17.27■□□□□ 0.36
SS18-222ENST00000582792 SPDYE6P0CI01 402 aa17.27■□□□□ 0.36
SS18-222ENST00000582792 FOXO4P98177 505 aa17.27■□□□□ 0.36
SS18-222ENST00000582792 IFIT5Q13325 482 aaKnown RBP17.27■□□□□ 0.36
SS18-222ENST00000582792 CFAP100Q494V2 611 aa17.27■□□□□ 0.36
SS18-222ENST00000582792 CCDC184Q52MB2 194 aa17.27■□□□□ 0.36
SS18-222ENST00000582792 NCBP3Q53F19 620 aaKnown RBP17.27■□□□□ 0.36
SS18-222ENST00000582792 WNK4Q96J92 1243 aa17.27■□□□□ 0.36
SS18-222ENST00000582792 CLMNQ96JQ2 1002 aa17.27■□□□□ 0.36
SS18-222ENST00000582792 FANCIQ9NVI1 1328 aa17.26■□□□□ 0.35
SS18-222ENST00000582792 F8W031 263 aaPredicted RBP17.26■□□□□ 0.35
SS18-222ENST00000582792 SUPT20HL1Q3ZLR7 823 aa17.26■□□□□ 0.35
SS18-222ENST00000582792 PRMT6Q96LA8 375 aaPredicted RBP17.26■□□□□ 0.35
SS18-222ENST00000582792 CLRN2A0PK11 232 aa17.25■□□□□ 0.35
SS18-222ENST00000582792 IGF2BP3O00425 579 aaKnown RBP eCLIP17.25■□□□□ 0.35
SS18-222ENST00000582792 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.25■□□□□ 0.35
SS18-222ENST00000582792 TRIM17Q9Y577 477 aa17.25■□□□□ 0.35
SS18-222ENST00000582792 AOX1Q06278 1338 aa17.24■□□□□ 0.35
SS18-222ENST00000582792 VAMP4O75379 141 aa17.24■□□□□ 0.35
SS18-222ENST00000582792 BEND3Q5T5X7 828 aa17.24■□□□□ 0.35
SS18-222ENST00000582792 NBPF12Q5TAG4 269 aaPredicted RBP17.24■□□□□ 0.35
SS18-222ENST00000582792 OTOP1Q7RTM1 612 aa17.24■□□□□ 0.35
SS18-222ENST00000582792 VEZTQ9HBM0 779 aa17.24■□□□□ 0.35
SS18-222ENST00000582792 CHMP3Q9Y3E7 222 aa17.24■□□□□ 0.35
SS18-222ENST00000582792 USP2O75604 605 aaPredicted RBP17.23■□□□□ 0.35
SS18-222ENST00000582792 IREB2P48200 963 aaKnown RBP17.23■□□□□ 0.35
SS18-222ENST00000582792 LMBR1LQ6UX01 489 aa17.23■□□□□ 0.35
SS18-222ENST00000582792 JAG2Q9Y219 1238 aa17.23■□□□□ 0.35
SS18-222ENST00000582792 F6X3S4 739 aa17.22■□□□□ 0.35
SS18-222ENST00000582792 GJA5P36382 358 aa17.22■□□□□ 0.35
SS18-222ENST00000582792 RBM5P52756 815 aaKnown RBP eCLIP17.22■□□□□ 0.35
SS18-222ENST00000582792 RASA3Q14644 834 aa17.22■□□□□ 0.35
SS18-222ENST00000582792 CCDC57Q2TAC2 916 aa17.22■□□□□ 0.35
SS18-222ENST00000582792 EPHA10Q5JZY3 1008 aa17.22■□□□□ 0.35
SS18-222ENST00000582792 INTS3Q68E01 1043 aaKnown RBP17.22■□□□□ 0.35
SS18-222ENST00000582792 OTUD7BQ6GQQ9 843 aa17.22■□□□□ 0.35
SS18-222ENST00000582792 LDHAL6AQ6ZMR3 332 aa17.22■□□□□ 0.35
SS18-222ENST00000582792 ANKRD13AQ8IZ07 590 aa17.22■□□□□ 0.35
SS18-222ENST00000582792 FAM205AQ6ZU69 1335 aa17.21■□□□□ 0.35
SS18-222ENST00000582792 TESPA1A2RU30 521 aaPredicted RBP17.21■□□□□ 0.35
SS18-222ENST00000582792 PLIN1O60240 522 aa17.21■□□□□ 0.35
SS18-222ENST00000582792 ERO1AQ96HE7 468 aa17.21■□□□□ 0.35
SS18-222ENST00000582792 ZNF594Q96JF6 807 aaPredicted RBP17.21■□□□□ 0.35
SS18-222ENST00000582792 OTOFQ9HC10 1997 aa17.2■□□□□ 0.34
SS18-222ENST00000582792 GRM8O00222 908 aa17.2■□□□□ 0.34
SS18-222ENST00000582792 EXOSC9Q06265 439 aaKnown RBP17.2■□□□□ 0.34
SS18-222ENST00000582792 CRHR2Q13324 411 aa17.2■□□□□ 0.34
SS18-222ENST00000582792 TNFAIP1Q13829 316 aa17.2■□□□□ 0.34
SS18-222ENST00000582792 TAF7LQ5H9L4 462 aa17.2■□□□□ 0.34
SS18-222ENST00000582792 WDR63Q8IWG1 891 aa17.2■□□□□ 0.34
SS18-222ENST00000582792 CNNM1Q9NRU3 951 aa17.2■□□□□ 0.34
SS18-222ENST00000582792 SERPINA10Q9UK55 444 aa17.2■□□□□ 0.34
SS18-222ENST00000582792 PTPN22Q9Y2R2 807 aa17.2■□□□□ 0.34
SS18-222ENST00000582792 BRCA2P51587 3418 aa17.2■□□□□ 0.34
SS18-222ENST00000582792 POTEFA5A3E0 1075 aa17.19■□□□□ 0.34
SS18-222ENST00000582792 UBE4AQ14139 1066 aa17.19■□□□□ 0.34
SS18-222ENST00000582792 SPDYE2Q495Y8 402 aa17.19■□□□□ 0.34
SS18-222ENST00000582792 TDRD7Q8NHU6 1098 aaKnown RBP17.19■□□□□ 0.34
SS18-222ENST00000582792 CD99L2Q8TCZ2 262 aa17.19■□□□□ 0.34
SS18-222ENST00000582792 GCC1Q96CN9 775 aa17.19■□□□□ 0.34
SS18-222ENST00000582792 PTPN18Q99952 460 aa17.19■□□□□ 0.34
SS18-222ENST00000582792 ZNF70Q9UC06 446 aaPredicted RBP17.19■□□□□ 0.34
SS18-222ENST00000582792 RBBP6Q7Z6E9 1792 aaKnown RBP17.19■□□□□ 0.34
SS18-222ENST00000582792 ARAP2Q8WZ64 1704 aa17.18■□□□□ 0.34
SS18-222ENST00000582792 MFSD14BQ5SR56 506 aa17.18■□□□□ 0.34
SS18-222ENST00000582792 TDRD3Q9H7E2 651 aaKnown RBP17.18■□□□□ 0.34
SS18-222ENST00000582792 ELP3Q9H9T3 547 aa17.18■□□□□ 0.34
SS18-222ENST00000582792 TTF2Q9UNY4 1162 aaKnown RBP17.18■□□□□ 0.34
SS18-222ENST00000582792 HIBADHP31937 336 aaKnown RBP17.17■□□□□ 0.34
SS18-222ENST00000582792 GYG1P46976 350 aa17.17■□□□□ 0.34
SS18-222ENST00000582792 SP3Q02447 781 aa17.17■□□□□ 0.34
SS18-222ENST00000582792 DIEXFQ68CQ4 756 aaKnown RBP17.17■□□□□ 0.34
SS18-222ENST00000582792 OPTNQ96CV9 577 aa17.17■□□□□ 0.34
SS18-222ENST00000582792 TEPSINQ96N21 525 aa17.17■□□□□ 0.34
SS18-222ENST00000582792 EFCC1Q9HA90 598 aa17.17■□□□□ 0.34
SS18-222ENST00000582792 C9orf78Q9NZ63 289 aaPredicted RBP17.17■□□□□ 0.34
SS18-222ENST00000582792 DZIP1LQ8IYY4 767 aaKnown RBP17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms