RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 GGA3Q9NZ52 723 aa24.17■■□□□ 1.46
SS18-209ENST00000578595 ZBTB7BO15156 539 aaPredicted RBP24.16■■□□□ 1.46
SS18-209ENST00000578595 ZNF280AP59817 542 aaPredicted RBP24.16■■□□□ 1.46
SS18-209ENST00000578595 G3BP1Q13283 466 aaKnown RBP eCLIP24.16■■□□□ 1.46
SS18-209ENST00000578595 MVPQ14764 893 aaKnown RBP24.16■■□□□ 1.46
SS18-209ENST00000578595 BCAMP50895 628 aa24.15■■□□□ 1.46
SS18-209ENST00000578595 FMR1Q06787 632 aaKnown RBP eCLIP24.15■■□□□ 1.46
SS18-209ENST00000578595 TDRD7Q8NHU6 1098 aaKnown RBP24.15■■□□□ 1.46
SS18-209ENST00000578595 DDX19BQ9UMR2 479 aa24.15■■□□□ 1.46
SS18-209ENST00000578595 TMEM88BA6NKF7 163 aa24.14■■□□□ 1.45
SS18-209ENST00000578595 FGFR2P21802 821 aa24.14■■□□□ 1.45
SS18-209ENST00000578595 MFSD14BQ5SR56 506 aa24.14■■□□□ 1.45
SS18-209ENST00000578595 CREBZFQ9NS37 354 aa24.14■■□□□ 1.45
SS18-209ENST00000578595 SASH1O94885 1247 aa24.13■■□□□ 1.45
SS18-209ENST00000578595 TFCP2Q12800 502 aa24.13■■□□□ 1.45
SS18-209ENST00000578595 SCARF1Q14162 830 aa24.13■■□□□ 1.45
SS18-209ENST00000578595 ANGEL2Q5VTE6 544 aaKnown RBP24.13■■□□□ 1.45
SS18-209ENST00000578595 CDC37L1Q7L3B6 337 aa24.13■■□□□ 1.45
SS18-209ENST00000578595 KRT26Q7Z3Y9 468 aa24.13■■□□□ 1.45
SS18-209ENST00000578595 FBXO33Q7Z6M2 555 aa24.13■■□□□ 1.45
SS18-209ENST00000578595 USP48Q86UV5 1035 aa24.13■■□□□ 1.45
SS18-209ENST00000578595 CERS5Q8N5B7 392 aa24.13■■□□□ 1.45
SS18-209ENST00000578595 ASTN2O75129 1339 aaPredicted RBP24.12■■□□□ 1.45
SS18-209ENST00000578595 RBM5P52756 815 aaKnown RBP eCLIP24.12■■□□□ 1.45
SS18-209ENST00000578595 ATP8B2P98198 1209 aa24.12■■□□□ 1.45
SS18-209ENST00000578595 SULF1Q8IWU6 871 aa24.12■■□□□ 1.45
SS18-209ENST00000578595 ABT1Q9ULW3 272 aaKnown RBP24.12■■□□□ 1.45
SS18-209ENST00000578595 FAM205AQ6ZU69 1335 aa24.11■■□□□ 1.45
SS18-209ENST00000578595 CEP350Q5VT06 3117 aa24.11■■□□□ 1.45
SS18-209ENST00000578595 PGAP2Q9UHJ9 254 aa24.11■■□□□ 1.45
SS18-209ENST00000578595 AKAP2Q9Y2D5 859 aa24.11■■□□□ 1.45
SS18-209ENST00000578595 ADM5C9JUS6 153 aa24.1■■□□□ 1.45
SS18-209ENST00000578595 SURF6O75683 361 aaKnown RBP24.1■■□□□ 1.45
SS18-209ENST00000578595 C20orf194Q5TEA3 1177 aa24.1■■□□□ 1.45
SS18-209ENST00000578595 PAXIP1Q6ZW49 1069 aaPredicted RBP24.1■■□□□ 1.45
SS18-209ENST00000578595 NEUROD6Q96NK8 337 aa24.1■■□□□ 1.45
SS18-209ENST00000578595 CHMP4BQ9H444 224 aaKnown RBP24.1■■□□□ 1.45
SS18-209ENST00000578595 GNL3LQ9NVN8 582 aaKnown RBP24.1■■□□□ 1.45
SS18-209ENST00000578595 MKRN1Q9UHC7 482 aaKnown RBP24.1■■□□□ 1.45
SS18-209ENST00000578595 A0A1B0GUL7 405 aa24.09■■□□□ 1.45
SS18-209ENST00000578595 CELF2O95319 508 aaKnown RBP24.09■■□□□ 1.45
SS18-209ENST00000578595 ADORA1P30542 326 aa24.09■■□□□ 1.45
SS18-209ENST00000578595 FKBP1AP62942 108 aaKnown RBP24.09■■□□□ 1.45
SS18-209ENST00000578595 DLGAP5Q15398 846 aa24.09■■□□□ 1.45
SS18-209ENST00000578595 NBPF9Q3BBW0 867 aa24.09■■□□□ 1.45
SS18-209ENST00000578595 CEP85Q6P2H3 762 aa24.09■■□□□ 1.45
SS18-209ENST00000578595 POLA2Q14181 598 aa24.08■■□□□ 1.45
SS18-209ENST00000578595 GORABQ5T7V8 394 aa24.08■■□□□ 1.45
SS18-209ENST00000578595 SSH3Q8TE77 659 aa24.08■■□□□ 1.45
SS18-209ENST00000578595 TBC1D22AQ8WUA7 517 aa24.08■■□□□ 1.45
SS18-209ENST00000578595 TTF2Q9UNY4 1162 aaKnown RBP24.08■■□□□ 1.45
SS18-209ENST00000578595 WNT10BO00744 389 aa24.07■■□□□ 1.44
SS18-209ENST00000578595 MMP14P50281 582 aa24.07■■□□□ 1.44
SS18-209ENST00000578595 TIMM10P62072 90 aa24.07■■□□□ 1.44
SS18-209ENST00000578595 PDE3AQ14432 1141 aa24.07■■□□□ 1.44
SS18-209ENST00000578595 DLK2Q6UY11 383 aa24.07■■□□□ 1.44
SS18-209ENST00000578595 KLRG1Q96E93 195 aa24.07■■□□□ 1.44
SS18-209ENST00000578595 SCAF8Q9UPN6 1271 aaKnown RBP24.07■■□□□ 1.44
SS18-209ENST00000578595 PHKA1P46020 1223 aa24.06■■□□□ 1.44
SS18-209ENST00000578595 CFAP100Q494V2 611 aa24.06■■□□□ 1.44
SS18-209ENST00000578595 MYO1BO43795 1136 aa24.05■■□□□ 1.44
SS18-209ENST00000578595 GRM1Q13255 1194 aa24.05■■□□□ 1.44
SS18-209ENST00000578595 CCDC102BQ68D86 513 aa24.04■■□□□ 1.44
SS18-209ENST00000578595 XAGE2Q96GT9 111 aa24.04■■□□□ 1.44
SS18-209ENST00000578595 COL1A1P02452 1464 aaPredicted RBP24.04■■□□□ 1.44
SS18-209ENST00000578595 PITPNM2Q9BZ72 1349 aa24.04■■□□□ 1.44
SS18-209ENST00000578595 DNAJC5GQ8N7S2 189 aa24.03■■□□□ 1.44
SS18-209ENST00000578595 WDR66Q8TBY9 1149 aa24.03■■□□□ 1.44
SS18-209ENST00000578595 BCL11AQ9H165 835 aa24.03■■□□□ 1.44
SS18-209ENST00000578595 PCDHAC2Q9Y5I4 1007 aa24.03■■□□□ 1.44
SS18-209ENST00000578595 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP24.03■■□□□ 1.44
SS18-209ENST00000578595 MYH2Q9UKX2 1941 aa24.03■■□□□ 1.44
SS18-209ENST00000578595 CLRN2A0PK11 232 aa24.02■■□□□ 1.44
SS18-209ENST00000578595 HMMRO75330 724 aa24.02■■□□□ 1.44
SS18-209ENST00000578595 RRP1P56182 461 aaKnown RBP24.02■■□□□ 1.44
SS18-209ENST00000578595 CST9Q5W186 159 aa24.02■■□□□ 1.44
SS18-209ENST00000578595 APOBEC3FQ8IUX4 373 aaKnown RBP24.02■■□□□ 1.44
SS18-209ENST00000578595 CDCA5Q96FF9 252 aa24.02■■□□□ 1.44
SS18-209ENST00000578595 VEZTQ9HBM0 779 aa24.02■■□□□ 1.44
SS18-209ENST00000578595 ZBTB40Q9NUA8 1239 aa24.02■■□□□ 1.44
SS18-209ENST00000578595 DENND2AQ9ULE3 1009 aa24.02■■□□□ 1.44
SS18-209ENST00000578595 EXOC6BQ9Y2D4 811 aa24.02■■□□□ 1.44
SS18-209ENST00000578595 APBB1O00213 710 aa24.01■■□□□ 1.43
SS18-209ENST00000578595 GRIK5Q16478 980 aa24.01■■□□□ 1.43
SS18-209ENST00000578595 AK9Q5TCS8 1911 aa24.01■■□□□ 1.43
SS18-209ENST00000578595 MAST3O60307 1309 aa24.01■■□□□ 1.43
SS18-209ENST00000578595 CNTNAP1P78357 1384 aa24.01■■□□□ 1.43
SS18-209ENST00000578595 SPDYE2BA6NHP3 402 aa24■■□□□ 1.43
SS18-209ENST00000578595 SPDYE6P0CI01 402 aa24■■□□□ 1.43
SS18-209ENST00000578595 DEFB115Q30KQ5 88 aa24■■□□□ 1.43
SS18-209ENST00000578595 RPAP2Q8IXW5 612 aaPredicted RBP24■■□□□ 1.43
SS18-209ENST00000578595 SEMA3EO15041 775 aa23.99■■□□□ 1.43
SS18-209ENST00000578595 CRKP46108 304 aa23.99■■□□□ 1.43
SS18-209ENST00000578595 TEKT1Q969V4 418 aa23.99■■□□□ 1.43
SS18-209ENST00000578595 SERPINA10Q9UK55 444 aa23.99■■□□□ 1.43
SS18-209ENST00000578595 RASGRF1Q13972 1273 aa23.98■■□□□ 1.43
SS18-209ENST00000578595 TNNI3KQ59H18 835 aa23.98■■□□□ 1.43
SS18-209ENST00000578595 PRAMEF18Q5VWM3 479 aa23.98■■□□□ 1.43
SS18-209ENST00000578595 ERC1Q8IUD2 1116 aa23.98■■□□□ 1.43
SS18-209ENST00000578595 C2orf69Q8N8R5 385 aa23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms