RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 FMR1NBQ8N0W7 255 aaPredicted RBP7.92□□□□□ -1.14
SMCHD1-204ENST00000581226 GIPC2Q8TF65 315 aa7.92□□□□□ -1.14
SMCHD1-204ENST00000581226 OSBPL7Q9BZF2 842 aa7.92□□□□□ -1.14
SMCHD1-204ENST00000581226 ABCB6Q9NP58 842 aa7.92□□□□□ -1.14
SMCHD1-204ENST00000581226 RNF19AQ9NV58 838 aa7.92□□□□□ -1.14
SMCHD1-204ENST00000581226 PARP2Q9UGN5 583 aa7.92□□□□□ -1.14
SMCHD1-204ENST00000581226 DEAF1O75398 565 aaPredicted RBP7.91□□□□□ -1.14
SMCHD1-204ENST00000581226 SPATA31C1P0DKV0 1188 aa7.91□□□□□ -1.14
SMCHD1-204ENST00000581226 GNA15P30679 374 aa7.91□□□□□ -1.14
SMCHD1-204ENST00000581226 XPCQ01831 940 aaPredicted RBP7.91□□□□□ -1.14
SMCHD1-204ENST00000581226 IKBKEQ14164 716 aa7.91□□□□□ -1.14
SMCHD1-204ENST00000581226 ZNF326Q5BKZ1 582 aaKnown RBP7.91□□□□□ -1.14
SMCHD1-204ENST00000581226 DTHD1Q6ZMT9 781 aa7.91□□□□□ -1.14
SMCHD1-204ENST00000581226 FBXO11Q86XK2 927 aa7.91□□□□□ -1.14
SMCHD1-204ENST00000581226 SLC7A3Q8WY07 619 aa7.91□□□□□ -1.14
SMCHD1-204ENST00000581226 FSCN2O14926 492 aa7.9□□□□□ -1.14
SMCHD1-204ENST00000581226 IGHA1P01876 353 aa7.9□□□□□ -1.14
SMCHD1-204ENST00000581226 ITPKAP23677 461 aa7.9□□□□□ -1.14
SMCHD1-204ENST00000581226 PSMD2Q13200 908 aa7.9□□□□□ -1.14
SMCHD1-204ENST00000581226 SETDB1Q15047 1291 aa7.9□□□□□ -1.14
SMCHD1-204ENST00000581226 ALYREFQ86V81 257 aaKnown RBP7.9□□□□□ -1.14
SMCHD1-204ENST00000581226 MAP4K3Q8IVH8 894 aa7.9□□□□□ -1.14
SMCHD1-204ENST00000581226 RGS22Q8NE09 1264 aa7.9□□□□□ -1.14
SMCHD1-204ENST00000581226 SRCIN1Q9C0H9 1055 aa7.9□□□□□ -1.14
SMCHD1-204ENST00000581226 CLEC4MQ9H2X3 399 aaPredicted RBP7.9□□□□□ -1.14
SMCHD1-204ENST00000581226 C12orf49Q9H741 205 aa7.9□□□□□ -1.14
SMCHD1-204ENST00000581226 SRA1Q9HD15 236 aaKnown RBP7.9□□□□□ -1.14
SMCHD1-204ENST00000581226 SOX1O00570 391 aaPredicted RBP7.89□□□□□ -1.15
SMCHD1-204ENST00000581226 ELNP15502 786 aa7.89□□□□□ -1.15
SMCHD1-204ENST00000581226 EIF4BP23588 611 aaKnown RBP7.89□□□□□ -1.15
SMCHD1-204ENST00000581226 ARL4DP49703 201 aa7.89□□□□□ -1.15
SMCHD1-204ENST00000581226 PIP4K2BP78356 416 aa7.89□□□□□ -1.15
SMCHD1-204ENST00000581226 DAB2P98082 770 aa7.89□□□□□ -1.15
SMCHD1-204ENST00000581226 PTPN12Q05209 780 aaKnown RBP7.89□□□□□ -1.15
SMCHD1-204ENST00000581226 PCDH1Q08174 1060 aa7.89□□□□□ -1.15
SMCHD1-204ENST00000581226 GRIK4Q16099 956 aa7.89□□□□□ -1.15
SMCHD1-204ENST00000581226 CARD10Q9BWT7 1032 aa7.89□□□□□ -1.15
SMCHD1-204ENST00000581226 ZNF576Q9H609 170 aa7.89□□□□□ -1.15
SMCHD1-204ENST00000581226 ZFYVE1Q9HBF4 777 aa7.89□□□□□ -1.15
SMCHD1-204ENST00000581226 SEC31BQ9NQW1 1179 aa7.89□□□□□ -1.15
SMCHD1-204ENST00000581226 AKAP2Q9Y2D5 859 aa7.89□□□□□ -1.15
SMCHD1-204ENST00000581226 AK5Q9Y6K8 562 aa7.89□□□□□ -1.15
SMCHD1-204ENST00000581226 ESRRAP11474 423 aaPredicted RBP7.88□□□□□ -1.15
SMCHD1-204ENST00000581226 XRCC5P13010 732 aaKnown RBP7.88□□□□□ -1.15
SMCHD1-204ENST00000581226 GSTT1P30711 240 aa7.88□□□□□ -1.15
SMCHD1-204ENST00000581226 KLHL23Q8NBE8 558 aa7.88□□□□□ -1.15
SMCHD1-204ENST00000581226 GALNT11Q8NCW6 608 aa7.88□□□□□ -1.15
SMCHD1-204ENST00000581226 DCAF11Q8TEB1 546 aa7.88□□□□□ -1.15
SMCHD1-204ENST00000581226 WNT8BQ93098 351 aa7.88□□□□□ -1.15
SMCHD1-204ENST00000581226 DCAF5Q96JK2 942 aa7.88□□□□□ -1.15
SMCHD1-204ENST00000581226 FAM161BQ96MY7 647 aa7.88□□□□□ -1.15
SMCHD1-204ENST00000581226 OSGEPQ9NPF4 335 aa7.88□□□□□ -1.15
SMCHD1-204ENST00000581226 APBA3O96018 575 aa7.87□□□□□ -1.15
SMCHD1-204ENST00000581226 USP17L7P0C7H9 530 aa7.87□□□□□ -1.15
SMCHD1-204ENST00000581226 C19orf57Q0VDD7 668 aa7.87□□□□□ -1.15
SMCHD1-204ENST00000581226 ZNF423Q2M1K9 1284 aa7.87□□□□□ -1.15
SMCHD1-204ENST00000581226 HGSNATQ68CP4 663 aa7.87□□□□□ -1.15
SMCHD1-204ENST00000581226 TMC4Q7Z404 712 aa7.87□□□□□ -1.15
SMCHD1-204ENST00000581226 FOXD4L4Q8WXT5 416 aaPredicted RBP7.87□□□□□ -1.15
SMCHD1-204ENST00000581226 MRS2Q9HD23 443 aa7.87□□□□□ -1.15
SMCHD1-204ENST00000581226 FAM8A1Q9UBU6 413 aa7.87□□□□□ -1.15
SMCHD1-204ENST00000581226 KRBA1A5PL33 1030 aa7.86□□□□□ -1.15
SMCHD1-204ENST00000581226 DLL1O00548 723 aa7.86□□□□□ -1.15
SMCHD1-204ENST00000581226 ZNF16P17020 682 aaPredicted RBP7.86□□□□□ -1.15
SMCHD1-204ENST00000581226 CD68P34810 354 aaPredicted RBP7.86□□□□□ -1.15
SMCHD1-204ENST00000581226 RPS26P11Q5JNZ5 115 aaPredicted RBP7.86□□□□□ -1.15
SMCHD1-204ENST00000581226 KLHDC7BQ96G42 594 aa7.86□□□□□ -1.15
SMCHD1-204ENST00000581226 BCL11AQ9H165 835 aa7.86□□□□□ -1.15
SMCHD1-204ENST00000581226 SORBS3O60504 671 aa7.85□□□□□ -1.15
SMCHD1-204ENST00000581226 GSTM4Q03013 218 aa7.85□□□□□ -1.15
SMCHD1-204ENST00000581226 IGF2-ASQ6U949 168 aa7.85□□□□□ -1.15
SMCHD1-204ENST00000581226 SHISA2Q6UWI4 295 aa7.85□□□□□ -1.15
SMCHD1-204ENST00000581226 C3orf58Q8NDZ4 430 aa7.85□□□□□ -1.15
SMCHD1-204ENST00000581226 NACC1Q96RE7 527 aa7.85□□□□□ -1.15
SMCHD1-204ENST00000581226 SOX17Q9H6I2 414 aaPredicted RBP7.85□□□□□ -1.15
SMCHD1-204ENST00000581226 RBM47A0AV96 593 aaKnown RBP7.84□□□□□ -1.15
SMCHD1-204ENST00000581226 DDX3YO15523 660 aaKnown RBP7.84□□□□□ -1.15
SMCHD1-204ENST00000581226 B3GALT4O96024 378 aa7.84□□□□□ -1.15
SMCHD1-204ENST00000581226 ZNF157P51786 506 aaPredicted RBP7.84□□□□□ -1.15
SMCHD1-204ENST00000581226 FAAP100Q0VG06 881 aa7.84□□□□□ -1.15
SMCHD1-204ENST00000581226 DDX54Q8TDD1 881 aaKnown RBP7.84□□□□□ -1.15
SMCHD1-204ENST00000581226 KRTAP4-8Q9BYQ9 185 aa7.84□□□□□ -1.15
SMCHD1-204ENST00000581226 USP21Q9UK80 565 aa7.84□□□□□ -1.15
SMCHD1-204ENST00000581226 C9orf172C9J069 976 aa7.83□□□□□ -1.16
SMCHD1-204ENST00000581226 TM4SF5O14894 197 aa7.83□□□□□ -1.16
SMCHD1-204ENST00000581226 SELPP16109 830 aa7.83□□□□□ -1.16
SMCHD1-204ENST00000581226 ITGAEP38570 1179 aa7.83□□□□□ -1.16
SMCHD1-204ENST00000581226 NLRP12P59046 1061 aa7.83□□□□□ -1.16
SMCHD1-204ENST00000581226 FOXD4L6Q3SYB3 417 aaPredicted RBP7.83□□□□□ -1.16
SMCHD1-204ENST00000581226 FOXD4L3Q6VB84 417 aaPredicted RBP7.83□□□□□ -1.16
SMCHD1-204ENST00000581226 KCNK4Q9NYG8 393 aa7.83□□□□□ -1.16
SMCHD1-204ENST00000581226 VTI1BQ9UEU0 232 aa7.83□□□□□ -1.16
SMCHD1-204ENST00000581226 GPN3Q9UHW5 284 aaPredicted RBP7.83□□□□□ -1.16
SMCHD1-204ENST00000581226 EIF4EBP3O60516 100 aaPredicted RBP7.82□□□□□ -1.16
SMCHD1-204ENST00000581226 XP32Q5T750 250 aa7.82□□□□□ -1.16
SMCHD1-204ENST00000581226 TPTE2Q6XPS3 522 aa7.82□□□□□ -1.16
SMCHD1-204ENST00000581226 LENG1Q96BZ8 264 aaPredicted RBP7.82□□□□□ -1.16
SMCHD1-204ENST00000581226 MRPL18Q9H0U6 180 aaKnown RBP7.82□□□□□ -1.16
SMCHD1-204ENST00000581226 PPM1HQ9ULR3 514 aa7.82□□□□□ -1.16
SMCHD1-204ENST00000581226 ADAM11O75078 769 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms