RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 IDH1O75874 414 aaKnown RBP30.38■■■□□ 2.45
SHMT1-207ENST00000580002 CASC1Q6TDU7 716 aa30.38■■■□□ 2.45
SHMT1-207ENST00000580002 RTFDC1Q9BY42 306 aaPredicted RBP30.38■■■□□ 2.45
SHMT1-207ENST00000580002 ZC3H12CQ9C0D7 883 aaKnown RBP30.38■■■□□ 2.45
SHMT1-207ENST00000580002 DENND2AQ9ULE3 1009 aa30.38■■■□□ 2.45
SHMT1-207ENST00000580002 BCS1LQ9Y276 419 aa30.36■■■□□ 2.45
SHMT1-207ENST00000580002 SGSM2O43147 1006 aa30.36■■■□□ 2.45
SHMT1-207ENST00000580002 CCDC93Q567U6 631 aa30.36■■■□□ 2.45
SHMT1-207ENST00000580002 CCDC129Q6ZRS4 1044 aa30.36■■■□□ 2.45
SHMT1-207ENST00000580002 ABCF2Q9UG63 623 aa30.36■■■□□ 2.45
SHMT1-207ENST00000580002 RNF113AO15541 343 aaKnown RBP30.35■■■□□ 2.45
SHMT1-207ENST00000580002 IL1R1P14778 569 aa30.35■■■□□ 2.45
SHMT1-207ENST00000580002 AOC3Q16853 763 aa30.35■■■□□ 2.45
SHMT1-207ENST00000580002 CC2D2BQ6DHV5 1058 aa30.35■■■□□ 2.45
SHMT1-207ENST00000580002 KCNQ5Q9NR82 932 aa30.35■■■□□ 2.45
SHMT1-207ENST00000580002 RBM19Q9Y4C8 960 aaKnown RBP30.35■■■□□ 2.45
SHMT1-207ENST00000580002 GRIK5Q16478 980 aa30.34■■■□□ 2.45
SHMT1-207ENST00000580002 ZNF589Q86UQ0 364 aaPredicted RBP30.34■■■□□ 2.45
SHMT1-207ENST00000580002 DBNDD1Q9H9R9 158 aa30.34■■■□□ 2.45
SHMT1-207ENST00000580002 BRCA1P38398 1863 aaKnown RBP30.34■■■□□ 2.45
SHMT1-207ENST00000580002 SEMA3EO15041 775 aa30.33■■■□□ 2.45
SHMT1-207ENST00000580002 TTF1Q15361 905 aaPredicted RBP30.33■■■□□ 2.45
SHMT1-207ENST00000580002 SLC9C2Q5TAH2 1124 aa30.33■■■□□ 2.45
SHMT1-207ENST00000580002 OSBP2Q969R2 916 aa30.33■■■□□ 2.45
SHMT1-207ENST00000580002 ZNF277Q9NRM2 450 aaPredicted RBP30.32■■■□□ 2.44
SHMT1-207ENST00000580002 CHD4Q14839 1912 aa30.32■■■□□ 2.44
SHMT1-207ENST00000580002 ZMYM1Q5SVZ6 1142 aa30.31■■■□□ 2.44
SHMT1-207ENST00000580002 ZNF384Q8TF68 577 aa30.31■■■□□ 2.44
SHMT1-207ENST00000580002 EYA3Q99504 573 aa30.31■■■□□ 2.44
SHMT1-207ENST00000580002 COA1Q9GZY4 146 aa30.31■■■□□ 2.44
SHMT1-207ENST00000580002 LRP2BPQ9P2M1 347 aa30.31■■■□□ 2.44
SHMT1-207ENST00000580002 HIP1O00291 1037 aa30.31■■■□□ 2.44
SHMT1-207ENST00000580002 PDE6AP16499 860 aa30.31■■■□□ 2.44
SHMT1-207ENST00000580002 ADD2P35612 726 aa30.31■■■□□ 2.44
SHMT1-207ENST00000580002 RTKN2Q8IZC4 609 aa30.31■■■□□ 2.44
SHMT1-207ENST00000580002 USP26Q9BXU7 913 aa30.31■■■□□ 2.44
SHMT1-207ENST00000580002 UTRNP46939 3433 aa30.3■■■□□ 2.44
SHMT1-207ENST00000580002 M0R2C6 588 aa30.3■■■□□ 2.44
SHMT1-207ENST00000580002 PRDX5P30044 214 aa30.3■■■□□ 2.44
SHMT1-207ENST00000580002 MAGEB6Q8N7X4 407 aa30.3■■■□□ 2.44
SHMT1-207ENST00000580002 PUS7LQ9H0K6 701 aaKnown RBP30.3■■■□□ 2.44
SHMT1-207ENST00000580002 RFX7Q2KHR2 1363 aa30.29■■■□□ 2.44
SHMT1-207ENST00000580002 TCRBV5S4A2TA0A5A2 114 aa30.29■■■□□ 2.44
SHMT1-207ENST00000580002 PTH1RQ03431 593 aa30.29■■■□□ 2.44
SHMT1-207ENST00000580002 MXD3Q9BW11 206 aa30.29■■■□□ 2.44
SHMT1-207ENST00000580002 ANO2Q9NQ90 1003 aa30.29■■■□□ 2.44
SHMT1-207ENST00000580002 ZNF532Q9HCE3 1301 aa30.29■■■□□ 2.44
SHMT1-207ENST00000580002 GTF2IP78347 998 aa30.28■■■□□ 2.44
SHMT1-207ENST00000580002 SYT17Q9BSW7 474 aa30.28■■■□□ 2.44
SHMT1-207ENST00000580002 RAI14Q9P0K7 980 aa30.28■■■□□ 2.44
SHMT1-207ENST00000580002 SOCS7O14512 581 aa30.28■■■□□ 2.44
SHMT1-207ENST00000580002 KIAA2012Q0VF49 1180 aa30.28■■■□□ 2.44
SHMT1-207ENST00000580002 PPIP5K2O43314 1243 aa30.27■■■□□ 2.44
SHMT1-207ENST00000580002 RUFY2Q8WXA3 655 aa30.27■■■□□ 2.44
SHMT1-207ENST00000580002 PSMD1Q99460 953 aa30.27■■■□□ 2.44
SHMT1-207ENST00000580002 LSG1Q9H089 658 aaKnown RBP30.27■■■□□ 2.44
SHMT1-207ENST00000580002 MAST3O60307 1309 aa30.27■■■□□ 2.44
SHMT1-207ENST00000580002 PDS5AQ29RF7 1337 aaKnown RBP30.27■■■□□ 2.44
SHMT1-207ENST00000580002 NFKBIEO00221 500 aa30.26■■■□□ 2.44
SHMT1-207ENST00000580002 MAP3K12Q12852 859 aa30.26■■■□□ 2.44
SHMT1-207ENST00000580002 MCMDC2Q4G0Z9 681 aa30.26■■■□□ 2.44
SHMT1-207ENST00000580002 ADGRA1Q86SQ6 560 aa30.26■■■□□ 2.44
SHMT1-207ENST00000580002 FBXW7Q969H0 707 aa30.26■■■□□ 2.44
SHMT1-207ENST00000580002 C22orf23Q9BZE7 217 aa30.26■■■□□ 2.44
SHMT1-207ENST00000580002 DDX24Q9GZR7 859 aaKnown RBP eCLIP30.26■■■□□ 2.44
SHMT1-207ENST00000580002 G3V3G9 751 aa30.26■■■□□ 2.43
SHMT1-207ENST00000580002 ZBTB22O15209 634 aa30.26■■■□□ 2.43
SHMT1-207ENST00000580002 DCAF8Q5TAQ9 597 aa30.26■■■□□ 2.43
SHMT1-207ENST00000580002 MYH13Q9UKX3 1938 aa30.25■■■□□ 2.43
SHMT1-207ENST00000580002 COL4A5P29400 1685 aa30.25■■■□□ 2.43
SHMT1-207ENST00000580002 ECE2O60344 883 aa30.25■■■□□ 2.43
SHMT1-207ENST00000580002 TBC1D32Q96NH3 1257 aa30.25■■■□□ 2.43
SHMT1-207ENST00000580002 DOCK2Q92608 1830 aa30.25■■■□□ 2.43
SHMT1-207ENST00000580002 ZFYP08048 801 aaPredicted RBP30.24■■■□□ 2.43
SHMT1-207ENST00000580002 VPS53Q5VIR6 699 aa30.24■■■□□ 2.43
SHMT1-207ENST00000580002 SUPT20HQ8NEM7 779 aa30.24■■■□□ 2.43
SHMT1-207ENST00000580002 APPBP2Q92624 585 aa30.24■■■□□ 2.43
SHMT1-207ENST00000580002 HELLSQ9NRZ9 838 aa30.24■■■□□ 2.43
SHMT1-207ENST00000580002 REC8O95072 547 aa30.23■■■□□ 2.43
SHMT1-207ENST00000580002 UBE3CQ15386 1083 aa30.23■■■□□ 2.43
SHMT1-207ENST00000580002 ERICH6Q7L0X2 663 aa30.23■■■□□ 2.43
SHMT1-207ENST00000580002 WDR66Q8TBY9 1149 aa30.23■■■□□ 2.43
SHMT1-207ENST00000580002 YDJCA8MPS7 323 aa30.23■■■□□ 2.43
SHMT1-207ENST00000580002 MECOMQ03112 1051 aa30.23■■■□□ 2.43
SHMT1-207ENST00000580002 CERS5Q8N5B7 392 aa30.23■■■□□ 2.43
SHMT1-207ENST00000580002 FAM205AQ6ZU69 1335 aa30.22■■■□□ 2.43
SHMT1-207ENST00000580002 PRELPP51888 382 aa30.22■■■□□ 2.43
SHMT1-207ENST00000580002 RASSF7Q02833 373 aa30.22■■■□□ 2.43
SHMT1-207ENST00000580002 GRIPAP1Q4V328 841 aa30.22■■■□□ 2.43
SHMT1-207ENST00000580002 SOGA3Q5TF21 947 aa30.22■■■□□ 2.43
SHMT1-207ENST00000580002 TTLL5Q6EMB2 1281 aa30.22■■■□□ 2.43
SHMT1-207ENST00000580002 ZSCAN25Q6NSZ9 544 aa30.22■■■□□ 2.43
SHMT1-207ENST00000580002 NSUN4Q96CB9 384 aaKnown RBP30.22■■■□□ 2.43
SHMT1-207ENST00000580002 UPF2Q9HAU5 1272 aaKnown RBP30.22■■■□□ 2.43
SHMT1-207ENST00000580002 SALL1Q9NSC2 1324 aa30.21■■■□□ 2.43
SHMT1-207ENST00000580002 CYP7A1P22680 504 aa30.21■■■□□ 2.43
SHMT1-207ENST00000580002 MFSD14BQ5SR56 506 aa30.21■■■□□ 2.43
SHMT1-207ENST00000580002 MYH7P12883 1935 aa30.21■■■□□ 2.43
SHMT1-207ENST00000580002 RAD50Q92878 1312 aa30.21■■■□□ 2.43
SHMT1-207ENST00000580002 PODNQ7Z5L7 613 aa30.2■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms